Gene Query: CBR3

Dataset Description Geneva Score
Transcriptome response to 4h IL-1b stimulation of primary chondrocytes 56.39
RNA-seq of PC3 prostate cancer cell line xenografts in mice administered the ghrelin receptor antagonist [D-Lys3]-GHRP-6 or PBS for two weeks 16.76
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (wtRNA-Seq) 11.65
The regulartory role of ZCCHC24 in splicing machinery 11.54
High-depth RNA sequencing of isogenic wild-type, PIK3CA-WT/H1047R and PIK3CA-H1047R/H1047R human iPSCs 9.78
Pomalidomide inhibits PD-L1 induction to promote anti-tumor immunity 9.76
Long non-coding RNAs are central regulators of the IL-1b-induced inflammatory response in human lung fibroblasts 9.75
Dermal endothelial cells of type 2 diabetic patients 8.91
A pooled single-cell genetic screen identifies regulatory barriers in the continuum of the epithelial-to-mesenchymal transition 8.46
Impact of GDF15 expression of ovarian cancer cell on stroma and Cisplatin responses 7.87
Selective suppression of endothelial cytokine production by progesterone receptor [RNA-seq] 6.62
Selective suppression of endothelial cytokine production by progesterone receptor 6.62
Novel Non-catalytic Substrate-selective p38α-specific MAPK Inhibitors with Endothelial-Stabilizing and Anti-inflammatory Activity 6.49
Genome-wide transcriptional response to random aneuploidy in human cells 6.47
Human Treg IL-12 stimulation 6.4
A common cell state in Triple Negative Breast Cancers represents a druggable vulnerability 5.8
Transcriptomic but not genomic variability confers phenotype of breast cancer stem cells 5.76
CD86 regulates a pro-survival signal in myeloma cells 5.76
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells 5.69
RNA-seq of synchronized S phase or G2 phase cells treated with an ATR inhibitor 5.65
Co-expression of CD163 and CD141 Identifies Human Circulating IL-10-Producing Dendritic Cells (DC-10) [RNA-seq] 5.65
Co-expression of CD163 and CD141 Identifies Human Circulating IL-10-Producing Dendritic Cells (DC-10) 5.65
RNA-seq, ChIP-seq and single cell RNA-seq of human skin Langerhans cells 5.64
A Basal Stem Cell Signature Identifies Aggressive Prostate Cancer Phenotypes 5.63
Single-cell transcriptome of human epithelial cells reveals novel insights into early innate immune responses to influenza virus and viral antagonism 5.52
Targeting the androgen receptor N-terminus via the cochaperone Bag-1L 5.42
Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [RNA-seq] 4.85
Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia 4.85
IL-33 activates tumor stroma to promote intestinal polyposis 4.63
CROP-Seq in Primary Human T Cells 4.63
RNA-Sequencing data of Varicella Zoster Virus (VZV)-infected human dermal fibroblasts (HDF) 4.6
Global loss of epigenetic and transcriptional fidility defines a subclass of cancer with immunotherapy resistance 4.46
RNA-seq of human aneuploid cell lines with Trisomy 21 4.39
ETS family proteins bind glucocorticoid receptor: relevance for treatment of Ewing sarcoma 4.34
Neonatal and adult human testis defined at the single-cell level 4.22
Control of prostate tumour growth by the long non-coding RNA GHSROS 4.19
Tumor exosome integrins determine organotropic metastasis 4.11
Gene activation precedes DNA demethylation in response to infection in human dendritic cells 4.07
Gene activation precedes DNA demethylation in response to infection in human dendritic cells 4.07
Transcriptional Signatures of Hypoxic and Inflammatory Renal Epithelial Injury 3.95
Hit-and-run epigenetic editing prevents senescence entry in primary breast cells from healthy donors 3.86
Hit-and-run epigenetic editing prevents senescence entry in primary breast cells from healthy donors [RNA-seq] 3.86
Cooptation of tandem DNA repeats for the control of epithelial-to-mesenchymal transition [RNA-Seq] 3.84
Cooptation of tandem DNA repeats for the control of epithelial-to-mesenchymal transition. 3.84
Identifying a novel candidate diagnostic and prognostic biomarker SPRR3 for oral squamous cell carcinoma via mRNA Sequencing and Bioinformatics 3.77
Effects of human adipose tissue-derived and umbilical cord tissue-derived mesenchymal stem cells in a dextran sulfate sodium-induced mouse model 3.72
Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer 3.72
Human RELA haploinsufficiency results in autosomal dominant chronic mucocutaneous ulceration: the transcriptional profile of RelA haploinsufficient patients 3.69
Ewing sarcoma resistance to SP-2509 is not mediated through KDM1A/LSD1 mutation I 3.68
Lentiviral CRISPR Epigenome Editing of Inflammatory Receptors as a Gene Therapy Strategy for Disc Degeneration 3.68
Chronophin regulates metabolic and transcriptomic features of glioblastoma stem-like cells 3.61
Reprogramming of Tumor-infiltrating Immune Cells in Early Stage of NSCLC 3.6
Single cell analysis of smooth muscle cell phenotypic modulation in vivo during disease in mice and humans 3.49
Single cell analysis of smooth muscle cell phenotypic modulation in vivo during disease in mice and humans [human scRNA-seq] 3.49
Proteostasis by STUB1/HSP70 complex controls sensitivity to androgen receptor targeted therapy in advanced prostate cancer 3.43
Proteostasis by STUB1/HSP70 complex controls sensitivity to androgen receptor targeted therapy in advanced prostate cancer (RNA-Seq) 3.43
Expression levels of genes of NKG2C+ NK cells after in vitro treatment 3.41
Genome-wide profiling of cervical RNA-binding proteins identified HPV regulation of RNASEH2A expression by viral E7 and E2F1 3.34
Global modulation of signaling pathways by SARM RAD140 in AR/ER+ breast cancer xenografts 3.34
Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics. [RNA-seq] 3.3
Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics. 3.3
Transcriptome profiling of CXCR2+ neuroendocrine (NE) tumor cells purified from patients' fresh prostate adenocarcinoma 3.19
MYCi361 regulates MYC target genes 3.14
mRNA and RNC-mRNA deep sequencing of three hepatocellular carcinoma cell lines 3.09
mTOR hyperactivation in Down Syndrome mediates deficits in autophagy induction, autophagosome formation, and mitophagy 3.08
Role of COP1 on MAP kinase transcriptional output in gastrointestinal stromal tumor 3.02
Single cell transcriptome of peritoneal cells 2.98
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (mRNA-Seq) 2.98
Transcriptional impact of MTHFD2 in Human Aortic Endothelial Cells 2.94
Tumors with TSC mutations are sensitive to CDK7 inhibition through NRF2 and glutathione depletion 2.94
Human Treg NaCl stimulation 2.92
Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface 2.9
RNA-seq of human foreskin fibroblast cells lacking RB and/or p130 after doxorubicin treatment 2.87
Designer epigenome modifiers enable robust and sustained gene silencing in clinically relevant human cells 2.85
Designer epigenome modifiers enable robust and sustained gene silencing in clinically relevant human cells [RNA-seq] 2.85
Differential expression analysis of RNA-seq data from melanocytes driven by tumor cell-derived exosomes 2.84
iRNA-seq: Computational method for genome wide assessment of acute transcriptional regulation from total RNA-seq data 2.83
Carcinoma-astrocyte gap junctions promote brain metastasis by cytosolic dsDNA response transfer 2.79
JAK dependent survival of ALK- ALCL 2.76
Analysis of Combined Transcriptomes Identifies Gene Modules Differentially Responding to Pathogenic Stimulation in Vascular Smooth Muscle and Endothelial Cells 2.72
Transcriptome analysis of U87 cells upon LINC00152 knockdown 2.72
Analysis and expansion of the eosinophilic esophagitis transcriptome by RNA sequencing 2.71
Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap 2.68
Sequencing Universal Human Reference RNA by Smart-seq and early barcoding library preparation methods 2.65
Cell-to-cell variation in defective virus expression and effect on host response during influenza virus infection 2.61
RNA-seq of tumor cells following angiopellosis extravasation 2.61
RB tumor suppressor promotes cancer immunity through downregulating PD-L1 expression 2.6
Effect of PDZ domain binding Kinase inhibition using TOPK-32 (called PBKi) on C4-2 cell transcriptome 2.6
The SPOP-containing Complex Functions as an E3 Ligase for SETD2 to Regulate Gene-Specific H3K36me3-Coupled Alternative Splicing 2.56
Gene expression analysis of human CD8+ T cells treated with a DOT1L inhibitor 2.55
Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene (RNAseq) 2.54
Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene 2.54
RNA-SEQ assay for wild type and CRISPR induced endoglin knockout human pulmonary artery smooth muscle cells (PASMC) 2.53
RNA-seq of human foreskin fibroblast cells lacking RB, p130, and p107 treated with doxorubicin. 2.5
High-Throughput Drug Screening identifies Pazopanib and Clofilium tosylate as effective treatments for malignant rhabdoid tumors 2.48
The dynamics of cellular response to therapeutic perturbation using multiplexed quantification of the proteome and transcriptome at single-cell resolution 2.46
IFN-γ Represses M2 Gene Expression in Human Macrophages by Suppressing and Disassembling MAF-binding Enhancers [RNA-seq] 2.45
Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF 2.45
Genome wide mapping of long noncoding (lnc) RNAs in hepatic stellate cells 2.44
Single-cell RNA-seq reveals differentiation of bona fide human pDCs and cDC1s in cultures of cord blood CD34+ progenitors, and a newly identified terminal differentiation step of cDC1s 2.43
Transcriptome analysis of BAP1 knockout and restoration 2.43
Expression profiles of restoration of BAP1 in a BAP1 deficient cell line 2.43
RNA sequencing reveals transcriptional changes after Hippo signaling activation in podocytes 2.42
Joint-specific DNA transcriptome signatures in rheumatoid arthritis [RNA-seq] 2.38
Illumina sequencing of vaginal epithelial cells from women using depot medroxyprogesterone acetate or non-hormonal contraception 2.36
Transcripotome analysis of different locations of hair follicles (bulb, bulge) in androgenetic alopecia 2.34
The Role of Histone H3 Lysine 36 Methylation in Reprogramming of fibroblasts and on Induced Pluripotent stem Cell Generation 2.34
BBBomics - Human Blood Brain Barrier Transcriptomics Hub [RNA-seq] 2.27
BBBomics - Human Blood Brain Barrier Transcriptomics Hub 2.27
RNA-seq data of adipocytes co-cocultured with OVCAR5 in Boyden chamber (4d) 2.25
Identifying lincRNA as prognostic biomarker for clear cell renal cell carcinoma 2.23
Ex vivo Dynamics of Human Glioblastoma Cells in a Microvasculature-on-a-Chip System Correlates with Tumor Heterogeneity and Subtypes 2.22
Expression level comparison under dividing and quiescent states in human primary fibroblasts 2.18
Interleukin-1β induces mitochondrial DAMP production to activate STING-dependent innate immune programs 2.16
Translating transcriptome of cancer cells in situ in mesenchymal-rich tumor microenvironment 2.12
Targets of CDK12 on ZR-75-30 breast cancer cells (RNA-seq) 2.11
Flura-seq identifies organ-specific adaptations in metastasis-initiating cells 2.08
Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells 2.05
Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells [RNA-seq] 2.05
Global transcriptome analysis of WT versus HEB-/- hESCs 2.04
A rare subpopulation of melanoma cells with low expression of metastasis suppressor NME1 has a neural crest-like phenotype and is highly metastatic in vivo 2.04
The effect of PPARG inhibition on human angiomyolipoma cells 2.04
Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor 2.0
SETDB1 compacts the inactive X chromosome in part through silencing an enhancer in the IL1RAPL1 gene 2.0
Expression data from human perivascular stem cell-derived extracellular vesicles (PSC-EVs) and PSCs 1.99
Global Gene Expression Changes in Cholangiocytes Treated with TGF-beta 1.95
Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance [RNA-seq] 1.94
RNA deep sequencing analysis of glioma stem cells(GSCs) and non-GSCs 1.94
Integrative analysis of mRNA and lncRNA profiles identified pathogenetic lncRNAs in esophageal squamous cell carcinoma 1.91
Molecular Pathology of adverse local tissue reaction caused by metal-on-metal implants 1.9
Genome-wide analysis of YAP and TFCP2 down-regulated genes in liver cancer cells 1.9
Genome-wide analysis of YAP and TFCP2 occupancy and regulated expression in liver cancer cells 1.9
Thymine DNA Glycosylase as a novel target for melanoma: effect of TDG silencing on gene expression in SK-mel-28 melanoma cells 1.9
Human interleukin-4 treated regulatory macrophages promote epithelial wound healing and reduce colitis in an mouse model 1.9
Toxoplasma gondii remodels the cis-regulatory landscape of infected human host cells [RNA-seq] 1.88
Toxoplasma gondii remodels the cis-regulatory landscape of infected human host cells 1.88
Human embryonic stem cells in E8 and AKIT culture medium 1.88
Growth factor-free, chemically-defined culture system for expansion and derivation of human pluripotent stem cells 1.88
Oncogenic changes and EMT in normal human bile duct epithelial cells are caused by parasite-derived materials and N-nitrosodimethylamine 1.87
Expression changes in melanoma cell lines under BRAFi treatment timepoints [RNA-Seq.CellLine.batch4] 1.87
A single cell reference map for human blood and tissue T cell activation 1.84
Allelic expression mapping across cell lineages reveal repressor disruption among disease SNPs 1.82
RNA-seq of shEZH2 cells 1.82
A code of mono-phosphorylation modulates the function of RB. 1.82
Effect of Toxoplasma gondii efector TgIST on global transcriptome of human foreskin fibroblasts (HFFs) upon type I IFN activation 1.79
Nickel induced transcriptional changes persist post exposure through epigenetic reprograming (ChIP-seq & RNA-seq datasets) 1.78
RNA-Seq analysis of 4N and 2N RPE1 cells following polyploid induction via cytokinesis failure by siRNA knockdown of Anillin [tpo8] 1.76
Transcriptome-wide analysis of the role of HTLV-1 Tax PBM in T-Cells from infected humanized-mice (hu-Mice) 1.76
Chromatin landscape of human visceral and subcutaneous adipocytes 1.74
Transcriptome profiling of influenza virus-infected human bronchial epithelial cells 1.71
Effect of digoxin treatment on the gene and alternative splice expression in human pluripotent stem cells- derived mesenchymal stem cells 1.65
MiR-26 dampens IL-6 production by down-regulating TNF-a/NF-kB signaling through silencing HMGA1 and MALT1 and not by directly targeting IL-6 mRNA 1.65
Comprehensive Epigenetic Landscape of Rheumatoid Arthritis Fibroblast-like Synoviocytes [RNA-seq] 1.64
Comprehensive Epigenetic Landscape of Rheumatoid Arthritis Fibroblast-like Synoviocytes 1.64
UBC9 knockdown in bladder cancer T24 cell lines 1.63
Understanding the Mechanistic Contribution of Herbal Extracts in Compound Kushen Injection with Transcriptome Analysis 1.62
Regulation of cellular heterogeneity and rates of symmetric and asymmetric divisions in triple-negative breast cancer 1.62
Genome-wide expression from the esophageal biopsies of subjects with and without eosinophilic esophagitis 1.61
Transcriptomic alterations in fibroblasts from Parkinson's disease patients carrying Parkin mutations 1.61
RNA-Seq analysis of 4N and 2N RPE1 cells following polyploid induction via cytokinesis failure or Aurora kinase inhibition [tpo3] 1.6
Rational targeting of RNA structure in SMN2 transcripts reverses Spinal Muscular Atrophy molecular phenotypes 1.59
Endogenous interaction profiling identifies DDX5 as an oncogenic coactivator of transcription factor Fra-1 [RNA-seq] 1.58
Endogenous interaction profiling identifies DDX5 as an oncogenic coactivator of transcription factor Fra-1 1.58
RNA-seq analysis upon ARID1B overexpression 1.58
The X-linked DDX3X RNA helicase dictates translation re-programming and metastasis in melanoma 1.58
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and AXL-/- astrocytes Transcriptomes 1.56
Prostate Cancer Cell RNA-Seq (PC3E and GS689.Li) 1.55
Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence [RNA-seq] 1.53
Large-Scale Atlas of Mutant IDH1-Dependent Chromatin State Reprogramming, Reversibility, and Persistence 1.53
SEUSS: A scalable screening platform to assess transcriptomic and fitness effects of transcription factor overexpression 1.52
Effect of 48h treatment with 100nM GSK2879552 on T-ALL cell lines HSB2 and RPMI8402 1.51
Gene expression profile of multiple myeloma cell lines treated with CB-5083 1.5
Discovering the anti-cancer potential of non-oncology drugs by systematic PRISM profiling 1.48
Changes in human endometrial gland transcriptome over the window of implantation 1.48
Induction of human hemogenesis in adult fibroblasts by defined factors and hematopoietic co-culture 1.44
Single cell RNA-seq resolves lineage-specific activation dynamics of human blood and tissue T cells 1.42
Single-cell RNA-seq reveals novel cell differentiation dynamics during human airway epithelium regeneration 1.42
Transcription elongation factors are in vivo-specific cancer dependencies in glioma 1.41
RNA-seq Profiles in Transcription elongation factors are in vivo-specific cancer dependencies in glioma 1.41
Acriflavine inhibits the epithelial-to-mesenchymal transition in vitro in liver and pancreatic cancer cells (part of study on PANC1 cells treated with CoCl2) 1.4
Silencing p300 in MCF7 cells to study expression and alternative splicing 1.4
Functional role of SLIT2 and ROBO1 in trophoblasts 1.4
Effects of NSUN2 deficiency on the mRNA 5-methylcytosine modification and gene expression profile in HEK293 cells (RNA-Seq) 1.4
hTERT promotes cell adhesion and migration independent of telomerase activity 1.39
TWIST1-induced microRNA-424 drives an intermediate epithelial-to-mesenchymal transition that opposes metastasis 1.38
Proliferation-correlated expression 1.38
Genome models integrating chromatin contacts and nuclear lamin-genome interactions reveal implications of laminopathy-causing lamin mutations on genome architecture 1.36
Expression profiling by high throughput sequencing of tumors derived from human prostate epithelial cells transformed with the oncogenes N-Myc and myrAKT1. 1.36
Sequencing of messenger RNAs with N6-methyladenosine modifications in acute myeloid leukemia (AML) with and without forced expression of FTO 1.34
3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations 1.34
The Human Testis Cell Atlas via Single-cell RNA-seq (Healthy men scRNA-seq data set) 1.34
Genome-wide profiling of siRNA targeting EWS-FLI1 in TC32 Ewing sarcoma cell line 1.33
RNA-seq and Hi-C sequencing of neutrophil-like cells migrated through large or small pores 1.33
Migration through a small pore disrupts inactive chromatin organisation in neutrophil-like cells [RNA-seq] 1.33
Single-cell analysis of adult human ovary using 10X genomics 1.32
Toxoplasma gondii infection of human retinal pigment epithelial cells 1.31
LINE-1 elements are derepressed in senescent cells and elicit a chronic Type-I Interferon response 1.31
Coordinated control of senescence by lncRNA UCA1 and a novel CAPERα/TBX3 co-repressor 1.3
Transciptome profiling of NoDice and RNaseIII null cells prior to and after polyIC treatment 1.3
RNA-seq of HBV-infected Primary Human Hepatocytes treatment by Tazarotene 1.3
Effect of 48h treatment with 100nM GSK2879552 on T-ALL cell lines LOUCY and PEER 1.29
The E3 ubiquitin ligase HectD1 suppresses EMT and metastasis by targeting the +TIP protein ACF7 for degradation 1.29
E2F1 orchestrates transcriptomics and oxidative metabolism in Wharton’s jelly derived mesenchymal stem cells from growth-restricted neonates 1.28
Identification of long noncoding RNAs regulated by p53 1.27
Transcriptional control of subtype switching ensures adaptation and growth of pancreatic cancer 1.24
Effect of estrogen (E2) treatment on the C4-12 relative to the MCF7 cells 1.24
RNA-seq of YB5 and MCF7 treated with different doses of decitabine 1.21
ZMYND8 reads the dual histone mark H3K4me1-H3K14ac to antagonize the expression of metastasis-linked genes 1.21
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and PVT1 Knockdown by CRISPRi in MDA-MB-231 human breast cancer cell line 1.2
Promoter of lncRNA gene *PVT1* is a tumor suppressor DNA element 1.2
Genes regulated by SPDEF or FOXA3 in A549 lung carcinoma cells [RNA-seq] 1.2
Recruiting Endogenous ADARs with Antisense Oligonucleotides to Reprogram the Transcriptome 1.2
RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas 1.18
Large-scale expansion of human iPSC-derived skeletal muscle cells for disease modeling and cell-based therapeutic strategies 1.17
Functional role of CPPED1 in trophoblasts. 1.17
Mammalian Hbs1L deficiency causes Pelota depletion and is associated with a unique phenotype 1.17
c-Jun promotes cell migration and drives expression of the motility factor ENPP2 in soft tissue sarcomas [RNA-Seq] 1.16
c-Jun promotes cell migration and drives expression of the motility factor ENPP2 in soft tissue sarcomas 1.16
Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells [RNA-seq] 1.15
Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells 1.15
Profiling of protrusion-enriched RNAs from human breast cancer cell line MDA-MB-231 1.15
RNA-seq of cells with TET1 knockout 1.14
The Promyelocytic Leukemia Zinc Finger Dependent Transcriptome during Human Endometrial Stromal Cell Decidualization 1.13
Analysis of active enhancers and direct androgen receptor target genes in VCaP prostate cancer cells 1.13
Copper Regulation of HIF-1 Transcription Activity 1.12
Copper Regulation of HIF-1 Transcription Activity [RNA-seq] 1.12
RNA-Seq analysis RPE1 cells following exposure to Nutlin-3 to identify target genes of p53 [tpo12] 1.11
PHF20 readers link methylation of histone H3K4 and p53 with H4K16 acetylation 1.1
Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration 1.08
Next Generation Sequencing of human SMA and healthy control Motor Neurons 1.08
GATA3-mediated chromatin reprogramming in breast cancer cells 1.07
MUC1-C represses the RASSF1A tumor suppressor and activated Kras signaling in human carcinoma cells 1.07
Binding to SMN2 pre-mRNA-Protein complex elicits specificity for small molecule splicing modifiers 1.06
Random mono-allelic expression in MECP2-mutated cells 1.05
Comparative gene expression profiling of human primary endotheliocytes cultivated on polyurethane-based electrospun 3D matrices and natural decellularized vein 1.04
Overexpression of NFIB and YBX1 in MCF-7 cells 1.04
Endometrial epithelial cell transcriptome response to co-culture with adipose stromal cells 1.03
Next generation sequencing of human hepatic stellate cell line, LX-2 treated with recombinant human TGF-β1, with DMSO or ML290 (5 µM) for 72h. 1.02
Androgen receptor functions as transcriptional repressor of Cancer Associated Fibroblast (CAF) activation [RNA-seq] 1.01
Androgen receptor functions as transcriptional repressor of Cancer Associated Fibroblast (CAF) activation 1.01
Short-term effect of Boost versus Radical doses of Intraoperative electron Radiotherapy in breast cancer tumor bed using high-throughput approaches 0.99
Transcriptome analysis of ECFCs treated with GSK-343 and Panobinostat 0.99
Generation of targeted homozygosity in the genome of human induced pluripotent stem cells 0.98
Acriflavine inhibits the epithelial-to-mesenchymal transition in vitro in liver and pancreatic cancer cells (part of study on HepG2) 0.97
Characterization of transcriptomics landscape in HUVEC cells exposed to oxidative stress (Total RNA) 0.97
Deletions in the ATAD3 gene cluster cause cerebellar developmental defects with mitochondrial DNA abnormalities owing to local cholesterol insufficiency 0.96
Gene expression profiles of primary human NK cells before and after expansion on CSTX002 feeder cells, with and without IL-21 stimulation 0.96
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity 0.96
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin 0.96
Identification of Nrf2 regulated genes by RNA sequencing 0.96
Nrf2 regulated genes in A549 cells 0.96
Therapeutic targeting of KDM1A/LSD1 in Ewing sarcoma engages the ER-stress response II 0.95
Inhibition of TNBC metastasis by Gpx1 0.95
In Vitro and In Vivo Modulation of Alternative Splicing by the Biguanide Metformin. 0.95
Loss of endometrial plasticity in recurrent pregnancy loss 0.95
Loss of endometrial plasticity in recurrent pregnancy loss (RNA-Seq) 0.95
Oncogenic MYC induces a dependency on the spliceosome in human cancer 0.94
Discovery of naturally occurring ESR1 mutations during acquisition of resistance to endocrine therapy in widely used estrogen receptor positive breast cancer cell lines 0.94
Discovery of naturally occurring ESR1 mutations during acquisition of resistance to endocrine therapy in widely used estrogen receptor positive breast cancer cell lines [RNA-Seq] 0.94
Modulation of gene transcription and epigenetics of colon carcinoma cells by bacterial membrane vesicles 0.93
Genome-wide RNA deep sequencing of CAL-101 or AKTi primed human T cells in comparison to traditionally expanded T cells 0.93
Human muscle-derived CLEC14A-positive cells regenerate muscle independent of PAX7 0.92
Endothelial TGFb signaling drives vascular inflammation and atherosclerosis 0.92
Endothelial TGFb signaling drives vascular inflammation and atherosclerosis [bulk RNA-Seq] 0.92
RNA-seq analysis of uveal melanoma cells treated with FR900359 0.92
Activation of a SOX2-dependent transcriptional regulatory circuit drives glioblastoma. 0.92
Evolved Labels of Placental Invasion in Human and Bovine Endometrial Stroma 0.92
Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling 0.91
Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling (mRNA) 0.91
Transcriptomic changes mediated by β-amyloid in human aortic endothelial cells (HAOEC) 0.91
CD48-dependent protective autophagy in conventional human T cells promotes restimulation-induced cell death resistance 0.91
Organoids derived from directly reprogrammed human hepatocytes for modeling liver cancer initiation 0.9
Global transcriptional profiling changes upon knockdown of LKB1 in human glioblastoma cell lines 0.9
Expression profile of Lo19S state cells in the presence and absence of bortezomib treatment 0.89
Transcriptome analysis of human embryonic stem cells (hESCs) and human fibroblasts upon rapamycin 0.88
Hit-and-run' programing of CAR-T cells using mRNA nanocarriers 0.88
Zika virus infection reprograms global transcription of host cells to allow sustained infection 0.88
Biased Expression of the FOXP3Δ3 Isoform in Aggressive Bladder Cancer Mediates Differentiation and Cisplatin Chemotherapy Resistance 0.87
Transcriptomic analysis of human coronary artery endothelial cells stimulated with TNF-alpha in the presence and absence of ACSL3 siRNA 0.87
RNA-sequencing based transcriptome-wide expression profiling of Cynomolgus monkey and human IPSCs in vitro differentiated into endothelial cells 0.87
α Cell Function and Gene Expression Are Compromised in Type 1 Diabetes 0.85
TCF21 and Aryl-hydrocarbon receptor gene cooperate to activate a pro-atherosclerotic gene expression program 0.85
Polysome-associated mRNA profiling of cancer cells in response to CXCL12 and IGF1 0.85
Transcriptome Analysis and Functional Identification of Adipose-Derived Mesenchymal Stem Cells in Secondary Lymphedema 0.85
TRIM24 is an oncogenic transcriptional co-activator of STAT3 in glioblastoma 0.84
UPA-Seq: Prediction of functional lncRNAs using the sensitivities to UV-crosslinking 0.83
Identification of global regulators of T-helper cell lineage specification 0.81
Identification of global regulators of T-helper cell lineage specification (RNA-Seq) 0.81
ZNF599 and DNMT3A coordinately control nuclear envelope organization by repression of SUN4 expression 0.81
Analysis of gene expression, motif and pattern of m6A modified region and m6A enrichment level in Ocular melanoma and Melanocyte cell lines. Gene expressin analysis of METTL3 knock down in PIG1, ALKBH5 knock down and HINT2 over expression in OCM1. 0.81
Genome-wide chromatin analysis of Ewing sarcoma (RNA-seq) 0.8
Genome-wide chromatin analysis of Ewing sarcoma 0.8
Involvement of Condensin in Cellular Senescence through Gene Regulation and Compartmental Reorganization 0.8
Precise Gene Editing Preserves Hematopoietic Stem Cell Function Following Transient p53-Mediate DNA Damage Response 0.8
Gene expression changes due to PARP knockdown in human cells 0.8
Identification of alternatively spliced transcripts in brain metastatic derivatives of MDA-MB-231 breast cancer cells in response to RBM47 expression 0.8
The identification of RBM47 binding sites and RBM47-dependent alternative splicing events in brain metastatic breast cancer cells 0.8
EGR1-controlled transcriptome of T HESCs 0.79
Energy Metabolism during Anchorage-Independence 0.77
The RNA-binding protein RBM47 suppresses metastatic breast cancer progression 0.76
Uridilation by TUT4/7 restricts retrotransposition of human Line-1s 0.76
Total RNA was extracted from three samples of CD33 CAR or control T cells from three different donors 0.76
Patient Derived Xenograft for Delivery of Precision Medicine in Castrate Resistant Prostate Cancer 0.75
CHD1 regulates cell fate determination by activation of differentiation-induced genes 0.75
Allogeneic mature human dendritic cells generate superior alloreactive regulatory T cells in the presence of IL-15 0.74
A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [human cell line RNA-seq] 0.74
A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation 0.74
Increased Serine and One Carbon Pathway Metabolism by PKCl/i Deficiency Promotes Neuroendocrine Prostate Cancer [RNA-seq] 0.73
Increased Serine and One Carbon Pathway Metabolism by PKCl/i Deficiency Promotes Neuroendocrine Prostate Cancer 0.73
Measuring the effect of MYC on transcription during the DNA double-strand break response by RNA-seq of newly synthesized transcripts 0.73
MicroRNA (miR)-211 loss promotes metabolic vulnerability and BRAF inhibitor sensitivity in melanoma 0.73
Gene expression profile in breast cancer cell lines using RNA sequencing 0.73
ChIP-seq and RNA-seq analysis of KMT2D-silenced metastatic melanoma cells 0.72
Time-dependent regulation of cellular programming of monocytes by NCOR2 [RNASeq_TK] 0.71
Image based identification and targeting of cancer stem cells in pancreatic adenocarcinoma (PDAC) 0.71
Defective transcription elongation in a subset of cancers confers immunotherapy resistance (human cell lines RNA-Seq) 0.71
The Polycomb Repressor Complex 1 Drives Double-Negative Prostate Cancer Metastasis by Coordinating Stemness and Immune Suppression 0.71
Transcriptome wide analysis of classically and alternatively activated macrophages 0.71
Brain organoids reproducibly generate the cellular diversity of the human cerebral cortex 0.7
DNMT and HDAC inhibitors globally induce cryptic TSSs encoded in long terminal repeats 0.69
Hypertonic saline attenuates the cytokine-induced pro-inflammatory signature in primary human lung epithelia 0.69
Tamoxifen Resistance in Breast Cancer is Regulated by the EZH2-ERa-GREB1 Transcriptional Axis 0.69
RNAseq Study in CC-671 Treated Cal-51 Cells 0.69
Activin/Smad2-induced H3K27me3 reduction is crucial to initiate mesendoderm differentiation of ES Cells 0.69
Generation and functional characterization of MDSC-like cells 0.69
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process 0.68
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process (RNA-seq) 0.68
Time-dependent regulation of cellular programming of monocytes by NCOR2 [RNASeq_KD] 0.68
Dissecting the single-cell transcriptome network underlying gastric premalignant lesions and early gastric cancer [10x genomics] 0.67
circRNA profile in hypopharyngeal cancer 0.67
Does osteogenic potential of clonal human bone marrow mesenchymal stem/stromal cells correlate with their vascular supportive ability? 0.67
The Chromatin-Looping Factor ZNF143 Engages at Looping Promoters to Favor the Estrogen Response in Breast Cancer 0.67
The Chromatin-Looping Factor ZNF143 Engages at Looping Promoters to Favor the Estrogen Response in Breast Cancer (RNA-seq) 0.67
TNFα Signaling Exposes Latent Estrogen Receptor Binding Sites in Breast Cancer Cells 0.66
TNFα Signaling Exposes Latent Estrogen Receptor Binding Sites in Breast Cancer Cells [GRO-seq] 0.66
Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma 0.65
Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma [RNA-Seq] 0.65
Genome-wide RNA-sequencing (RNA-seq) of benign and malignant prostate cell lines without and with androgen (R1881) stimulation. 0.65
Comparative Transcriptomic Analysis of Hematopoietic System Across Species by Microwell-Seq 0.65
Integrin signaling regulates YAP/TAZ to control skin homeostasis 0.64
Epigenetic alterations affecting transcription factors and signaling pathways in stromal cells of endometriosis 0.64
Epigenetic alterations affecting transcription factors and signaling pathways in stromal cells of endometriosis: Expression data (RNA-seq) 0.64
The effect of very-high-molecular-mass hyaluronan (vHMM-HA) on IMR90 transcriptome 0.63
Compare of gene expression between p16INK4A positive and negative regions of colon cancer from five patients 0.62
H1609088 Human RNA-Sequencing 0.62
The ETS transcription factor ELF1 regulates a critical, broadly antiviral program distinct from the type I interferon response 0.6
The ETS transcription factor ELF1 regulates a critical, broadly antiviral program distinct from the type I interferon response 0.6
KSDM1b Role in Ewing Sarcoma 0.59
Developing a Novel Two-Dimensional Culture System to Enrich Human Prostate Luminal Progenitors That Can Function as a Cell of Origin for Prostate Cancer 0.58
RNA sequencing of lesional and nonlesional skin from patients with atopic dermatitis 0.58
Global gene expression analysis of human monocyte-derived dendritic cells (DCs) treated with HMGN1 (N1) and R848 alone or in combination. 0.58
Transcriptomic analysis of cultured isogenic myotonic dystrophy type 1 myoblasts with and without the DMPK CTG repeat 0.57
Characterization and therapeautic application of mesenchymal stem cells with neuromesodermal origin from human pluripotent stem cells 0.57
Novel mutations segregating with Complete Androgen Insensitivity Syndrome and their molecular characteristics. 0.57
mRNA differential expression analysis in a human ex vivo model of chronic wounds 0.57
Normal stroma suppresses cancer cell proliferation via mechanosensitive regulation of JMJD1a-mediated transcription [RNA-Seq] 0.57
Normal stroma suppresses cancer cell proliferation via mechanosensitive regulation of JMJD1a-mediated transcription 0.57
RNAseq of Extracellular vesicle RNAs and cellular RNAs from HPASMCs with or without TGF-b1 or BMP4 treatment 0.55
RNAseq data from Mesenchymal stem cells treated with TCDD or 1-methyl tryptophan 0.55
ICE1 promotes the link between splicing and nonsense-mediated mRNA decay 0.55
RNA-sequencing analysis of CD4 T cells following ipilimumab therapy 0.55
Genome-wide maps of transcriptomic and epigenomic state in melanoma cell lines 0.54
TALEN-based knockout of mir-141 and mir-200c in SK-BR-3 cells 0.54
Gene expression profile of regenerated CD8αα T cells and CD8αβ T cells from LMP2 T-iPSCs 0.53
BMS-470539 on human synovial fibroblasts 0.53
Wnt1 silences CC/CXC motif chemokine genes in dendritic cells and induces adaptive immune resistance in lung adenocarcinoma 0.53
Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B-cell Responses to Influenza Hemagglutinin 0.52
Differential gene expression analysis between proliferating and quiescent human dermal fibroblasts 0.52
Ewing sarcoma resistance to SP-2509 is not mediated through KDM1A/LSD1 mutation II 0.51
Metabolism as an early predictor of DPSCs aging 0.51
RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients 0.51
The histone H3.3K36M mutation reprograms the epigenome of chondroblastomas 0.5
In vivo genome editing restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers 0.5
Expression analysis of PC3 cells treated with scramble AON or AON directed against MBNL1 0.49
BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage (RNA-seq) 0.49
BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage 0.49
Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid. 0.48
Genome-wide transcriptome profiling of NEDD9-regulated genes using RNA-seq 0.48
Direct interaction of MYCN and p53 regulate transcriptional responses in neuroblastoma 0.47
Direct interaction of MYCN and p53 regulate transcriptional responses in neuroblastoma [RNA-Seq] 0.47
RNA-Seq analysis of proliferating 4N and 2N RPE1 cells derived from single cell clones following inhibition of Aurora B to induce polyploidization [tpo10] 0.47
Transcriptomic analysis to functionally map the intrinsically disordered domain of EWS/FLI [Experiment 1] 0.47
KLF4 as a rheostat of osteolysis and osteogenesis in prostate tumors in the bone 0.47
The transcription and translation landscapes during human cytomegalovirus infection reveal novel host-pathogen interactions 0.46
Exploiting Prmt5-orchestrated intron detention signatures to treat splicing-addicted malignant glioma tumors 0.46
Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis 0.46
High-resolution comparative analysis of great ape genomes 0.46
Comprehensive RNA sequencing of healthy human endometrium at two time points of the menstrual cycle 0.45
Poly(A)-ClickSeq resolves CF25-mediated alternative poly-adenylation, HeLa 0.44
Next Generation Sequencing (RNA-Sequencing) for the analysis of RUNX3 targets in H460, H460-ERT2-RUNX3 WT and H460-ERT2-RUNX3 MT(K94/171R mutation) 0.44
The transcriptome of human endometrial mesenchymal stem cells under TGFβR inhibition reveals improved potential for cell-based therapies 0.44
DAOY-Notch1/Notch2 knockout: transcriptome comparison 0.44
BACH2 in human plasma cell fate decision 0.43
Transcriptomic analysis of frontal fibrosing alopecia 0.43
miRNAs affected by antagomiR-17 treatment 0.42
Transcriptome sequencing analysis of BRAF-mutant melanoma metastases. 0.42
RNA-seq from primary skin fibroblasts, derived of matched pairs of middle and late donor age 0.42
Aging signatures developed from a longitudinal study design are dominated by reduced transcription of genes involved in protein synthesis. 0.42
Hepatocyte maturation 0.4
SF3B1 Degron knockdown RNA-seq 0.39
Patient-derived xenograft models of non-small cell lung cancer for evaluating targeted drug sensitivity and resistance 0.38
Single Cell RNA-sequencing of cell types isolated by FACS from normal human prostates 0.38
RNA-Seq analysis of human colorectal cancer with liver metastasis 0.37
Dissecting cell composition and cell-cell interaction network of normal human heart tissue by single-cell sequencing 0.36
RNA binding protein CPEB1 remodels host and viral RNA landscapes [RNA-Seq] 0.36
Single-cell Transcriptomics reveals multi-step adaptations to endocrine therapy 0.36
Long non-coding RNA TYKRIL controls pericyte function and survival in the cardiovascular and central nervous system through regulation of p53 activity and PDGFRß expression 0.36
Gene expression of thyroid cancer cell lines 0.35
RNA-seq analysis of SKMEL28 melanoma cells following DIRC3 and IGFBP5 ASO knockdown 0.35
RNA-seq of Human neck of femur (NOF) fracture hip and osteoarthritic (OA) cartilage 0.34
Long noncoding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells 0.34
FOXP3 protects conventional human T cells from premature restimulation-induced cell death 0.34
APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa 0.34
DDX54 regulates transcriptome dynamics during DNA damage response [RNA-seq2] 0.33
ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence 0.33
ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence [RNA-Seq] 0.33
Mutational landscape of splicing genes and functional consequences across 33 cancer types 0.32
RNA-sequencing analysis of glucose and acetate regulated transcripts in glioblastoma cells 0.32
Receptor tyrosine kinase signaling promotes post-embryonic morphogenesis and survival of glia and neural progenitor cells 0.31
Transcriptome of invasive mucinous adnocarcinoma of the lung and adjacent normal lung tissues from 6 patients based on RNA-seq method 0.3
Activating Transcription Factor 4 modulated TGFb-induced aggresiveness in triple negative breast cancer vis SMAD2/3/4 and mTORC2 signaling 0.3
Defective transcription elongation in a subset of cancers confers immunotherapy resistance 0.3
Identification of long noncoding RNAs in T-ALL cell lines 0.3
RNA editing in nascent RNA affects pre-mRNA splicing 0.29
p63 establishes epithelial enhancers de novo at critical craniofacial development genes 0.29
Expression profiling of converted and control dermal BJ fibroblasts 0.29
In search for materials able to be colonized by a normal endothelium: сharacterization and NGS gene expression profiling of human primary endotheliocytes cultivated on electrospun 3D matrices 0.28
RNA-sequencing of mRNAs from control and CAP-D3 deficient Salmonella infected HT-29 cells 0.28
A comprehensive single cell transcriptional landscape of human hematopoietic progenitors 0.28
Inhibition of ERG Activity in Patient Derived Prostate Cancer Xenografts using the Small Molecule Inhibitor YK-4-279 0.28
Identifying transcripts that are transcriptinoally regulated by CBFB and RUNX1 using RNAseq 0.27
RNA sequencing quantitative analysis of RNA editing levels in ADAR1, ADAR2, AIMP2 overexpression and wild type HEK293 cells 0.26
Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome 0.26
Generation and persistence of human tissue-resident memory T cells in lung transplantation 0.26
Epidermal growth factor activates β-catenin via integrin-linked kinase to control proliferation of mesenchymal stromal cells. 0.26
Enhancer Activation Requires Trans-Recruitment of a Mega Transcription Factor Complex (Gro-seq) 0.25
Enhancer Activation Requires Trans-Recruitment of a Mega Transcription Factor Complex 0.25
Analysis of transcriptome changes following SOX2 knockdown in three different Ewing sarcoma cell lines 0.25
Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution 0.25
RNA sequencing and pathway analysis identify important pathways involved in hypertrichosis and intellectual disability in patients with Wiedemann-Steiner syndrome 0.25
RUVBL1/RUVBL2 ATPase Activity Drives PAQosome Maturation, DNA Replication and Radioresistance in Lung Cancer 0.23
Ribosome Incorporation into Somatic Cells Promotes Lineage Transdifferentiation towards Multipotency [RNA-Seq] 0.23
Ribosome Incorporation into Somatic Cells Promotes Lineage Transdifferentiation towards Multipotency 0.23
Identification of the role of polydom in neurofibromas 0.22
Identification of a Cell-of-Origin for Fibroblasts Comprising the Fibrotic Reticulum in Idiopathic Pulmonary Fibrosis 0.22
Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner 0.22
Prolyl Hydroxylase Substrate Adenylosuccinate Lyase Is An Oncogenic Driver In Triple Negative Breast Cancer 0.22
polyA RNA Sequencing Analysis of HTR-8/SVneo cells after lnc-SLC4A1-1 overexpression 0.22
RNAseq of Breast cancer PDX samples 0.22
Transcriptional profile in dermal fibroblasts from patients with collagen VI related muscular dystrophy 0.22
Dissecting cell composition and cell-cell interaction network of human disease heart tissue by single-cell sequencing 0.21
Nickel exposure induces persistent mesenchymal phenotype in human lung epithelial cells through epigenetic activation of ZEB1 0.21
Nickel induced transcriptional changes persist post exposure through epigenetic reprograming (RNA-seq dataset) 0.21
Tissue-specific RNA-seq in human evoked inflammation identifies novel blood and adipose lincRNA signatures of cardio-metabolic diseases 0.21
RNA-Seq and expression data from human adipose tissue 0.21
Integrated Profiling of mRNAs and microRNAs to Identify Potential Biomarkers for Oral Malignant Transformation [mRNA-Seq] 0.2
Integrated Profiling of mRNAs and microRNAs to Identify Potential Biomarkers for Oral Malignant Transformation 0.2
BASP1 modifies the Tamoxifen response 0.2
Transcriptional profiling of SF295 cells following MTF1 knockout by CRISPR/Cas9 0.2
Myeloid-derived suppressor cells facilitie invasion and metastasis of papillary thyroid cancer cells by repressing miR-486-3p 0.2
P120-catenin dependent glioma-cell networks drive growth and diffuse brain infiltration 0.19
Differential effects of estrogen receptor beta isoforms on glioblastoma progression 0.19
CD133hi, Notchhi, DP (double positive) and DN (double negative) in GBML8 and GBML20, both patient-derived glioblastoma tumorsphere cultures 0.19
ML29755 RNA-seq data 0.18
A RUNX2-mediated Epigenetic Regulation of the Survival of p53 Defective Cancer Cells 0.18
Gastrointestinal Stromal Tumor Enhancers Support a Transcription Factor Network Predictive of Clinical Outcome 0.17
Gastrointestinal Stromal Tumor Enhancers Support a Transcription Factor Network Predictive of Clinical Outcome 0.17
Mapping of DHT-responsive or -independent AR-binding sites induced by activated Src in prostate cancer cell lines [RNA-seq] 0.16
Mapping of DHT-responsive or -independent AR-binding sites induced by activated Src in prostate cancer cell lines 0.16
Intrinsic Plasma Cell Differentiation Defects in BENTA Patient B cells 0.16
3’READS+, a sensitive and accurate method for 3’ end sequencing of polyadenylated RNA 0.16
Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs 0.16
Transcriptional changes during naturally-acquired ZIKA Virus infection render dendritic cells highly conducive to viral replication 0.15
Single Cell RNASeq profiling of stromal vascular fraction from Subcutaneous and visceral adipose tissue 0.15
RNA-sequencing of milk cells extracted from pre-partum secretions and longitudinally from mature human milk across the first year of lactation 0.14
RNA sequencing analysis of human podocytes reveals glucocorticoid regulated gene networks targeting non-immune pathways 0.12
Regulating Interleukin-2 activity with engineered receptor signaling clamps 0.11
Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma 0.11
Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma 0.1
Ambient O2 pressure induces NF-kB1/RelA related inflammatory response in human lung epithelial cells in vitro 0.09
Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 4) 0.08
Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates 0.08
Transcriptome analysis of diverse cell types infected with human cytomegalovirus 0.08
Evaluating and comparing the Transcriptome of (human) Hek 293 based cells, expressing either CHD3 or CHD4 0.07
Genome-wide expression analysis of human hTert immortalized fibroblasts after downregulation of MCM2 & MCM7 0.06
An Alternative Splicing Event Amplifies Evolutionary Differences Between Vertebrates 0.06
Identification of a unique gene expression signature in mercury and 2,3,7,8-tetrachlorodibenzo-p-dioxin co-exposed cells 0.06
Next generation sequencing of the transcriptome in MCF-7 cells with/without SRA knockdown 0.05
Effects of Polybrominated Diphenyl Ether (PBDE) Mixture on estrogen receptor positive (ER+) patient-derived tumor xenograft (PDX) model 0.05
Global response to chemotherapy-induced apoptosis 0.05
Gene expression profiling study by RNA-seq for identifying genes associated with epithelial-mesenchymal transition and acquired resistance to ALK inhibitors 0.04
Epithelial-mesenchymal transition and acquired resistance to ALK inhibitors 0.04
DLX3 alters transcriptomic profile of adhesion, cell cycle, and cell death in Squamous Cell Carcinoma Cells 0.04
DLX3-dependent p53 signaling network controls keratinocyte cell cycle and squamous tumor growth 0.04
Effect of nuclear IL-33 on gene expression 0.03
Genomic profiling of biliary tract cancer cell lines reveals molecular subtypes and actionable drug targets 0.03
RNA sequencing of Asthmatic Human Airway Smooth Muscle Cells I 0.03
Dynamics of the human and viral m6A RNA methylomes during HIV-1 infection of T cells 0.02
Bromodomain protein BRD4 is a transcriptional repressor of autophagy and lysosomal function 0.01
RNA sequencing reveals levamisole target genes PTPRZ1 and MDK and their links to interferon pathway in human podocytes 0.01


Contact Us

For scientific and technical queries contact Butte Lab @UCSF


Cite GENEVA Tool

Manuscript in Preparation