Gene Query: BTRC

Dataset Description Geneva Score
Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor 27.38
Human Adult Sorted Live Cell Erythroblasts transduced with Sigma shRNA Clone TRCN0000005418 targeting RIOK3 with puromycin selection RNAseq 24.79
SUV420H2 knockdown in PANC-1 21.52
mRNA-sequencing of 293T-no dice transfected with miR-16, miR-214, or KSHV-miR-K6-5p 19.65
RNA-seq transcriptional profiling in human primary fetal and adult CD34+ hematopoietic stem/progenitor cells (HSPCs) erythroid progenitor cells (ProEs) 14.56
Isolation and Transcriptome Analyses of Human Erythroid Progenitors: BFU-E and CFU-E 14.54
Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution 13.41
Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution [III] 13.41
CASZ1 directly regulates expression of myogenic genes through regional epigenetic modifications to induce muscle and rhabdomyosarcoma cell differentiation 13.21
RNA-Seq of cKIT+ sorted cells from 16-16.5 week old fetal testes and ovaries and RNA-Seq of TRA-1-60+ H1 hESCs 13.07
Altering cancer transcriptomes using epigenomic inhibitors 12.77
Altering cancer transcriptomes using epigenomic inhibitors [RNA-Seq] 12.77
A novel lncRNA lncRNA-AF339830 promotes colorectal carcinogenesis and glucose metabolism by stabilizing and specifying the transcription modification pattern of c-Myc [RNA-Seq] 11.85
A novel lncRNA lncRNA-AF339830 promotes colorectal carcinogenesis and glucose metabolism by stabilizing and specifying the transcription modification pattern of c-Myc 11.85
RNA-seq transcriptonal profiling in human primary adult erythroid progenitor cells (ProEs) after shRNA-mediated depletion of TFAM and PHB2 expression 11.76
Gene-Centric Functional Dissection of Human Genetic Variation Uncovers Regulators of Hematopoiesis 11.57
The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation 11.5
Major roles of cyclobutane pyrimidine dimers, nucleotide excision repair and ATR in the alternative splicing response to UV irradiation 11.31
mRNA and miRNA expression in primary human muscle cells treated with 1,25(OH)2D3 or vehicle 11.07
RNA expression in primary huamn muscle cells treated with 1,25(OH)2D3 or vehicle 11.07
RNAseq Study in CC-671 Treated Cal-51 Cells 10.73
A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks 10.58
Transcriptome analysis in Neobractatin treated cells 10.27
RNA-seq analysis reveals profound changes in transcript profiles between siCon- and siH19-transfected EVT cells 10.17
Therapeutic targeting of KDM1A/LSD1 in Ewing sarcoma engages the ER-stress response II 9.91
Genomic expression analysis of K562 cells expressing shRNA targeting lncRNA-IIRX and control cells 9.69
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice [HCT116_RNA-seq] 9.6
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice 9.6
Single-cell transcriptomics of human oocytes: environment-driven metabolic competition and compensatory mechanisms during oocyte maturation 9.53
A potent and selective small-molecule degrader of STAT3 achieves complete tumor regression in vivo 9.35
Epigenetic Therapy Increases Therapeutic Efficacy in Myeloproliferative Neoplasms Through Inhibition of Aberrant Inflammatory Signaling 9.26
MondoA Links Muscle Lipid Accumulation and Insulin Resistance Driven by Nutrient Overload 9.08
Transcriptome profiling in primary human skeletal myotubes with MondoA knockdown 9.08
Consequences of Ribosomal Protein Haploinsufficiency in Human Hematopoiesis 8.86
Differential analysis of HOXA1 in adult cells at isoform resolution by RNA-Seq [Illumina] 8.5
Differential analysis of gene regulation at transcript resolution by RNA-Seq 8.5
Quantitative comparison between cellular mRNAs and exosomal mRNAs in human iPSC-derived motor neurons 8.44
Premature polyadenylation-mediated loss of stathmin-2 is a hallmark of TDP-43-dependent neurodegeneration 8.37
microRNAs with an AAGUGC seed motif constitute an integral part of a signaling network driving NSCLC cell proliferation 8.28
CTCF and CohesinSA-1 Mark Active Promoters and Boundaries of Repressive Chromatin Domains in Primary Human Erythroid Cells 8.0
CTCF and CohesinSA-1 Mark Active Promoters and Boundaries of Repressive Chromatin Domains in Primary Human Erythroid Cells [RNA-Seq] 8.0
Post-transcriptional manipulation of TERC reverses molecular hallmarks of telomere disease 7.67
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis [d7+d14] 7.54
A peninsular structure coordinates asynchronous differentiation with morphogenesis to generate pancreatic islets [bulk vs buds] 7.45
Transcriptional response to the HSP70 inhibitor MAL3-101 in parental rhabdomyosarcoma cells and isogenic acquired-resistance lines. 7.43
DNA breaks and chromatin structural changes enhance the transcription of Autoimmune Regulator target genes 7.24
DNA breaks and chromatin structural changes enhance the transcription of Autoimmune Regulator target genes [RNA-Seq] 7.24
LINE-2 transposable elements are a source of functional human microRNAs and target sites 7.21
RNA-sequencing time course of Human Intestinal Epithelial Cells (HIECs) following knockdown of miR-30bcd using complementary locked nucleic acids 7.09
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq] 7.01
RNA-seq of shEZH2 cells 6.97
Gene expression analysis of BRD4 knockdown in HT-29 and HCT116 cells 6.81
TMED9-gated CNIH4 and TGFa signaling promotes pro-metastatic states in human primary colon cancer cells 6.77
C9orf72 Intermediate Repeats are Associated with Corticobasal Degeneration, Increased C9orf72 Expression and Disruption of Autophagy 6.51
Downregulation of DDX5/DDX17 and REST 6.3
RING-finger protein 6 amplification activates JAK/STAT3 pathway by modifying SHP-1 ubiquitylation and associates with poor outcome in colorectal cancer 6.26
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors 6.24
Effect in HCT116 cells of 3hr cortistatin A treatment on gene expression. 6.22
Mediator kinase inhibition further activates super-enhancer-associated genes in AML 6.22
Targets of CDK12 on ZR-75-30 breast cancer cells (RNA-seq) 6.17
Transcriptomic characterization of a human in vitro model of arrhythmogenic cardiomyopathy under topological and mechanical stimuli 6.14
Neuroligin-4 Regulates Excitatory Synaptic Transmission in Human Neurons 6.07
Transcriptome analysis of immature and matured human oocytes from patients of young and advanced maternal age 5.95
Inducible three-factor direct reprogramming to nephron progenitors using piggyBac transposons 5.89
Examining serotonergic neuron differentiation from human iPSCs 5.82
Canonical poly(A) polymerase activity promotes the decay of a wide variety of mammalian nuclear RNAs 5.82
ZMYND8 reads the dual histone mark H3K4me1-H3K14ac to antagonize the expression of metastasis-linked genes 5.81
Mitotically associated long non-coding RNA, MANCR regulates cell cycle in triple negative breast cancer cells  5.73
The ribosomal prolyl-hydroxylase OGFOD1 decreases during cardiac differentiation, modulates translation and spliceosomal processes 5.73
Inhibition of SF3B1 by molecules targeting the spliceosome in Rh18 cells 5.68
miR-450a acts as a tumor suppressor in ovarian cancer by readjusting energy metabolism 5.66
Analyzing the interactions of mRNAs, miRNAs, lncRNAs and circRNAs to predict competing endogenous RNA networks in glioblastoma 5.48
BAF controls genome accessibility 5.48
Aneuploidy triggers an immune response 5.18
MKL1 augments megakaryocyte maturation by enhancing the SRF regulatory axis [RNA-seq] 5.17
MKL1 augments megakaryocyte maturation by enhancing the SRF regulatory axis 5.17
Transcription factors OVOL1 and OVOL2 induce the mesenchymal to epithelial transition in human cancer 5.11
T47D RNA-seq and ChrRNA-seq data 5.11
Arginine citrullination at the C-terminal domain controls RNA Polymerase II transcription 5.11
Activation of a SOX2-dependent transcriptional regulatory circuit drives glioblastoma. 5.11
EHMT1 and EHMT2 inhibition induce fetal hemoglobin expression 5.08
EHMT1 and EHMT2 inhibition induce fetal hemoglobin expression [RNA-seq] 5.08
Transcriptional effect of ETV1 knockdown in melanoma cells 5.02
Short and Long RNA sequencing of human mature erythrocytes 4.99
Global Mapping of Human RNA-RNA Interactions 4.98
Transcriptome analysis of U87 cells upon LINC00152 knockdown 4.97
Characterisation of HIF-dependent alternative isoforms in pancreatic cancer 4.93
Generation of Brain Region-specific Organoids using a Miniaturized Spinning Bioreactor and Modelling ZIKV Exposure 4.91
FMRP facilitates the nuclear export of N6-methyladenosine-containing mRNAs 4.85
TWIST1-induced microRNA-424 drives an intermediate epithelial-to-mesenchymal transition that opposes metastasis 4.84
RNA-Seq profiling of iPSC-derived ventricular and atrial cardiomyocytes 4.83
RNA sequencing for PDX1, NGN3 and MAFA transduced iPSCs cell 4.78
Gene expression analysis of human haploid cells (HAP1) depleted of SMARCB1 and SMARCA4 4.68
a-synuclein accumulation in an iPSC derived model of early onset sporadic Parkinson’s Disease reveals novel drug targets 4.63
Human TFIIH kinase CDK7 regulates transcription-associated epigenetic modification 4.63
Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders 4.62
CD95L derived si- and shRNAs kill cancer cells through an RNAi mechanism by targeting survival genes [shL3.shR6.RNAseq.lg] 4.6
Dynamic epigenetic remodeling underlies microRNA-mediated transdifferentiation of human adult fibroblasts into neuronal subtypes 4.58
hnRNP C is a key regulator of protein synthesis in mitosis 4.51
Group A Streptococcus M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP 4.46
Smad5 acts as an intracellular pH messenger and maintains bioenergetic homoeostasis 4.41
Differential susceptibility of human pleural and peritoneal mesothelial cells to asbestos exposure 4.4
Histone Demethylase-Assisted Somatic Cell Nuclear Transfer Facilitates Derivation of Human Pluripotent Stem Cells 4.37
Transciptome profiling of NoDice and RNaseIII null cells prior to and after polyIC treatment 4.3
Single-cell Transcriptomic Atlas of the Human Retina Identifies Cell Types Associated with Age-Related Macular Degeneration 4.23
Gene-Edited Human Kidney Organoids Reveal Mechanisms of Disease in Podocyte Development 4.21
Gene expression profiling by RNA-seq in hTert-HME1 cell line treated with control or BRCA2 siRNAs and grown with or without EGF (epithelial growth factor) II 4.17
Early transcriptome profiling of microRNA-mediated neuronal reprogramming [RNA-seq timecourse] 4.16
RNA-seq analysis reveals profound changes in transcript profiles between siCon- and siH19-transfected uterine smooth muscle cells (USMC) 4.14
Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq 4.12
Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 4.12
ICE1 promotes the link between splicing and nonsense-mediated mRNA decay 4.11
Human Nonsense-Mediated RNA Decay Initiates Widely by Endonucleolysis and Targets snoRNA Host Genes 4.07
Parvovirus B19 NS1 protein induces cell cycle arrest at G2 phase 3.97
Molecular mechanism underlying increased ischemic damage in the ALDH2*2 genetic polymorphism using a human iPSC model system 3.95
RNA-seq on Enasidenib or DMSO Treated CD71+ Cells from Umbilical Cord Blood (UCB) 3.89
Heterogeneous nuclear ribonucleoprotein C1/C2 links transcriptional and splicing actions of 1,25-dihydroxyvitamin D 3.89
Recapitulation of Human Neural Microenvironment Signatures in iPSC-Derived NPC 3D Differentiation 3.88
Universal alternative splicing of noncoding exons 3.87
SNHG12 knockdown in Human Umbilical Vein Cells under ROS conditions. 3.84
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons [RNA-Seq] 3.84
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons 3.84
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes 3.83
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [RNA-Seq] 3.83
Human iPSC-based Modeling of Late-Onset Disease using Progerin-induced Aging 3.81
circ-ZNF609 regulates G1-S progression in Rhabdomyosarcoma 3.8
Investigsting the role of NF-ĸB p50 S80 phosphorylation in regulating TNFα-induced transcription in HEK293T cells 3.77
RNA sequencing of ESC/iPSC-derived purified PAX6-GFP neural progenitors form control and Phelan-Mcdermid patients 3.72
R430: A potent inbibitor of DNA and RNA viruses 3.71
Inhibition of TNBC metastasis by Gpx1 3.71
Genomic and proteomic resolution of heterochromatin and its restriction of alternate fate genes 3.7
Genomic and proteomic resolution of heterochromatin and its restriction of alternate fate genes (RNA-seq) 3.7
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data 3.7
RNA sequencing of erythroid and granulomonocytic colonies differentiated from transduced bone marrow CD34+ cells expressing U2AF1 S34F mutation, U2AF1 wild-type or empty vector control 3.68
Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal 3.68
Paired Related Homeobox Protein 1 Regulates Quiescence in Human Oligodendrocyte Progenitors 3.67
Postmortem Cortex Samples Identify Distinct Molecular Subtypes of ALS: Retrotransposon Activation, Oxidative Stress, and Activated Glia [shRNA] 3.67
RNA Sequencing of Human iPS derived Cardiomyocytes 3.67
The E3 ubiquitin ligase HectD1 suppresses EMT and metastasis by targeting the +TIP protein ACF7 for degradation 3.65
A Unique Epigenomic Landscape Defines Human Erythropoiesis (RNA-seq) 3.64
A Unique Epigenomic Landscape Defines Human Erythropoiesis 3.64
RNA-seq Transcriptome Analysis of AD169 and AD169-ΔUL26 infected MRC5 fibroblasts. 3.64
Deciphering H3K4me3 Broad Domains Associated With Gene Regulatory Networks and Conserved Epigenomic Landscapes in the Human Brain [RNA-Seq] 3.63
Deciphering H3K4me3 Broad Domains Associated With Gene Regulatory Networks and Conserved Epigenomic Landscapes in the Human Brain 3.63
Depicting early human development and germ cell origin with porcine embryos 3.59
Transcriptome-wide discovery of microRNA binding sites in human brain by Ago2 HITS-CLIP [Ago2-miRNA-target mRNA complexes] 3.58
3’ Uridylation Expands miRNA Target Repertoire 3.57
Multiple roles for Grainyheadlike transcription factors in the establishment and maintenance of human mucociliary airway epithelium 3.57
PTBP1 excludes UPF1 to protect long 3'UTRs from nonsense-mediated mRNA decay 3.56
RNA-seq of tumor cells following angiopellosis extravasation 3.55
Lysine benzoylation is a novel histone mark [RNA-seq] 3.53
Lysine benzoylation is a novel histone mark 3.53
DUX4-induced dsRNA and MYC mRNA Stabilization Activate Apoptotic Pathways in Human Cell Models of Facioscapulohumeral Dystrophy 3.51
Integrated multi-omics approach reveals a role of ALDH1A1 in lipid metabolism in human colon cancer cells 3.5
Genetic disarray follows mutant KLF1-E325K expression in a congenital dyserythropoietic anemia patient 3.45
Effect of OVO-like 1 knockdown on global transcript expression in differentiated BeWo trophoblast cells 3.45
Modeling and characterization of the dynamic gene regulatory networks underlying cancer drug resistance based on time-course RNA-seq data 3.44
The effect of engineered del(7q) on induced pluripotent stem cells (iPSCs) derived from patients with Shwachman Diamond Syndrome (SDS). 3.44
NKX2.2 3.43
RNA-Seq analysis of NKX2.2 knockdown in human pancreatic islets 3.43
Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes (ALK) 3.43
A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons [RNA-seq] 3.42
A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons 3.42
Identification of renal resident macrophages across species [C1] 3.4
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq Human] 3.38
Gene expression data from IMR90 control, IMR90 shRRM2 and shRRM2/shp16 3.38
mTORC1 balances cellular amino acid supply with demand for protein synthesis through post-transcriptional control of ATF4 3.37
CNOT1 and Transcriptomic Landscape of a HeLa Cell Line 3.35
RNA-seq reveals changes in the astrocyte transcriptome following Borrelia burgdorferi infection 3.32
microRNA-seq and RNA-seq reveals changes in the astrocyte transcriptome following Borrelia burgdorferi infection 3.32
RNAseq Analysis in glioblastoma cells treated with Mepazine 3.31
Opposing Effects of Cyclooxygenase-2 (COX-2) on Estrogen Receptor β (ERβ) Response to 5α-reductase Inhibition in Prostate Epithelial Cells 3.29
Identification of differentially expressed genes between senescence and senescence bypass cells 3.29
RNA-Guided Human Gene Activation by Cas9/CRISPR-Based Engineered Transcription Factors 3.26
Global analysis of alternative splicing regulated by RBM10 3.26
Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability [ RNA-seq] 3.24
Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability 3.24
De novo reconstruction of human adipose reveals conserved lncRNAs as regulators of brown adipogenesis 3.24
Codon usage optimization in pluripotent embryonic stem cells [RNA-seq] 3.21
Metabolic Reprogramming Associated with Aggressiveness Occurs in the G-CIMP-High Molecular Subtypes of IDH1mut Lower Grade Gliomas 3.21
RNA sequencing of BT142 and TS603 cell lines 3.21
SLIGRL-induced gene expression changes in NHEK cells 3.2
FBP2 inhibits sarcoma progression by restraining mitochondrial biogenesis 3.18
Ribosome queuing enables non-AUG translation to be resistant to multiple protein synthesis inhibitors 3.18
Nucleoporin-mediated regulation of cell identity genes 3.16
hiPSCs unravel aberrant TGFβ signaling as an etiology of left ventricular non-compaction 3.15
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations [RNA-Seq] 3.14
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations 3.14
The Glioma-Infiltrating T Cell Receptor Repertoire 3.13
Whole Transcriptomic Sequencing of Metastatic Castration Resistant Prostate Cancer Samples 3.12
Bromodomain protein BRD4 is a transcriptional repressor of autophagy and lysosomal function 3.11
Montelukast counteracts the influenza virus-induced block in unfolded protein stress response and reduces virus multiplication 3.08
circRNA-sequencing 3.06
BRD9 defines a novel SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors 3.05
Parkinson’s Disease Genetic Risk in a Midbrain Neuronal Cell Line 3.02
Atheroprotective flow alters EZH2/H3K27me3 dependent transcriptional profile in human endothelial cells 3.01
DNA Methylation Reprograms Metabolic Gene Expression in End-Stage Human Heart Failure 3.0
RNA sequencing of HepG2 cells treated with estradiol or estrogen receptor agonist 2.99
The LINC01138 Drives Malignancies via Activating Arginine Methyltransferase 5 in Hepatocellular Carcinoma 2.97
Molecular Biomarkers Screened by Next-generation RNA Sequencing for non-sentinel lymph node status predicting in breast cancer patients with metastatic sentinel lymph node 2.97
Proteolytic cleavage by taspase1 and the regulation of the stability of MLL1 2.97
METTL3 and WTAP 2.97
Promoter of lncRNA gene *PVT1* is a tumor suppressor DNA element 2.95
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and PVT1 Knockdown by CRISPRi in MDA-MB-231 human breast cancer cell line 2.95
Transcriptome Analysis of CircMRPS35 mediated mRNA expression profiles 2.94
Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions 2.94
The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin Remodeling Complexes 2.93
A transcriptome-wide divergence in protein translation scales with LIN28B expression 2.93
RNAseq in Alzheimer's Disease patients 2.93
Transcriptional study of ARN8 cells treated with novel DHODH inhibitors 2.87
STVI-120 Induction of differentiation in human epidermal stem cells followed by differential splicing analysis 2.87
Mutation independent activation of the Notch pathway is associated with Lapatinib resistance in Her2+ breast cancer cell lines 2.87
RNA-Seq study of Cell lines rendered resistant to idelalisib and ibrutinib 2.86
List of TIAM1 differentially expressed genes in SW620 cells [RNA-seq] 2.85
The inhibitory effect of TIAM1 on TAZ transcriptional activity and TIAM1 differentially expressed genes 2.85
Analysis of transcrptomes of Danon patient derived hiPSC-cardiomyocytes by RNA-deep Sequencing 2.84
Transcriptomic Profiling of Developing Human Paraxial Mesoderm from 4.5-5 Weeks of Gestation Human Embryos 2.84
RC3H1 posttranscriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-kB pathway 2.83
RC3H1 posttranscriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-kB pathway [RNA-Seq] 2.83
Human Adult Sorted Live Cell Erythroblasts transduced with Sigma non-targeting shRNA negative control (SHC002V) with puromycin selection RNAseq 2.82
Transcriptomic analysis of senescent cells upon EXOC7 knockdown. 2.81
X-Ray induced DNA-Hydroxymethylation changes 2.81
A SRp55-regulated alternative splicing network controls pancreatic beta cell survival and function 2.8
MYCL and EP400 are required for Max and MCPyV mediated gene activation 2.8
Genome wide mapping of long noncoding (lnc) RNAs in hepatic stellate cells 2.79
Control of human hemoglobin switching by LIN28B-mediated regulation of BCL11A translation 2.76
Transcriptome of iPSC-derived Neural Cells with Heterozygous Knockout in CHD8 2.74
ATF4 inhibition by p62 represses stromal metabolic reprogramming and tumorigenesis II 2.7
Gene expression profiles in NORAD knockout and PUMILIO overexpressing cells 2.69
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation [RNA-Seq rescue_SS] 2.63
Single-cell expression profiling reveals new roles for G-protein-coupled receptors in the regulation of Th17 pathogenicity 2.61
Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing (Total RNA sequencing) 2.6
The MEF2B Regulatory Network 2.6
The MEF2B Regulatory Network - RNA-seq data 2.6
Combined use of astragalus polysaccharide and berberine attenuates insulin resistance in IR-HepG2 cells via regulation of the gluconeogenesis signaling pathway 2.57
Transcriptome profiling of HepG2 cells upon treatment of the menin-MLL inhibitor MI-503 or DMSO 2.57
An epigenetic mark of polycomb response elements implemented by Trx/MLL/COMPASS 2.57
Physiologic expression of Sf3b1K700E causes impaired erythropoieses, aberrant splicing, and sensitivity to pharmacologic spliceosome modulation 2.56
Transcriptome-wide discovery of microRNA binding sites in human brain by Ago2 HITS-CLIP 2.54
Effects on gene expression of doxorubicin in human stem cells-derived cardiomyocytes 2.53
Synectin Promotes Fibrogenesis by Regulating PDGFR Isoforms Through Distinct Mechanisms 2.51
The mSWI/SNF ATPase module mediates subcomplex identity and non-catalytic targeting in SCCOHT [RNA-seq] 2.51
The ATPase module of mammalian SWI/SNF family complexes mediates subcomplex identity and catalytic activity-independent genomic targeting 2.51
Aberrant downstream mechanisms following loss of KMT2C and KMT2D in Pancreatic Ductal Adenocarcinoma 2.51
Reconstruction of the Human Blood-Brain Barrier in vitro reveals a Pathogenic Mechanism of APOE4 in Pericytes 2.5
PolyA-sequencing in IMR-32 cells treated with THZ531 or DMSO 2.47
Sequencing-based analyses characterize a tumor suppressive role of mir-1271 repressed by DNA hypermethylation in gastric cancer 2.46
RNA-Sequencing shows novel transcriptomic signatures in failing and non-failing human heart 2.45
Searching for target genes of miR-508/509/506/514 in HCT116 cells 2.43
The effect of insulin on mRNA transcription of human pluripotent stem cells 2.42
Identification of mRNAs with reduced ribosomal loading upon knock-down of translation factor DAP5 from hESCs. 2.4
Cap-specific terminal N6-methylation of RNA by an RNA polymerase II-associated methyltransferase. 2.4
mRNA recovered upon RNF219 IP. [RNA-IP] 2.39
Derivation of ventrical and atrial cardiomyocytes and maturation using biowires 2.37
A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [RNA-seq] 2.36
Self-organized cerebral organoids with human specific features predict effective drugs to combat Zika virus infection [RNA-seq] 2.36
Self-organized cerebral organoids with human specific features predict effective drugs to combat Zika virus infection 2.36
Analysis of human, chimpanzee, macaque and mouse tissue transcriptomes using Next Generation Sequencing 2.35
Hypoxic transcriptome of SQ20B human head and neck cancer cells 2.34
Single-Cell reconstruction of differentiation trajectory reveals essential dynamics in human cardiac lineage commitment 2.33
Regulation of Lipids is Central to Replicative Senescence 2.32
Transcriptomic analysis of human neural progenitor cells differentiation into astrocytes 2.31
Transcriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and chemoresistance 2.28
Alternative splicing regulated by QKI and RBFOX1 promotes the mesenchymal cell state in breast cancer 2.27
RNA-sequencing in immortalized human mammary epithelial cells 2.27
Acetylation of spliceosome protein PHF5A modulates stress responses and colorectal carcinogenesis through alternative splicing mediated upregulation of KDM3A 2.26
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis 2.26
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival [RNA-Seq] 2.26
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival 2.26
Human stem cell based models of neuronal migration provide insight into neurological disease pathogenesis and potential treatment 2.22
ChIPseq and RNAseq analysis of T47D cells with/without silencing TRPS1/CHD4 2.22
Loss of CREBBP results in gene expression repression in lymphoma cells 2.21
Loss of CREBBP results in H3K27Ac loss at enhancers and gene expression repression in lymphoma cells 2.21
BI Human Reference Epigenome Mapping Project 2.19
HDAC and NFκB antagonists synergistically inhibit growth and metastatic dissemination of MYC-driven medulloblastoma 2.18
ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin 2.18
eVIP2: Expression-based variant impact phenotyping to predict the function of gene variants 2.17
The human cellular nucleic acid binding protien binds G-rich elements close to translation initiation sires and promotes translation. 2.17
The human cellular nucleic acid binding protien binds G-rich elements close to translation initiation sires and promotes translation. [RNA-Seq] 2.17
Involvement of Condensin in Cellular Senescence through Gene Regulation and Compartmental Reorganization 2.17
Identification of Tissue-Specific Protein-Coding and Noncoding Transcripts across 14 Human Tissues Using RNA-seq 2.15
SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate 2.14
N6-methyladenosine Recruits HNRNPG for Alternative Splicing Regulation 2.12
transcriptomic profiling of HEK293 cells upon individual knockdown of the splicing factors RBM17, U2SURP or CHERP 2.1
Host transcriptome analysis of Aspergillus fumigatus infection in Airway Epithelial Cells 2.1
Gene expression in mature and immature human ES-derived beta cells, and sorted beta-cells from adult islets 2.1
CDK12 regulates alternative last exon mRNA splicing and promotes invasion of a breast cancer cell line 2.09
Transcriptional control of subtype switching ensures adaptation and growth of pancreatic cancer 2.08
An Argonaute phosphorylation cycle promotes microRNA-mediated silencing [whole transcriptome RNA-seq] 2.07
A CLK3-HMGA2 alternative splicing axis impacts human hematopoietic stem cell molecular identity throughout development (HPC-5F RNAseq) 2.06
Impact of ETV7 activity on interferon-stimulated gene expression in 293T cells treated with interferon alpha 2.05
ETV7 and interferon response 2.05
mRNA-seq from Nutlin-3a, doxorubicin, and DMSO treated HCT116 p21-/- cells 2.04
RNA-Seq of cKIT+ sorted cells from 53-137 day old fetal testes and ovaries and RNA-Seq of TRA-1-81+ H1 and UCLA1 hESCs. 2.02
cKIT+ sorted cells from 57-137 day old fetal testes and ovaries 2.02
MALT1 Inhibition Is Efficacious in Both Naïve and Ibrutinib-Resistant Chronic Lymphocytic Leukemia. 2.02
CRISPR activation of long non-coding RNAs transiently expressed during cortical neuron differentiation associated with Field, et al, Stem Cell Reports 2018 2.0
RNA-Seq analysis of 4N and 2N RPE1 cells following polyploid induction via cytokinesis failure by siRNA knockdown of Anillin [tpo8] 1.99
RNA-seq analysis upon ARID1B overexpression 1.99
UBC9 knockdown in bladder cancer T24 cell lines 1.97
Age-Related Gene Expression Changes in Prostate Cancer Patients [RNA-Seq] 1.95
Age-Related Gene Expression Changes in Prostate Cancer Patients 1.95
Tracing transcriptome profiles of human oocyte cultured by growth hormone or not in vitro by single cell RNA-seq 1.94
RNA-Seq characterization of human H1-derived NPC differentiation timecourse 1.93
Transcriptomic analysis of ERR alpha orphan nuclear receptor 1.92
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo 1.92
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo [RNA-Seq] 1.92
Studying iPSCs from a hibernating mammal reveals molecular mechanisms of cold resistance in neural tissues 1.9
UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons 1.9
Effect of digoxin treatment on the gene and alternative splice expression in human pluripotent stem cells- derived mesenchymal stem cells 1.88
The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC derived cardiomyocytes. 1.86
SMUG1 promotes telomere maintenance through telomerase RNA end-processing 1.77
CRISPR adenine and cytosine base editors with reduced RNA off-target activities [CBE] 1.76
CRISPR adenine and cytosine base editors with reduced RNA off-target activities 1.76
Subclonal cooperation drives metastasis through modulating local and systemic immune microenvironments 1.76
Repurposing of promoters and enhancers during mammalian evolution 1.75
RNA-seq reveals abundant circRNA, lncRNA and mRNA in blood exosomes of patients with colorectal carcinoma 1.72
Next generation sequencing of small RNAs isolated from exosomes in human semen 1.71
RNA-sequencing of fibrolamellar carcinoma (FLC) cell line treated with miR-375 mimic 1.71
Discovery of Drug Candidates that Inhibit and Eliminate Zika Virus Infection in Fetal and Adult Brain 1.71
Effect of drugs on transcriptomic profiles 1.71
RNA Missplicing in Fuchs Endothelial Corneal Dystrophy 1.7
ELF1 expression in prostate cells reduces oncogenic ETS functions and promotes senescence and sensitivity to chemotherapy through distinct gene expression programs [RNA-seq] 1.7
ELF1 expression in prostate cells reduces oncogenic ETS functions and promotes senescence and sensitivity to chemotherapy through distinct gene expression programs 1.7
HeLa transcriptome induction by IFN gamma and indoleamine 2,3-dioxygenase (IDO) 1.68
Genomic profiling of human spermatogonial stem cells [BulkRNA-Seq] 1.68
Global gene expression profiles of cardiomyocytes differentiated from human pluripotent stem cells (hiPSC-CMs) in 3D culture exposed to ethanol 1.66
Selective Inhibition of the Second Bromodomain of BET Family Maintains Anti-Tumor Efficacy and Improves Tolerability (LNCaP RNA-seq) 1.63
Transcriptomic analysis of inter- and intra-patient variation in human iPSC cardiomyocytes: Platform for precision medicine to predict drug toxicity 1.62
Sorted MDMs with RFP+GFP+ or RFP+GFP- Mtb 1.61
Transcriptome data of temporal and cingulate cortex in the Rett syndrome brain 1.61
RNA-seq analysis in knockdown Jurkat samples for each factor of TAL1 complex 1.6
Oncogenic roles of ARID5B in T-ALL 1.6
Loss of 9p21 regulatory hub promotes kidney cancer progression by upregulating HOXB13 1.59
Differential mRNA expression upon 9p21 deletion in HEK TE single-cell derived clones 1.59
Gene expression changes after depletion of Cyclin F and atypical E2Fs in HeLa cells. 1.59
Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes 1.57
Molecular characterization of BRSK2 and BRSK1 kinases as negative regulators of the NRF2 transcription factor 1.57
Evolving Spindlin1 Small Molecule Inhibitors Using Protein Microarrays 1.55
FGF2 regulation of gene expression in stable inducible Neurons 1.54
Silencing SPIB in attached and floating state of H1703 lung cancer cells 1.53
Human cell line and subcutaneous tumor 1.51
Transcriptional analysis of ZIKV-infected Ifnar-/- and Ifnar+/- placentas and IFN-beta (IFN-b) or IFN-lambda (IFN-l) treated human mid-gestation chorionic villus explants 1.5
Analysis of transcriptional differences after IFN-beta (IFN-b) or IFN-lambda (IFN-l) treated human mid-gestation chorionic villus explants 1.5
Gene expression analysis upon mtDNA depletion 1.49
Gene expression analysis upon mtDNA depletion [RNA-seq] 1.49
RNA-seq of HEK293T cells overexpressing TET1-FL or TET1-ALT 1.48
Cell cycle dynamics of human pluripotent stem cells primed for differentiation 1.47
An improved method for circular RNA purification that efficiently removes linear RNAs containing G-quadruplexes or structured 3’ ends 1.47
Novel Non-catalytic Substrate-selective p38α-specific MAPK Inhibitors with Endothelial-Stabilizing and Anti-inflammatory Activity 1.47
Total RNA sequencing of prospective axial stem cell cultures derived from human pluripotant stem cells 1.42
Non-coding and coding transcriptional profiles are significantly altered in pediatric Retinoblastoma tumors 1.4
Mitotic stress is an integral part of the oncogene-induced senescence program that promotes multinucleation and cell cycle arrest 1.38
HMGA2 Promotes Long-Term Engraftment and Myelo-Erythroid Differentiation of Human Hematopoietic Stem and Progenitor Cells 1.38
RNA-seq analysis of Retinoic Acid and Non-treated Control hiPSCs 1.38
Investigation into human Tra2 protein-dependent splicing in MDA-MB-231 cells using iCLIP and RNA-seq 1.37
Gene expression analysis of human liver progenitor-like cells in culture 1.36
Integrin αvβ3 acting as membrane receptor for thyroid hormones mediates angiogenesis in malignant T cells 1.36
CD73 knockdown effect in pancreatic cancer cell lines 1.31
Effect of Hypoxia in Severe Preeclampsia through Epigenetic Regulation 1.31
Comparison of single-cell transcriptomics quality between unfixed cells and cells that were fixed and mock stained according to the RAID procedure 1.31
CRISPR-Cas9 based screen for p53-bound enhancers that function in oncogene-induced senescence 1.29
PRRX2 and HEY2 double knock-down facilitates ASCL1-induced neuron conversion in human dermal fibroblasts. 1.29
Image based identification and targeting of cancer stem cells in pancreatic adenocarcinoma (PDAC) 1.27
Suppression of NAF-1 in Breast Cancer Cells Reduces their Tumorigenicity by Interfering with Cellular Iron Distribution and Metabolism and Ensuing ROS Formation and Apoptosis 1.22
Luminal subtype-specific circRNAs in breast cancer cells by a novel tool for external data analysis. 1.22
Control of human hemoglobin switching by LIN28B-mediated regulation of BCL11A translation (Ribo-seq, RNA-seq) 1.19
Specific molecular signatures underlie response to decitabine in CMML 1.17
Specific molecular signatures underlie response to decitabine in CMML [RNA-seq] 1.17
Identification of expressed and conserved human non-coding RNAs 1.16
Tunable protein synthesis by transcript isoforms in human cells (Transcript Isoforms in Polysomes sequencing: TrIP-seq) 1.16
Transcriptome profiling of microRNA-mediated neuronal reprogramming with REST repression at day 7 1.15
Identification of transcripts altered upon LIN-41 knockdown in human embryonic stem cells 1.14
Isolation and sequencing of AGO-bound RNAs reveals characteristics of stem-loop processing in vivo 1.13
Networks of cultured iPSC-derived neurons reveal the human synaptic activity-regulated adaptive gene program 1.11
Functional significance of the HIV-1 Tat signature amino acid residues 1.11
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits 1.1
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits [mRNA-Seq] 1.1
mRNA sequencing analysis of cultured human primary airway epithelial cells upon exposure to PMN exosomes 1.1
Role of FGFR1 in neuronal devlopment 1.08
Identification of a LIF-responsive replication-competent human β cell 1.05
Identification of novel recurrent ETV6-IGH fusions in primary central nervous system lymphoma using high throughput RNA sequencing 1.05
Stranded RNA-seq were performed on total RNA following ribosomal RNAs depletion (Ribo-zero removal kit, illumina) for 3 brain , 8 IDHwt and 5 IDHmut glioma samples. 1.03
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies [RNA-seq data set 2] 1.03
Epigenome Editing by a CRISPR/Cas9-Based Acetyltransferase Activates Genes from Promoters and Enhancers 1.01
Next Generation Sequencing Facilitates Quantitative Analysis of Human Pluripotent Stem Cell-Derived Endocardial-like And Primary Cardiac Endothelial Cell Transcriptomes 1.0
Epigenetic Reprogramming of mutant RAS-driven Rhabdomyosarcoma via MEK Inhibition 0.97
MEK inhibition rewires enhancer landscapes in RAS-driven Rhabdomyosarcoma to unlock a myogenic differentation block 0.97
Identification of renal resident macrophages across species 0.96
Pseudouridylation of tRNA-derived fragments steers translation control in stem cells [Polysome-Seq] 0.96
Screening in Human Cardiac Organoids Identifies a Requirement for the Mevalonate Pathway in Cardiomyocyte Proliferation 0.95
Next-generation sequencing of control and schizophrenia hiPSC derived NPC 0.95
Genome-wide transcriptome profiles in Control and Schizophrenia hiPSC-dervied NPC [RNA-seq] 0.95
Histone acetyltransferase p300 induces de novo super-enhancers to drive cellular senescence [RNA-seq] 0.93
Histone acetyltransferase p300 induces de novo super-enhancers to drive cellular senescence 0.93
RNA sequencing from FOXM1 knockout HEK293T cells reconstituted with FOXM1 isoforms a, b and c. 0.92
Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment 0.9
Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq] 0.9
Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B-cell Responses to Influenza Hemagglutinin 0.9
Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia (RNA-Seq of HSCe) 0.9
TOP2B disturbed the quality of human oocytes with advanced maternal age 0.89
A Distinct Epigenetic Program Underlies the 1;7 Translocation in Myelodysplastic Syndromes (MDS) 0.88
Expression Analysis of dic(1;7)(q10;p10) in Myelodysplastic Syndromes (MDS) compared to control cohort and therapy-related Myeloid Neoplasms (t-MN) 0.88
Expression profile of GIST48 cells with siETV1 or siFOXF1 knockdown 0.87
FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST) 0.87
Critical role for Lymphocytes in Producing FLT3LG in Tumors and Driving Checkpoint Therapy-Receptive Immune Microenvironments 0.86
Increased Neanderthal ancestry in genomic regions associated with lipid catabolism in contemporary Europeans 0.86
Impact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol 0.86
RNA-Seq in PWS iPSC-derived neurons 0.85
RNA-seq of synchronized S phase or G2 phase cells treated with an ATR inhibitor 0.84
Genome-wide modelling of transcription kinetics reveals patterns of RNA processing delays 0.83
Transcriptomic analysis of iPSC and ESC challenged with atmospheric or physiological oxygen 0.83
The age and genomic integrity of neurons after cortical stroke in humans 0.82
Ets homologous factor has critical roles in epithelial dysfunction in airway disease 0.82
Ets homologous factor has critical roles in epithelial dysfunction in airway disease [RNA-seq] 0.82
eRNA: A graphic user interface-based tool for RNA sequencing data analysis [mRNA-Seq] 0.82
eRNA: A graphic user interface-based tool for RNA sequencing data analysis 0.82
Exploring transcriptomic landscapes in red cell populations, in their extracellular vesicles and on single cell level 0.81
RNA-Seq Analysis in purified iPS cell-derived neuronal samples 0.8
Transcriptome analyses of iPSC-derived neural stem/progenitor cells and cerebral organoids from monozygotic twins discordant for schizoaffective bipolar disorder 0.8
RNA-Seq of human induced pluripotent stem cell-derived cardiomyocytes from a cardiomyopathy patient and familial control 0.8
Illumina Human Polycystic Liver Disease and Normal Biliary Stem Cell RNAseq 0.79
Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk [RNA-seq] 0.79
Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk 0.79
Stage-specific regulation of the WNT/β-catenin pathway enhances differentiation of hESCs into hepatocytes 0.77
Identification of metabolically distinct adipocyte progenitor cells in human adipose tissues 0.77
A Basal Stem Cell Signature Identifies Aggressive Prostate Cancer Phenotypes 0.73
Genes significantly down or Up-regulated upon RNF219 knockdown. [RNA-Seq] 0.71
Inhibition of the integrin alpha-V beta-3 reverts the paradoxical effect of levothyroxine replacement during bexarotene therapy in cutaneous T-cell lymphoma 0.71
ZEB1 insufficiency causes corneal endothelial cell state transition and altered cellular processing 0.7
Transcriptome analysis-identified long noncoding RNA CRNDE in maintaining endothelial cell proliferation, migration, and tube formation 0.69
High-Throughput Screening of Human Induced Pluripotent Stem Cell Cardiomyocytes Predicts Tyrosine Kinase Inhibitor Cardiotoxicity 0.69
Tyrosine Kinase Inhibitor Cardiotoxicity 0.69
A RUNX2-mediated Epigenetic Regulation of the Survival of p53 Defective Cancer Cells 0.68
RNA-Seq Analysis in hES/ iPS cell-derived neuronal samples 0.67
Subtle asymmetry of gene expression in embryonic and foetal human brains 0.66
Heterogeneous maintenance of human tissue resident memory T cells based on efflux capacities 0.65
Regulation of Cell Cycle to Stimulate Adult Cardiomyocyte Proliferation and Cardiac Regeneration 0.63
Induction of Cardiomyocyte Proliferation [pz-822_human] 0.63
Transcriptional profiling of LS1034 cells treated with tepoxalin 0.62
single cell RNA-seq from Purkinje cell (ENCSR888LYA) 0.62
Next generation sequencing of the transcriptome in MCF-7 cells with/without SRA knockdown 0.61
A20 regulates canonical wnt-signaling through an interaction with RIPK4 0.6
RNA sequence of mRNA in HUVEC cells after depleting EGFL6 0.59
RNA-sequencing analysis of human fibrolamellar hepatocellular carcinoma and 4 maturational stages of the human hepatobiliary system 0.59
High-resolution comparative analysis of great ape genomes 0.56
An intramolecular salt bridge linking TDP43’s RNA recognition motifs dictates RNA binding, protein stability and TDP43-dependent neurodegeneration 0.53
C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi’s Sarcoma Associated Herpesvirus (KSHV) 0.52
Genome-wide mapping of DROSHA cleavage sites on primary microRNAs and novel substrates [RNA-seq] 0.52
Genome-wide mapping of DROSHA cleavage sites on primary microRNAs and novel substrates 0.52
ALS implicated protein TDP-43 sustains levels of STMN2 a mediator of motor neuron growth and repair 0.49
The cytokine environment influence on human skin-derived T cells 0.48
An Argonaute phosphorylation cycle promotes microRNA-mediated silencing [polyA RNA-seq] 0.48
WNT signaling memory is required for ACTIVIN to function as a morphogen 0.45
Function and hormonal regulation of GATA3 in human first trimester placentation 0.42
Global reduction in H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas 0.42
Uridylation-mediated RNA quality control pathway in mammalian cytoplasm [RNA-Seq] 0.41
TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs. 0.41
Gene expression in TAL1-driven T-cell ALL in response to TAL1-KD, UTX-KD, and GSKJ4 treatment 0.4
T-cell ALL in response to TAL1-KD, UTX-KD, and GSKJ4 treatment 0.4
Disease modelling of core pre-mRNA splicing factor haploinsufficiency 0.38
Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap 0.35
Dilated cardiomyopathy vs Myocarditis 0.35
Tracking transcriptional changes in a species-specific manner during experimental hepatoblastoma progression in vivo 0.35
Effect of nuclear IL-33 on gene expression 0.32
Gene expressions of H9s in different culture systems 0.31
High-throughput RNAi cell viability screen to identify selective targets for EWS-FLI1 positive Ewing sarcoma 0.31
UMI-count modeling and differential expression analysis for single-cell RNA sequencing 0.3
Maternal-biased H3K27me3 correlates with paternal-specific gene expression in the human morula 0.3
RNA-Seq data of NCI-H82 cells expressing a Dox-On pRB (pTripZ RB1) grown in the presence or absence of DOX and then treated with vehicle or AZD2811. 0.3
Class I histone deacetylases HDAC1, 2 and 3 are histone decrotonylases 0.28
RNA-seq transcriptional profiling in primary human erythroid progenitor cells upon shRNA-mediated knockdown of PRC2 core subunits 0.26
ChIP-seq and RNA-seq analysis of PRC2 core subunits in primary human erythroid progenitor cells 0.26
Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [H1 RNA-seq] 0.25
Global transcriptome analysis in the MYCN-amplified neuroblastoma cell line IMR5-75 upon inducible MYCN-knockdown 0.19
Sodium butyrate ameliorates aSyn-induced transcription deregulation and DNA damage 0.19
β-catenin/Tcf7l2 dependent transcriptional regulation of GLUT1 gene expression by Zic family proteins in colon cancer 0.17
Zika virus directly infects human peripheral neurons and induces cell death 0.16
Small-molecule-based Human Genome G4 Profiling Reveals Potential Gene Regulation Activity 0.15
Total RNAseq of human putamen and caudate nucleus tissues in healthy control and Bipolar Disorder individuals 0.14
Dissecting cell composition and cell-cell interaction network of normal human heart tissue by single-cell sequencing 0.14
Transcriptome analysis of the HepG2 cells expressing hepatic transcription factors 0.14
Ribosomal protein RPL26 is the principal target of UFMylation 0.13
RNA-seq of HUVEC ± shRNA knockdown of SENCR 0.11
Altered expression of signaling pathways regulating neuronal excitability in hippocampal tissue of temporal lobe epilepsy patients with low and high seizure frequency 0.11
The Small Molecule ISRIB Reverses the Effects of eIF2α Phosphorylation on Translation and Stress Granule Assembly 0.09
The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment  0.07
RNA-seq and small RNA-seq from WT and ADAR1 knockdown H9 lines and their differentiation to specific types of neurons 0.07
Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: Comparison of gene expression profiling approaches [RNA-Seq] 0.05
Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: Comparison of gene expression profiling approaches 0.05
Multiplex Enhancer Interference Reveals Collaborative Control of Gene Regulation by Estrogen Receptor Alpha Bound Enhancers 0.05
Multiplex Enhancer Interference Reveals Collaborative Control of Gene Regulation by Estrogen Receptor Alpha Bound Enhancers [RNA-Seq] 0.05
Integrated epigenomic and transcriptomic profiling of terminal human erythropoiesis [TMCC2] 0.04
Identification of trans regulators of ADAR and A-to-I RNA editing using RNA-seq 0.03
Unbiased identification of trans regulators of ADAR and A-to-I RNA editing 0.03
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [RNA-Seq_human] 0.02
Human Cord Blood Sorted Live Cell Erythroblasts RNA-Seq 0.02
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation 0.01
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation [RNA-Seq] 0.01
Modulation of nonsense-mediated decay by rapamycin 0.01


Contact Us

For scientific and technical queries contact Butte Lab @UCSF


Cite GENEVA Tool

Manuscript in Preparation