Gene Query: CCAR2

Dataset Description Geneva Score
IQGAP3 interacts with Rad17 to activate the MRN/ATM/Chk2 signaling and promote radioresistance in lung cancer 37.3
CD95L derived si- and shRNAs and the CD95L mRNA kill cancer cells through an RNAi mechanism by targeting survival genes [siL3.RNAseq.lg] 28.47
RG/RGG boxes are common binding motifs in RNA-G-quadruplex-interacting proteins 25.65
TMED9-gated CNIH4 and TGFa signaling promotes pro-metastatic states in human primary colon cancer cells 24.51
miR-191 regulates human cell proliferation and directly targets multiple oncogenes [seq] 23.58
Genome wide miR-191 target profile determined by RIP and gene expression profiling 23.58
Transcriptional profile of human STAT1-/- fibroblasts expressing IFI6 or empty control vector 22.28
Krüppel-like Transcription Factor-10 (KLF10) Provides a Negative Feedback Mechanism to Suppress TGFβ-Induced Epithelial-to-Mesenchymal Transition [RNA-Seq] 22.15
Krüppel-like Transcription Factor-10 (KLF10) Provides a Negative Feedback Mechanism to Suppress TGFβ-Induced Epithelial-to-Mesenchymal Transition 22.15
DART-seq: an antibody-free method for global m6A detection 20.27
Montelukast counteracts the influenza virus-induced block in unfolded protein stress response and reduces virus multiplication 19.87
Nuclear receptor RORγ is a targetable master regulator of cholesterol in a subtype of breast cancer 18.62
Enhancing human kidney organoid differentiation from pluripotent stem cells with high-throughput automation 18.28
ENPP1 Mutation Causes Recessive Cole Disease by Altering Melanogenesis 18.2
PTEN suppresses neoplastic transformation of human neural stem cells by transcriptional repression of Pax7 18.18
Nuclear receptor RORγ is a targetable master regulator of cholesterol in a subtype of breast cancer [RNA-Seq] 18.17
TCF7L1 knockdown in pancreatic cancer 18.15
Gene expression analysis of BRD4 knockdown in HT-29 and HCT116 cells 17.64
Diverse Compounds from Pleuromutilin Lead to a Thioredoxin Inhibitor and Inducer of Ferroptosis 17.42
Comparative principles of DNA methylation reprogramming during human and mouse in vitro primordial germ cell specification 17.25
Comparative principles of DNA methylation reprogramming during human and mouse in vitro primordial germ cell specification [Mouse and Human RNA-seq and BS-seq] 17.25
Genome-wide analysis of STAT3 in diffuse large B-cell lymphoma 17.17
Transcriptional profile of human STAT1-/- fibroblasts expressing LY6E or empty control vector 16.24
Lipid degradation promotes prostate cancer cell survival 16.13
RNA expression following TMPRSS11B overexpression or depletion 15.12
Transcriptomic but not genomic variability confers phenotype of breast cancer stem cells 14.81
Genome-wide Analysis of Human Constitutive Androstane Receptor (CAR) Transcriptome in Wild-type and CAR-knockout HepaRG cells 14.78
XPO1 inhibition antagonizes MCL via nuclear retention of IkB: Selinexor demonstrates antitumor activities in both ibr-sensitive and ibr-resistant tumor cells 14.75
Role of XRN2 ribonucleolytic activity in RNA metabolism 14.7
Overexpression of UGT2B17 in MEC1 and JVM2 leukemia cell lines 14.51
Gene expression profile using RNA-seq in WC00060 or SR-0788 cells transfected with siRNA for KPC1 or control 14.3
Targeting EZH2 in MYCN-amplified Neuroblastoma 14.13
Targeting EZH2 in MYCN-amplified Neuroblastoma [RNA-seq] 14.13
Quiescent glioblastoma cells shift to an epithelial-mesenchymal transition-like gene program 13.93
Intrahepatic MAIT cell gene expression revealed by RNA-seq 13.59
Viral determinants in H5N1 influenza A virus enable productive infection of HeLa cells 13.36
RNA-seq Profiles in RBPJ Maintains Brain Tumor Initiating Cells through CDK9-mediated Transcriptional Elongation 13.12
RBPJ Maintains Brain Tumor Initiating Cells through CDK9-mediated Transcriptional Elongation 13.12
WNK1 kinase and the termination factor PCF11 connect nuclear mRNA export with transcription 12.97
REST and Neural Gene Network Dysregulation in iPS Cell Models of Alzheimer’s Disease (RNA-seq data set) 12.91
REST and Neural Gene Network Dysregulation in iPS Cell Models of Alzheimer’s Disease 12.91
RNA sequencing of primary human platelets and in vitro cell lines 12.43
BET bromodomain proteins function as master transcription elongation factors independent of CDK9 recruitment [NET-seq] 12.17
Transcriptional Targeting Of Oncogene Addiction In Medullary Thyroid Cancer 12.15
Transcriptional Targeting Of Oncogene Addiction In Medullary Thyroid Cancer [RNA-Seq] 12.15
AKT Inhibition Promotes Non-autonomous Cancer Cell Survival 12.08
AKT Inhibition Promotes Non-autonomous Cancer Cell Survival [RNA-Seq] 12.08
RNA-seq analysis of AML cells in response to ASLAN003 12.01
ncRNA (non-coding RNA) signature in endothelial cells during hypoxia [RNA-seq] 11.96
ncRNA (non-coding RNA) signature in endothelial cells during hypoxia 11.96
Transcriptome analysis in HT29 and SW480 cells depleted of Prdx2 11.95
Hypoxic regulation of transcription in HUVEC is mediated by EPAS1 11.88
Effect of CRISPR-Cas9 mediated knock-out of integrin alpha2 on the transcriptome of DU145 prostate cancer cell grown as a spheroid culture 11.86
Regulation of highly expressed hCINAP on translatome 11.54
UV-Irradiation Induces a Noncoding RNA that Functionally Opposes the Protein Encoded by the Same Gene 11.49
Global transcriptome analysis of HAP1 cells 10.93
Safeguarding nucleolar homeostasis by CBX4 alleviates senescence and osteoarthritis 10.87
A SIRT1-centered Circuitry Regulates Breast Cancer Stemness and Metastasis 10.69
α Cell Function and Gene Expression Are Compromised in Type 1 Diabetes 10.54
UMI-count modeling and differential expression analysis for single-cell RNA sequencing 10.37
Candidate genes and pathways downstream of PAX8 involved in ovarian high-grade serous carcinoma 10.35
Dual modulation of neuron specific microRNAs and the REST complex promotes functional maturation of induced human adult neurons 10.29
The role of PHF19 in promoting H3K27me3 deposition in multiple myeloma (RNA-Seq) 10.28
The role of PHF19 in promoting H3K27me3 deposition in multiple myeloma 10.28
A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging 10.25
Histone Demethylase-Assisted Somatic Cell Nuclear Transfer Facilitates Derivation of Human Pluripotent Stem Cells 10.19
Differential expression of long non‑coding RNA and mRNA in children with Henoch‑Schönlein purpura nephritis 10.03
Dynamic epigenetic remodeling underlies microRNA-mediated transdifferentiation of human adult fibroblasts into neuronal subtypes 10.01
Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions 9.91
High-throughput sequencing of pluripotent cells 9.89
ETV4 is necessary for estrogen signaling and growth in endometrial cancer cells [RNA-seq] 9.89
ETV4 is necessary for estrogen signaling and growth in endometrial cancer cells 9.89
RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer 9.85
RNAseq of ribosomal fractionation to assess the effect of CBFB on translation regulation 9.85
Epigenomic profiling reveals the key function of histone H3K9 methylation during tumor transformation process 9.84
Effect of FGF13 depletion on the H460 cell line 9.83
Suppression of ribosomal pausing by eIF5A is necessary to maintain the fidelity of start codon selection 9.83
Suppression of ribosomal pausing by eIF5A is necessary to maintain the fidelity of start codon selection (RNA-sequencing) 9.83
Identification of a unique subtype of lung squamous cell carcinoma defined by SOX2 and a neural differentiation factor BRN2 [RNA-seq] 9.82
Identification of a unique subtype of lung squamous cell carcinoma defined by SOX2 and a neural differentiation factor BRN2 9.82
CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression 9.8
Next Generation Sequencing Facilitates Quantitative Analysis of ALDH+ E-BCSC, CD24-CD44+ M-BCSC and Bulk tumor cell Transcriptomes from MC1 and Vari068 PDX models of TNBC 9.77
CRISPR adenine and cytosine base editors with reduced RNA off-target activities [CBE] 9.71
CRISPR adenine and cytosine base editors with reduced RNA off-target activities 9.71
Transcriptomics of human macrophages upon infection with Legionella pneumophila and two isogenic mutants, LamA and AnkH using RNA-seq 9.64
Genome-scale screens identify JNK/JUN signaling as a barrier for pluripotency exit and endoderm differentiation 9.64
A non-catalytic function of carbonic anhydrase IX contributes to the glycolytic phenotype and pH regulation in human breast cancer cells 9.59
Polysome profiling RNAseq of cells transfected with an oligonucleotide targeting the ES6S region of the 40S subunit 9.58
RNA-seq analyses of human prostate cancer cells 9.55
Human iPSC-based Modeling of Late-Onset Disease using Progerin-induced Aging 9.46
RNA-sequencing in irradiated and normal A549 cells. 9.45
Comparison between THP-1 cells obtained from either ATCC or DSMZ biorepository 9.4
Gene expression profile of melanoma cell lines after overexpression or knockdown of KPC1 9.34
FBXW7 modulates stress response by post-translational modification of HSF1 9.3
Transriptional profiling upon heat shock and recovery in cells deficient for FBXW7 and their wild type counterpart. 9.3
MYC dependent mRNA translation shapes gene expression and cell biology 9.29
Transcriptome wide analysis of translation efficiency in MCF7 cells using polysome profiling with and without eIF4A inhibition by hippuristanol treatment 9.25
Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21 (RNA-Seq) 9.24
Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21 9.24
P120-catenin dependent glioma-cell networks drive growth and diffuse brain infiltration 9.21
Discovery of cis-spliced chimeric RNAs between adjacent genes in human prostate cells 9.2
RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients 9.18
ATF4 inhibition by p62 represses stromal metabolic reprogramming and tumorigenesis II 9.16
Replicative senescence is associated with nuclear reorganization and DNA methylation at specific transcription factor binding sites (RNA-seq) 9.04
Replicative senescence is associated with nuclear reorganization and DNA methylation at specific transcription factor binding sites 9.04
Transcriptome sequencing of human coronary artery smooth muscle cell under treatment of nitrated fatty acid 9.04
Base-resolution mapping reveals distinct classes of N1-methyladenosine methylome in nuclear- and mitochondrial-encoded transcripts 9.02
H3B-8800, a novel oral splicing modulator, induces lethality in spliceosome mutant cancers [Nalm-6] 9.0
RNA-seq of HBV-infected Primary Human Hepatocytes treatment by Tazarotene 8.95
Electronic cigarettes 8.9
Cooperation of GRSF1 and the mitochondrial degradosome (hSuv3-PNPase complex) in degradation of mitochondrial RNA 8.89
circRNA-sequencing 8.88
RNA-sequencing of isogenic primary, pre-malignant immortalized, and Ras-transformed human mammary epithelial cells 8.87
Heterogeneous nuclear ribonucleoprotein C1/C2 links transcriptional and splicing actions of 1,25-dihydroxyvitamin D 8.83
circRNA profile in hypopharyngeal cancer 8.82
The immediate impact of exoribonucleolysis on nuclear RNA processing, turnover and transcriptional control revealed by rapid depletion of DIS3, EXOSC10 or XRN2 from human cells 8.76
Next Generation Sequencing Quantitative Analysis of Wild Type and AML1-ETO Related Fusion Circular RNA (F-CircAE) Knockdown Kasumi-1 Cells Transcriptomes 8.6
Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes 8.6
LSD1 mediates AKT activity in PIK3CA mutant colorectal cancer [RNA-Seq] 8.6
LSD1 mediates AKT activity in PIK3CA mutant colorectal cancer 8.6
Estrogen-independent molecular actions of mutant estrogen receptor alpha in endometrial cancer [RNA-seq] 8.58
Estrogen-independent molecular actions of mutant estrogen receptor alpha in endometrial cancer 8.58
circ-ZNF609 regulates G1-S progression in Rhabdomyosarcoma 8.53
Sequencing Universal Human Reference RNA by Smart-seq and early barcoding library preparation methods 8.5
Distinct epigenomes in CD4+ T cells of newborns, middle-ages and centenarians. 8.46
Presence of NAD+-capped RNA in human cells: function and removal by the DXO deNADing Protein 8.45
RNA sequence analysis of stable versus reversible EMT events and the resultant metastases 8.45
A Brain Penetrant Mutant IDH1 Inhibitor Provides In Vivo Survival Benefit 8.39
Reconstruction of the Human Blood-Brain Barrier in vitro reveals a Pathogenic Mechanism of APOE4 in Pericytes 8.35
Mitochondrial hypoxic stress induces RNA editing by APOBEC3G in lymphocytes 8.3
MOF acetyl transferase regulates transcription and respiration in mitochondria 8.29
Landscape and variation of RNA secondary structure across the human transcriptome 8.22
Global Bidirectional Transcription of the Epstein-Barr Virus Genome During Reactivation 8.15
Uridilation by TUT4/7 restricts retrotransposition of human Line-1s 8.07
The effect of REST and its alternatively spliced transcript, REST-003, on breast cancer invasiveness 8.06
Proteotranscriptomic profiling of potential E6AP targets in prostate cancer cells 7.97
The MLL-AF9 and MLL-AF4 oncofusion proteins bind a distinct enhancer repertoire and target the RUNX1 program in MLLr AML 7.96
Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal 7.96
SMYD2 specificly regulate BIX-01294 induced TP53 target genes revealed by RNA-Seq 7.96
Whole Transcriptome RNASeq Data for Cell-Sorted Antibody Secreting Cells (ASC) 7.95
TALENs-mediated gene disruption of FLT3 in leukemia cells: Using genome-editing approach for exploring the molecular basis of gene abnormality 7.93
Major hnRNP proteins act as general TDP-43 functional modifiers both in Drosophila and human neuronal cells. 7.89
Impact of HypERrlnc Knockdown on the human pericyte transcriptome 7.88
Comparative transcriptomic analysis of human and Drosophila extracellular vesicles reveals extensive conservation 7.88
Identification of ZEB1-regulated gene expression changes in HCC827 human lung adenocarcinoma cells 7.85
N6-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis [RNA-Seq] 7.84
mRNA expression profile of Lymphocytes by high-throuput sequencing 7.82
Expression profile of wild type (WT) vs miR-155-/- in FLT3-ITD+ AML (MV4-11) cell lines 7.8
Genome-wide CRISPR-Cas9 screen identifies functionally relevant microRNAs in AML 7.8
Expression profiling of MCF-7 cells with treatment of TCDD 7.73
Expression profiling of MCF-7 cells with 10nM treatment of TCDD 7.73
Gene induction by the USP6 oncogene in response to interferon 7.68
Human Adult Sorted Live Cell Erythroblasts transduced with Sigma shRNA Clone TRCN0000005418 targeting RIOK3 with puromycin selection RNAseq 7.68
Gene expression profiles of isogenic single-cell derived clones of BRAF-mutated SK-MEL-5 melanoma cell lines 7.62
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells [BAA] 7.61
Translocation of dense granule effectors across the parasitophorous vacuole membrane in Toxoplasma-infected cells requires the activity of ROP17, a rhoptry protein kinase 7.59
RNA-seq analysis of HT-29, MCF10A, and MDA-MB-436 cells 7.53
Expanding the Nucleoside Recoding Toolkit: Revealing RNA Population Dynamics with 6-thioguanisine 7.51
Endothelial gene expression analysis 7.48
Total RNA deep sequencing (ribosomal depleted) of human umbilical vein endothelial cells exposed to hypoxia (0.2%) for 12h and 24h or kept under normoxic conditions. 7.48
Gene expression profiling study by RNA-seq in PDX model based diffuse type gastric cancers. 7.46
Discovery of first-in-class reversible dual small molecule inhibitors against G9a and DNMTs with in vivo activity in hematological malignancies [RNA-Seq] 7.43
Discovery of first-in-class reversible dual small molecule inhibitors against G9a and DNMTs with in vivo activity in hematological malignancies 7.43
mRNA expression in human DAOY cells 7.42
IL-6/Stat3-Dependent Induction of Distinct, Obesity-Associated Natural Killer Cells Deteriorates Energy and Glucose Homeostasis 7.42
Quantitative comparison between cellular mRNAs and exosomal mRNAs in human iPSC-derived motor neurons 7.37
DJ-1 is dispensable for human stem cell homeostasis 7.34
Expression profile and potential functions of circulating long noncoding RNAs in acute ischemic stroke in the Southern Chinese Han population 7.25
Transcriptional regulation in pluripotent stem cells by Methyl CpG binding protein 2 (MeCP2) 7.23
RNA-Seq analysis of breast cancer cells after shikonin treatment 7.17
7.15
Next Generation RNA Sequencing Analysis of AMPK Wild Type, AMPKα-KO and AMPKα1-2A U2OS cell Transcriptomes 7.05
Quantitative Analysis of p53 and/or TGFBR2 Knockdown Endothelial Transcriptomes after Irradiation 7.04
Species-specific maturation profiles of human, chimpanzee and bonobo neural cells 7.03
T47D RNA-seq and ChrRNA-seq data 7.03
Arginine citrullination at the C-terminal domain controls RNA Polymerase II transcription 7.03
Genome-wide CRISPR-Cas9 screen identifies druggable synthetic lethality between LSD1 and MTORC1 in MLL-translocated AML 6.98
Accurate annotation of human protein-coding small open reading frames 6.98
TT-Seq captures the human transient transcriptome 6.97
IGF2BP1 promotes SRF-dependent transcription in cancer in a m6A- and miRNA-dependent manner [Huh-7] 6.95
IGF2BP1 promotes SRF-dependent transcription in cancer in a m6A- and miRNA-dependent manner 6.95
RNA-sequencing of human peripheral blood mononuclear cells (PB MNCs) and induced neural progenitor cells derived from PB MNCs 6.94
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice [HCT116_RNA-seq] 6.94
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice 6.94
Landscape of Hematopoiesis Described in Induced Pluripotent Stem Cells and Human Bone Marrow 6.94
Replication defective viral products exploit a cellular pro-survival mechanism to establish persistent infections 6.92
Complementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling 6.87
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing 6.84
Co-expression of CD163 and CD141 Identifies Human Circulating IL-10-Producing Dendritic Cells (DC-10) [RNA-seq] 6.79
Co-expression of CD163 and CD141 Identifies Human Circulating IL-10-Producing Dendritic Cells (DC-10) 6.79
Identification of transcription start sites for human A549 cell line using ReCappable-seq 6.77
Zika infected neural stem cells 6.74
Transcriptome analysis of Zika infected neural stem cells 6.74
Disrupted prenatal RNA processing and myogenesis in congenital myotonic dystrophy 6.73
Genomic profiling of human spermatogonial stem cells [BulkRNA-Seq] 6.71
Diverse AR-V7 cistromes in castration-resistant prostate cancer are governed by HoxB13 6.7
RNA sequencing to study transcriptomic changes in DLD-1 (colorectal adenocarcinoma) cells exposed to soft polyacrylamide matrices (~2 kPa and ~55 kPa) for short time scale of 90 minutes 6.67
Patient-iPSC-derived kidney organoids show functional validation of a ciliopathic renal phenotype 6.65
RNA helicase A is necessary for KIF1Bβ tumor suppression in neuroblastoma 6.58
ZFR coordinates crosstalk between RNA decay and transcription in innate immunity 6.58
EIF1AX-A113 splice and RAS mutations cooperate to drive thyroid tumorigenesis through ATF4 and c-MYC 6.55
Transcriptome-profiling (RNA-seq) and Ribosome-profiling (Ribo-seq) of BJ cells treated with Nutlin-3a, an MDM2 inhibitor, which induces p53. 6.55
Loss of histone macroH2A1 in hepatocellular carcinoma cells promotes paracrine-mediated chemoresistance and CD4+CD25+ T regulatory cells activation 6.5
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors 6.43
Distinct gene expression profile of Huh7 cell lines stably overexpressing CRABP1 or 2 6.39
The X-linked DDX3X RNA helicase dictates translation re-programming and metastasis in melanoma 6.32
Searching for target genes of miR-508/509/506/514 in HCT116 cells 6.28
Modeling the MYC-driven normal-to-tumour switch in breast cancer. 6.27
The transcriptome and chromatin accessbility landscape of mammalian germline 6.24
Expression analysis of primary human monocytes stimulated with an anti-TLR10 mAb (5C2C5) 6.2
Multiple roles for Grainyheadlike transcription factors in the establishment and maintenance of human mucociliary airway epithelium 6.19
RNA-seq analysis and shRNA screen of breast cancer 6.11
RNA-seq analysis of breast cancer 6.11
DHX36 resolves G-rich structures in mRNA untranslated region to allow their translation 6.09
hMTR4 plays a central role in creating balanced nuclear RNA pools for degradation and export II 6.04
In Vitro and In Vivo Modulation of Alternative Splicing by the Biguanide Metformin. 6.03
Genes altered in expression by Cisplatin treatment in lung cancer cell lines 6.03
Adaptive resistance of melanoma cells to RAF inhibition via reversible induction of a slowly-dividing de-differentiated state 6.02
RNA-seq of cultured human kidney peritubular microvascular endothelial cells following exposure to cyclosporine A 5.97
Transcriptomic analysis of primary human T cells and murine RAW 264.7 macrophages 3D cultured in different collagen densities 5.95
Novel Form of JARID2 is Required to Regulate Differentiation in Keratinocytes. 5.94
Metastasis in triple negative breast cancer is dependent on ΔNp63/CXCL2/CCL22-mediated recruitment of myeloid-derived suppressor cells 5.89
Proliferation pause as an early blockade of human cellular reprogramming toward pluripotency [RNA-seq analysis] 5.85
Transcriptomic hallmarks of tumor plasticity and stromal interactions in brain metastasis [MultiDisease] 5.84
Genome-Wide Transcriptional Effects of the Anti-Cancer Agent Camptothecin 5.82
Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins 5.81
Single cell RNA sequencing reveals microglia-like cells in cerebrospinal fluid  during virologically suppressed HIV 5.77
MiR-CLIP capture of a miRNA targetome uncovers a lincRNA H19-miR-106a interaction 5.72
Global host gene expression changes in KSHV+ PEL cells upon KSHV reactivation 5.71
RNA-seq transcriptonal profiling in human primary adult erythroid progenitor cells (ProEs) after shRNA-mediated depletion of TFAM and PHB2 expression 5.7
Global analyses of the effect of different cellular contexts on microRNA targeting (RNA-Seq) 5.67
Global analyses of the effect of different cellular contexts on microRNA targeting 5.67
LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression 5.66
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells 5.63
Differential Gene Expression between MCF10A and MCF7 cells 5.63
Human neutrophil genome during PMA- and E. coli encounter-induced activation 5.6
RNA-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation 5.6
Proteolytic cleavage by taspase1 and the regulation of the stability of MLL1 5.59
Enhancement of Human B Cell Differentiation and Function in Lymph Nodes by the TLR9 Agonist MGN1703 5.59
FMRP-associated MOV10 facilitates and antagonizes miRNA-mediated regulation 5.54
N6-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis[Ribosome Profiling] 5.51
TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes 5.47
Effect of MDK expressing Melanoma cells conditioned media in Human LEC 5.46
Safety profiling of genetically engineered Pim-1 kinase overexpression for oncogenicity risk in human c-kit+ cardiac interstitial cells 5.44
RNAseq of quiescent (Q) and stress induced premature senescent (SIPS) fibroblasts treated with plant extract (1201) from Solidago vigaurea subspecies alpestris 5.42
RNA-seq profiling identifies Androgen Receptor-regulated genes in prostate cancer cells 5.39
Androgen Receptor-regulated genes in prostate cancer cells 5.39
NKX2.2 5.36
RNA-Seq analysis of NKX2.2 knockdown in human pancreatic islets 5.36
Androgen receptor functions as transcriptional repressor of Cancer Associated Fibroblast (CAF) activation [RNA-seq] 5.35
Androgen receptor functions as transcriptional repressor of Cancer Associated Fibroblast (CAF) activation 5.35
Lineage tracing of acute myeloid leukemia reveals the impact of hypomethylating agents on chemoresistance selection 5.34
Identification of alternatively spliced transcripts in brain metastatic derivatives of MDA-MB-231 breast cancer cells in response to RBM47 expression 5.33
The identification of RBM47 binding sites and RBM47-dependent alternative splicing events in brain metastatic breast cancer cells 5.33
Transcriptomic Profiling of Posterior Polymorphous Corneal Dystrophy 5.25
Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells 5.24
Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells (RNA-seq) 5.24
Simultaneous detection and relative quantification of coding and non-coding RNA using a single sequencing reaction 5.18
Selectively targeting bromodomain and extraterminal proteins for degradation as a novel anti-glioblastoma strategy [RNA-seq] 5.16
Transcriptome profiling identified a 3-lncRNA regulatory network in transthyretin against glucose induced hRECs dysfunction 5.15
RNA-seq analysis of umbilical cord blood cells upon knockdown of NAP1L3 5.14
Characterization of human CDK12 and CDK13 in the regulation of RNA processing 5.14
Proximity-CLIP provides a snapshot of occupied cis-acting elements on RNA in different subcellular compartments on a transcriptome-wide scale 5.08
Genome-wide transcriptional profiling of YAP target genes in human endothelial cells 5.07
Chemical Modulation of Glycolysis Regulates the KEAP1-NRF2 Pathway Through a Metabolite-Induced Posttranslational Modification 5.05
A Surveillance System of Active Enhancers by a RACK7-histone Demethylase Complex (RNA-Seq I) 5.0
Nm-seq finds thousands of modified 2’-O-methylation sites in mRNA with base precision 4.99
Effects on gene expression of doxorubicin in human stem cells-derived cardiomyocytes 4.96
Patterned human microvascular grafts enable rapid vascularization and increase perfusion in infarcted hearts 4.96
Genetic disarray follows mutant KLF1-E325K expression in a congenital dyserythropoietic anemia patient 4.95
Gene expression profiling of leukemia cells following asparagine depletion 4.93
m6A-RNA mapping, SND1-RNA binding profile mapping and SND1-depletion in KSHV-infected B-lymphocytes 4.89
RUNX1-ETO and RUNX1-EVI-1 differentially program the chromatin landscape in t(3;21) and t(8;21) AML but share global C/EBP-alpha dysfunction 4.82
RUNX1-ETO and RUNX1-EVI-1 differentially program the chromatin landscape in t(3;21) and t(8;21) AML but share global C/EBP-alpha dysfunction (RNA-Seq) 4.82
MiR-CLIP capture of a miRNA targetome uncovers a lincRNA H19-miR-106a interaction [III] 4.81
RNAseq of Extracellular vesicle RNAs and cellular RNAs from HPASMCs with or without TGF-b1 or BMP4 treatment 4.73
A code of mono-phosphorylation modulates the function of RB. 4.72
SRSF1 role in cellular gene expression and splicing 4.67
A novel P300 inhibitor reverses DUX4-mediated global histone H3 hyperacetylation, target gene expression and cell death 4.65
Probing the Global Cellular Responses to Lipotoxicity Caused by Saturated Fatty Acids 4.56
Effects of Inhibition of CDK8/19 Mediator Kinase by Senexin B in HCT116 cells treated with or without TNF-alpha 4.56
Decrease in EZH2 histone methyltransferase mediates the effects of fluid shear stress (FSS) in endothelial cells 4.53
Cell cycle dynamics of human pluripotent stem cells primed for differentiation 4.51
Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion 4.51
Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells 4.47
Genome-wide profile of cJun and p27 and gene expression profile in breast cancer cells 4.45
Gene expression profile in breast cancer cells 4.45
Profiles of Long Noncoding RNAs in Human Naive and Memory T Cells 4.43
Characterisation of HIF-dependent alternative isoforms in pancreatic cancer 4.43
Human Sandhoff Disease Cerebral Organoids Exhibit Enlarged Size, Increased Cellular Proliferation, and Impaired Differentiation 4.38
Differential Protein Occupancy Profiling of the mRNA Transcriptome 4.35
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation [RNA-Seq SS] 4.34
Tunable protein synthesis by transcript isoforms in human cells (Transcript Isoforms in Polysomes sequencing: TrIP-seq) 4.33
Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response 4.33
Heterozygous mutations in SMARCA2 lead to impaired neurogenesis due to global retargeting of SMARCA4 4.33
RNA-Guided Human Gene Activation by Cas9/CRISPR-Based Engineered Transcription Factors 4.32
Antibiotics induce polarization of pleural macrophages to M2-like phenotype in patients with tuberculous pleuritis 4.32
ChIPseq and RNAseq analysis of T47D cells with/without silencing TRPS1/CHD4 4.27
HEXIM1 is induced by DHODH inhibition to suppress melanoma [Gro-Seq] 4.26
HEXIM1 is induced by DHODH inhibition to suppress melanoma 4.26
Human cells contain natural double-stranded RNAs with potential regulatory capacity 4.26
The impact of stanniocalcin 1 on the transcriptome of human cord blood stem/progenitors 4.2
RNA sequencing of CACO-2 cells incubated with bifidobacteria grown on human milk oligosaccharides. 4.15
Mutant KRAS/BRAF Reprograms the Enhancer Landscape via GATA1 to Drive Chemoresistance 4.11
Global transcriptional changes in the JJN3 myeloma cell line that occur as a result of treatment with 2 pyrrolobenzodiazepine (PBD) monomers 4.1
Epidermal growth factor activates β-catenin via integrin-linked kinase to control proliferation of mesenchymal stromal cells. 4.09
The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition 4.07
SNHG15 is a bifunctional MYC-regulated noncoding locus encoding a lncRNA that promotes cell proliferation, invasion and drug resistance in colorectal cancer by interacting with AIF 4.07
CHD7 is Suppressed in the Perinecrotic/Ischemic Microenvironment and is a Novel Regulator of Angiogenesis 4.03
mRNA-Seq profiling of human developing kidney 4.03
Comparative whole-transcriptomic analysis between normal and AKAP-Lbc-depleted human embryonic stem cells 3.98
Patient-derived organoids (PDOs) model treatment response of metastatic gastrointestinal cancers. 3.97
Identification of genes regulated by Long noncoding RNA H19 in hepatic cells 3.95
H19 regulates hepatic glucose production by epigenetic modification of Hnf4* 3.95
TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding 3.95
Domain-focused CRISPR-screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells 3.8
RNA-Seq analysis of 4N and 2N RPE1 cells following polyploid induction via cytokinesis failure by siRNA knockdown of Anillin [tpo8] 3.78
The Genetic Landscape of Diamond-Blackfan Anemia 3.77
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation 3.74
Transcriptomics-based drug repurposing approach identifies novel drugs against sorafenib-resistant hepatocellular carcinoma 3.73
Hepatitis C virus functionally sequesters miR-122 3.67
Hepatitis C virus functionally sequesters miR-122 [RNA-Seq] 3.67
Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma [RNA-Seq] 3.67
Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma 3.67
Toxicogenomics of the flame retardant tris (2-butoxyethyl) phosphate in HepG2 cells using RNA-seq. 3.66
DDX54 regulates transcriptome dynamics during DNA damage response [4SU-seq] 3.62
High throughput analysis of three human adipose cell lines PAZ6, SGBS and SW872 3.57
A quantitative chemotherapy genetic interaction map identifies new factors associated with PARP inhibitor resistance 3.57
RNA-Seq analysis of Head and Neck Squamous cell carcinoma cell-lines 3.56
miRNAs affected by antagomiR-17 treatment 3.56
Transcriptomic analysis of acute mitochondrial pyruvate carrier inhibition using UK5099 in ABL prostate cancer cells 3.56
miR-93 Targets in Human Endothelial Cells 3.45
Characterization of Type I Interferon pathway during Hepatic Differentiation of Human Pluripotent Stem Cells and hepatitis C virus infection 3.41
Small molecule inhibition of ERK dimerization prevents tumorigenesis by Ras-ERK pathway oncogenes 3.37
Transcriptomic analysis of LSD1 3.36
RNA transcriptome sequencing analysis of SGC-7901 cells transfected with tcons_00001221 shRNA or control shRNA 3.32
Complement protein C1q modulates macrophage molecular signaling and inflammatory responses during ingestion of atherogenic lipoproteins 3.31
NF-κB p65 dimerization and DNA-binding is important for inflammatory gene expression 3.28
The dynamic landscape of coding and non-coding RNAs in the innate immune response to microbial pathogens 3.22
APT1 regulates the asymmetric partitioning of Notch and Wnt signaling during cell division 3.21
RNA Sequencing of Human iPS derived Cardiomyocytes 3.17
Acetyl-CoA carboxylase inhibition regulates microtubule dynamics and intracellular transport in cystic fibrosis epithelial cells 3.15
CDK4/6 inhibitors target SMARCA4-determined cyclin D1 deficiency in hypercalcemic small cell carcinoma of the ovary (I) 3.12
Transcriptome-wide profiling of poly(A)-tail length, translation efficiency and mRNA stability using TED-seq, mRNA-seq, Ribo-seq and PRO-seq in ER stress conditions 3.08
Gene expression from AsPC-1 cells treated with PTC596 and DMSO 3.05
Highly-motile versus unsorted MDA-MB-231 breast cancer cells 3.02
FBP2 inhibits sarcoma progression by restraining mitochondrial biogenesis 2.98
Transcriptomic Analysis Of circRNAs/miRNAs/mRNAs upon Middle East Respiratory Syndrome Coronavirus (MERS-CoV) infection 2.98
MARS Seq data from human cortical organoids 2.94
Next Generation Sequencing (RNA-Sequencing) for the analysis of RUNX3 targets in H460, H460-ERT2-RUNX3 WT and H460-ERT2-RUNX3 MT(K94/171R mutation) 2.9
Coordinate regulation of alternative pre-mRNA splicing events by the human RNA chaperone proteins hnRNPA1 and DDX5 2.84
Global transcriptome analysis of WT versus HEB-/- hESCs 2.82
BET bromodomain inhibitor iBET151 impedes human ILC2 activation and prevents experimental allergic lung inflammation 2.82
PRMT5 Interacts with the BCL6 Oncoprotein and is Required for Germinal Center Formation and Lymphoma Cell Survival 2.81
Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [bulk RNA-Seq] 2.71
Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation 2.71
Genome-wide RNA deep sequencing of CAL-101 or AKTi primed human T cells in comparison to traditionally expanded T cells 2.7
The Hippo pathway kinase LATS1 scaffolds Beclin1 in autophagy regulation in hepatocellular carcinoma 2.69
m6A-dependent regulation of messenger RNA stability 2.63
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 2] 2.6
A cytoplasmic COMPASS is necessary for cell survival and triple-negative breast cancer pathogenesis by regulating metabolism 2.59
The transcription and translation landscapes during human cytomegalovirus infection reveal novel host-pathogen interactions 2.59
Role of BET proteins in YAP/TAZ-dependent transcription [RNA-seq 2] 2.57
Transcriptome analysis upon C6orf203 silencing 2.56
X-Ray induced DNA-Hydroxymethylation changes 2.5
Interaction between mitoNEET and NAF-1 in cancer cells 2.46
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation (RNA-Seq) 2.44
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation 2.44
Illumina sequencing of vaginal epithelial cells from women using depot medroxyprogesterone acetate or non-hormonal contraception 2.43
Critical role for Lymphocytes in Producing FLT3LG in Tumors and Driving Checkpoint Therapy-Receptive Immune Microenvironments 2.41
Comparison of small cell lung cancer PDX model FHSC04 for response to LSD1 inhibitor RG6016/ORY1001 2.36
Dual RNA-seq – High-resolution comparative Dual RNA-seq time-course 2.36
Dual RNA-seq of diverse human, mouse and pig cell-types infected with various Salmonella strains 2.36
HEK293 TFAM Knockout Expression Study 2.35
Serotonin-induced hyperactivity in SSRI-resistant major depressive disorder patient-derived neurons 2.34
Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation 2.32
An Argonaute phosphorylation cycle promotes microRNA-mediated silencing [whole transcriptome RNA-seq] 2.32
RNA sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining 2.31
Gene expression profiles of BxPC-3, MiaPaCa-2 and PANC-1 cell lines treated with DMSO and THZ1 respectively 2.26
RNA-seq of HEK293T cells overexpressing TET1-FL or TET1-ALT 2.19
A practical evaluation of alignment algorithms for RNA variant calling analysis 2.14
YTHDF1 Amplifies Wnt/β-Catenin Signaling to Promote Intestinal Stemness 2.07
ILF2 Regulates RNA Splicing of DNA Damage Response Genes to Confer Poor Prognosis in 1q21-Amplified Multiple Myeloma 2.07
CD90 Identifies Adventitial Mesenchymal Progenitor Cells in Adult Humans 2.03
Activity-dependent transcriptional changes in human neurons 2.01
RNA-seq of CD33 KO and control HSPCs 2.01
RNAseq of human monocyte cell line (U937-Cas9) WT or IRF2KO 1.95
TFAP2C signalling in human fibroblasts 1.93
Glioma Stem Cell Specific Super Enhancer Drives Polyunsaturated Fatty Acid Synthesis to Support EGFR Signaling 1.92
Oncogenic Antisense LncRNA P14AS Regulates Expression of ANRIL through AUF1 Binding 1.89
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules 1.85
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [gene expression] 1.85
Differential responses of human fetal brain neural stem cells to Zika virus infection 1.82
Transcriptome-analysis of patient-derived normal and ulcerative colitis intestinal epithelial organoids 1.81
Non-coding and coding transcriptional profiles are significantly altered in pediatric Retinoblastoma tumors 1.81
The Chromatin-Looping Factor ZNF143 Engages at Looping Promoters to Favor the Estrogen Response in Breast Cancer (RNA-seq) 1.78
The Chromatin-Looping Factor ZNF143 Engages at Looping Promoters to Favor the Estrogen Response in Breast Cancer 1.78
Functional Significance of U2AF1 S34F Mutation in Lung Adenocarcinomas 1.76
Arrayed molecular barcoding identifies TNFSF13 as a positive regulator of acute myeloid leukemia-initiating cells 1.75
FMR1 reactivating treatments in Fragile X iPSC-derived neural progenitors in-vitro and in-vivo 1.73
UPF1/SMG7-dependent MicroRNA-mediated Gene Regulation 1.73
Dissecting neural differentiation regulatory networks through epigenetic footprinting 1.72
Induction of human regulatory innate lymphoid cells from group 2 innate lymphoid cells by retinoic acid 1.61
The impact of oil spill to lung health – insights from an RNA-seq study of human airway epithelial cells 1.6
Long non-coding RNA TYKRIL controls pericyte function and survival in the cardiovascular and central nervous system through regulation of p53 activity and PDGFRß expression 1.59
Metabolism as an early predictor of DPSCs aging 1.57
RNA Expression Profile of Calcified Bicuspid, Tricuspid and Normal Human Aortic Valves by RNA Sequencing [BAV] 1.57
Inhibition of H3K4 demethylation induces autophagy in cancer cell lines 1.55
Radiation enhances melanoma response to immunotherapeutic and synergizes with benzodiazepines to promote improved anti-tumor activity 1.54
Identifying markers predicting successful graft outcome for clinical translation of hESC-based cell therapy for Parkinson’s disease 1.49
Transcriptome analysis in a radiosensitive and a radioresistant cell line after ionizing radiation 1.46
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies 1.42
RNA-Seq gene profiling comparison from human cDC subsets and pre-cDC subsets 1.34
Human Cord Blood Sorted Live Cell Erythroblasts RNA-Seq 1.29
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 1.23
miR-126 Orchestrates an Oncogenic Program in B-Cell Precursor Acute Lymphoblastic Leukemia 1.19
Loss of Function Mutations in ETS2 Repressor Factor (ERF) Reveal a Balance Between Positive and Negative ETS Factors Controlling Prostate Oncogenesis [22PC RNA-seq] 1.18
RNA-Seq analysis of HIF-2a-responsive genes in clear-cell renal cell carcinoma 1.15
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability [RNA-seq] 1.11
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability 1.11
Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution 1.08
Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B-cell Responses to Influenza Hemagglutinin 1.07
Transcriptome profiling of A2M treated A549 Cell Line Samples 1.06
An evolutionary recent IFN-IL-6-CEBP axis is linked to monocyte expansion and tuberculosis severity in humans. 1.06
Iron response of HepG2 cells 1.04
Gene expression changes due to PARP knockdown in human cells 1.02
Enhancer activation during EGF response 0.96
Transposon-based construction of strand-specific RNA-seq libraries 0.96
RNA-sequencing of Wnt-dependent and Wnt-independent of Glioblastoma stem cell cultures 0.95
Single-cell survey of human lymphatics unveils marked endothelial cell heterogeneity and mechanisms of homing for neutrophils 0.95
Antiviral and anti-inflammatory properties of novel anti-HIV candidate ABX464 promotes specifics RNA splicing while preserving cellular RNA integrity. 0.93
CD8+ T cells regulate tumor ferroptosis during cancer immunotherapy 0.93
Truncation of LOC100288798 (SLC38A4-AS) lncRNA in human haploid KBM7 cell line 0.93
MAIT cell RNA sequencing 0.9
Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses 0.9
A Non-Canonical Nuclear Activity Triggered by Small RNAs and Argonaute Proteins in Human Cells 0.9
An intramolecular salt bridge linking TDP43’s RNA recognition motifs dictates RNA binding, protein stability and TDP43-dependent neurodegeneration 0.89
In vivo generation of post-infarct human cardiac muscle by laminin-promoted cardiovascular progenitors [LN-521 or LN-521+LN-221] 0.88
Antioxidant metabolism in activated CD8+ T cells regulates stem-like human memory T cell formation and anti-tumor immunity 0.86
Widespread regulated alternative splicing of single codons accelerates proteome evolution 0.85
Epigenome Editing by CRISPR/Cas9 Repressors for Silencing of Distal Regulatory Elements 0.82
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells [Toxin] 0.82
Human bone marrow resident natural killer cells have a unique transcriptional profile and resemble resident memory CD8+ T cells 0.81
Small-molecule targeting of brachyury transcription factor addiction in chordoma [rnaseq_compound] 0.79
LHX9 rescues KRAS suppression through transcriptional regulation of YAP1 [RNA-Seq] 0.71
LHX9 rescues KRAS suppression through transcriptional regulation of YAP1 0.71
Tri-mannose grafting of chitosan nanocarriers remodels the macrophage response to bacterial infection 0.71
O-glcnAc reprograms cellular energetics 0.71
Trisomy of a ‘Down syndrome critical region’ globally amplifies transcription via HMGN1 overexpression [SLAM-Seq] 0.69
Transcriptomic Alterations in Lung Adenocarcinoma Unveil New Mechanisms Targeted by the TBX2 Subfamily of Tumor Suppressor Genes 0.67
Rnase L reprograms translation by widespread mRNA turnover escaped by antiviral mRNAs 0.62
Functional and genomic characterization of a xenograft model system for the study of metastasis in triple-negative breast cancer. 0.62
Metastasis in triple-negative breast cancer 0.62
Extracellular matrix (ECM) stiffness and collagen-1 (col-1) responsive genes in 3D cultured mammary epithelial cells 0.61
Energy Metabolism during Anchorage-Independence 0.6
IL-10 dysregulation in acute mountain sickness revealed by transcriptome analysis 0.54
Kidney compartment specific eQTL studies highlight causal genes and pathways for renal disease development 0.51
Pro-angiogenic Ginsenoside F1 and Rh1 Inhibit Vascular Leakage by Modulating NR4A1 0.5
Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity 0.49
transcriptome studies of BRD4 inhibitor BDF-1253 on renal clear carcinoma 786-O cells 0.49
β-Caryophyllene Enhances the Transcriptional Upregulation of SREBP-dependent Lipid Biosynthesis in Breast Cancer Cells 0.49
Methylation DNA mediated KLF4 binding activity in glioblastoma cells 0.41
Solid phase chemistry to covalently and reversibly capture thiolated RNA 0.39
Hyperactive mTOR and MNK1 phosphorylation of eIF4E confer tamoxifen resistance and estrogen independence through selective mRNA translation reprogramming 0.39
Mesothelioma xenografts in nude mice: PBS treated versus pirfenidone treated 0.38
Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: Comparison of gene expression profiling approaches [RNA-Seq] 0.38
Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: Comparison of gene expression profiling approaches 0.38
Identification of a LIF-responsive replication-competent human β cell 0.37
Direct in vivo evidence for B-cell receptor and NF-KB activation in mantle cell lymphoma: role of the lymph node microenvironment and activating mutations. [RNA-Seq] 0.37
Direct in vivo evidence for B-cell receptor and NF-KB activation in mantle cell lymphoma: role of the lymph node microenvironment and activating mutations. 0.37
Functional TRIM24 degraders via conjugation of ineffectual bromodomain and VHL ligands [RNA-seq] 0.36
K562 polyA RNA-Seq 0.35
Trans-differentiation of human adult peripheral blood T cells into neurons 0.33
Characterisation of the EZH2 regulated transcriptome in de novo transformed cells (RNA-Seq) 0.32
Precise Gene Editing Preserves Hematopoietic Stem Cell Function Following Transient p53-Mediate DNA Damage Response [bulk RNA-seq] 0.28
Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes 0.25
RNA-seq of HUVEC ± shRNA knockdown of SENCR 0.24
RNA sequencing from FOXM1 knockout HEK293T cells reconstituted with FOXM1 isoforms a, b and c. 0.24
Myc activation coordinates gene transcription and protein translation responses 0.23
Human pulmonary artery endothelial cells (hPAECs) with downregulated BMPR2 signaling demonstrate a unique gene expression signature after exposure to overexpression of AdAlox5 0.23
Gene expression profile of differentially recognized Mtb-epitopes as a function of disease history 0.22
Muscleblind-like 1 suppresses breast cancer metastatic colonization and stabilizes metastasis suppressor transcripts 0.2
MBNL1-dependent modulation of gene expression in MDA-MB-231 breast cancer cells 0.2
Transcriptome analysis of CD8+ T cells from healthy controls and patients wth CD46 deficiency 0.18
Analysis of transcriptomes of healthy donor and CD46 deficient CD8 T cells 0.18
Determining mRNA half-lives on a transcriptome-wide scale 0.18
Transcriptome-profiling (RNA-seq) and Ribosome-profiling (Ribo-seq) in proliferation, quiescence, senescence and transformed states. 0.18
Effects of transcription factor CEBPA knockdown on vitamin D target gene regulation in THP-1 cells 0.12
The pioneer factor CEBPA modulates vitamin D signaling 0.12
A toxicogenomics approach to screen chlorinated flame retardants tris(2-chloroethyl) phosphate and tris(2-chloroisopropyl) phosphate for potential health effects 0.1
Genome-wide hsa-miR-503, hsa-miR-103, and hsa-miR-494 target profiles 0.06
hsa-miR-503, hsa-miR-103, and hsa-miR-494 genome wide target profiles [RNA-Seq and RIP-Seq] 0.06
Genome-wide analysis of the Integrator complex (HTS) 0.05
Genome-wide analysis of the Integrator complex 0.05
Genome-wide search for differentially expressed RNAs responsible for the effects induced by Ebola virus replication and transcription 0.05
RNA-seq expression data from FL-HSPCs after HOXA7 knockdown 0.04
ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing 0.03
ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing (RNA-seq) 0.03
RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms, and GTPase binding in bipolar disorder 0.01
Targeting Spt5-Pol II small-molecule inhibitors uncouple distinct activities and reveal additional regulatory roles 0.0


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