Gene Query: CCDC82

Dataset Description Geneva Score
CD74 role in transcription regulation 26.77
CD74 role in transcription regulation [RNA-seq] 26.77
An Argonaute phosphorylation cycle promotes microRNA-mediated silencing [polyA RNA-seq] 23.19
The BCL6 RD2 domain governs commitment of activated B-cells to form germinal centers 22.72
Gene expression profiles in response to proanthocyanidins in pancreatic cancer cells 21.54
ILF2 Regulates RNA Splicing of DNA Damage Response Genes to Confer Poor Prognosis in 1q21-Amplified Multiple Myeloma 21.08
A novel P300 inhibitor reverses DUX4-mediated global histone H3 hyperacetylation, target gene expression and cell death 14.35
RNASEQ Analysis of sh-TRC and sh-MIR100HG in the triplex negative breast cancer 13.93
A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters 13.75
Gene expression analysis of CD4+ and CD4- ILC1 subsets by RNAseq 12.51
SMN2 splicing modifiers improve motor function and longevity in mice with spinal muscular atrophy 12.3
Specific modulation of HIV RNA splicing and upregulation of anti-inflammatory miR-124 by the new drug candidate ABX464 11.84
Limiting cholesterol biosynthetic flux engages type I IFN signaling in a STING-dependent manner 11.84
Gene expression profiling study by RNA-seq for identifying genes associated with epithelial-mesenchymal transition and acquired resistance to ALK inhibitors 11.51
Epithelial-mesenchymal transition and acquired resistance to ALK inhibitors 11.51
Neurofibroma 11.35
Differential expression in wild-type and mutant neurofibroma and MPNST cell lines 11.35
Global Mapping of Human RNA-RNA Interactions 11.29
ZRANB2 and SYF2 mediated splicing programs converging on ECT2 are involved in breast cancer cell resistance to doxorubicin 11.22
Quantitative comparison between cellular mRNAs and exosomal mRNAs in human iPSC-derived motor neurons 11.19
A Brain Penetrant Mutant IDH1 Inhibitor Provides In Vivo Survival Benefit 11.11
Major hnRNP proteins act as general TDP-43 functional modifiers both in Drosophila and human neuronal cells. 10.75
Gene expression analysis of ER+ and ER- breast cancer cell lines with acquired resistance to palbociclib 10.5
Transcriptomic analysis of LSD1 10.46
RNA sequencing of BT142 and TS603 cell lines 10.08
Metabolic Reprogramming Associated with Aggressiveness Occurs in the G-CIMP-High Molecular Subtypes of IDH1mut Lower Grade Gliomas 10.08
Bromodomain inhibition of the transcriptional coactivators CBP/EP300 as a therapeutic strategy to target the IRF4 network in multiple myeloma 10.03
Bromodomain inhibition of the transcriptional coactivators CBP/EP300 as a therapeutic strategy to target the IRF4 network in multiple myeloma (RNA-Seq) 10.03
WRN knockout effects upon gene expression in SW48 and OVK18 9.85
The Human Testis Cell Atlas via Single-cell RNA-seq 9.28
MeRIP sequencing reveals angiogenic properties of vascular endothelial cells 9.16
RNA transcriptome sequencing analysis of SGC-7901 cells transfected with ENST00000431060 shRNA or control shRNA 9.15
Characterization of sperm lncRNA and its differently expression in the sperm of asthenozoospermic patients 9.11
Expression by CD133+ cells isolated from the adult human exocrine pancreas 9.03
SMN deficiency in spinal muscular atrophy causes widespread intron retention and DNA damage 8.97
RNA-seq analysis of human cardiosphere cells with different tubule supportive potential 8.85
Next generation sequencing analysis of transcriptomes at different timepoints after chlorprothixene treatment in NB4 and Kasumi-1 cells 8.8
Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration 8.71
UV-Irradiation Induces a Noncoding RNA that Functionally Opposes the Protein Encoded by the Same Gene 8.6
Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines 8.48
Neonatal and adult human testis defined at the single-cell level 8.3
A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks 8.13
Krüppel-like Transcription Factor-10 (KLF10) Provides a Negative Feedback Mechanism to Suppress TGFβ-Induced Epithelial-to-Mesenchymal Transition 8.03
Krüppel-like Transcription Factor-10 (KLF10) Provides a Negative Feedback Mechanism to Suppress TGFβ-Induced Epithelial-to-Mesenchymal Transition [RNA-Seq] 8.03
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells [UNSWCD] 7.99
RNA-Seq Analysis of Anacardic Acid Treated MCF7 and MDA-MB-231 Breast Cancer Cell Lines 7.87
Gene expression profiling in two dimensional and extracellular matrix based three-dimensional cultures of lung and breast cancer cells 7.8
Two dimensional and extracellular matrix based three-dimensional cultures of lung and breast cancer cells 7.8
Transcriptomic hallmarks of tumor plasticity and stromal interactions in brain metastasis [MultiDisease] 7.64
RNA-sequencing analysis of CD4 T cells following ipilimumab therapy 7.6
RNA-Seq following PCR-based sorting reveals rare cell transcriptional signatures 7.52
RNA-seq in acute myeloid leukemia (AML) cells with and without knockdown of METTL14 7.3
TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs. 7.26
Uridylation-mediated RNA quality control pathway in mammalian cytoplasm [RNA-Seq] 7.26
Investigation into human Tra2 protein-dependent splicing in MDA-MB-231 cells using iCLIP and RNA-seq 7.22
Global transcript structure resolution of high gene density genomes through multi-platform data integration: Illumina RNA-Seq 7.16
Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases 7.15
The Developmental Heterogeneity of Human Natural Killer Cells Defined by Single-cell Transcriptome 7.12
Synaptic dysfunction in human neurons with Autism associated deletions in PTCHD1-AS 7.08
Gene expression changes after depletion of Cyclin F and atypical E2Fs in HeLa cells. 6.98
MYT1 attenuates neuroblastoma cell differentiation by inhibiting retinoic acid signaling pathway 6.83
Functional interactions between Mi-2β and AP1 complexes control response and recovery from barrier disruption 6.82
Modulation of Indoleamine 2, 3-dioxygenase 1 Expression by Activated Human T cells in Breast Cancer Cells is Controlled by DNA Promoter Methylation 6.81
LMO1 Synergizes with MYCN to Promotes Neuroblastoma Initiation and Metastasis 6.79
Trisomy of a ‘Down syndrome critical region’ globally amplifies transcription via HMGN1 overexpression 6.76
RNA-seq analysis of FET cells treated with RSPO1 or TGFβ1 6.73
RNA-seq of synchronized S phase or G2 phase cells treated with an ATR inhibitor 6.68
Cooperation between TLX1 and the NUP214-ABL1/STAT5 signaling in T-cell acute lymphoblastic leukemia 6.62
Waterpipe Smoking Induces Epigenetic Changes in the Small Airway Epithelium 6.57
Waterpipe Smoking Induces Epigenetic Changes in the Small Airway Epithelium [RNA-Seq] 6.57
Gene expression profiling in lung and breast cancer cells treated by Bloom-specific siRNAs 6.55
Transcriptomic hallmarks of tumor plasticity and stromal interactions in brain metastasis 6.54
Gene Expression Analysis of Melanoma Cells Treated with 6-Thio-dG In Vitro 6.51
Coordination of neuron production in mouse and human cerebral cortex by the homolog of Drosophila Mastermind protein 6.48
Evaluation of RNA amplification and RNA-Seq library preparation protocols for spermatozoa RNA profiling 6.44
Stably-paused genes revealed through inhibition of transcription initiation by the TFIIH inhibitor Triptolide 6.43
RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-κB and p53 transcription factors in cells exposed to high doses of ionizing radiation [RNA-Seq] 6.43
RNA sequencing analysis of selumetinib-resistant CRC cells lines 6.36
MYCL and EP400 are required for Max and MCPyV mediated gene activation 6.3
m6A-seq data analysis of control and PCIF1 knockdown transcriptome 6.21
Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage 6.18
Major roles of cyclobutane pyrimidine dimers, nucleotide excision repair and ATR in the alternative splicing response to UV irradiation 6.12
Integrated analysis of MLL-AF9 AML patients and model leukemias highlights RET and other novel therapeutic targets (RNA-seq B-ALL) 6.11
Genome-wide analysis of ferroptosis related genes in liver cancer cells. 6.1
Hypoxic transcriptome of SQ20B human head and neck cancer cells 6.08
Single cell analysis of HSV-1 infection reveals anti-viral and developmental programs are activated in distinct sub-populations with opposite outcomes 6.03
Next Generation Sequencing Facilitates Quantitative Analysis of Retinoblastoma Transcriptomes 6.0
Integrin signaling regulates YAP/TAZ to control skin homeostasis 5.97
Human bone marrow resident natural killer cells have a unique transcriptional profile and resemble resident memory CD8+ T cells 5.97
Compensatory Csf2-driven macrophage activation blunts long-term efficacy of therapeutic Csf1r inhibition in breast-to-brain metastasis 5.95
ELF4 is a target of miR-124 and promotes neuroblastoma proliferation and undifferentiated state 5.88
APT1 regulates the asymmetric partitioning of Notch and Wnt signaling during cell division 5.77
Transcriptomics analysis of gene expression in multiple human and mouse cells and tissues 5.77
Rational targeting of RNA structure in SMN2 transcripts reverses Spinal Muscular Atrophy molecular phenotypes 5.74
The evolution of N6-methyladenosine in primates 5.73
DUX4 recruits p300/CBP through its C-terminus and induces global H3K27 acetylation changes 5.71
Disruption of the exocyst induces podocyte loss and dysfunction 5.66
RNA-seq analysis of control and CDK12-depleted ovarian cancer cells 5.65
Transcriptional profiling of MDA-MB-231 and its ρ0 cells (lacking mtDNA) after 48h arginine depletion by arginine deiminase (ADI). 5.64
Gene expression profile in breast cancer cell lines using RNA sequencing 5.58
MARCKS and lnc-MARCKS act as inflammation regulators 5.55
Generation and persistence of human tissue-resident memory T cells in lung transplantation 5.54
Systematic analysis of gene expression profiles controlled by hnRNP Q and hnRNP R, two closely related human heterogeneous nuclear ribonucleoproteins. 5.5
Fbxo32 mediated gene expression program underlies EMT and metastasis 5.49
An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis 5.47
mRNA expression profile of Lymphocytes 5.46
Identification of genes regulated by Long noncoding RNA H19 in hepatic cells 5.44
H19 regulates hepatic glucose production by epigenetic modification of Hnf4* 5.44
Characterizing the contrasting roles of JMJD3 and UTX histone demethylases in T cell acute lymphoblastic leukemia [short_hairpins_RNA-seq] 5.43
CROP-Seq in Primary Human T Cells 5.43
Transcriptome analysis of ECFCs treated with GSK-343 and Panobinostat 5.41
LncRNA expression profiling of ischemic stroke patients 5.4
Parkinson’s Disease Genetic Risk in a Midbrain Neuronal Cell Line 5.39
Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference [RNA-Seq] 5.37
Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference 5.37
Transcriptome Analysis of PBMCs in peripheral blood of patients with hepatocellular carcinoma 5.37
RNAseq data from SCCOHT1 and OVCAR8 ovarian cancer cells treated with BET inhibitors 5.36
Transcriptome analysis of genetically matched human induced pluripotent stem cells disomic or trisomic for chromosome 21 5.33
Click chemistry enables comprehensive preclinical evaluation of targeted epigenetic therapies [RNA-seq] 5.31
Click chemistry enables comprehensive preclinical evaluation of targeted epigenetic therapies 5.31
Global Promotion of Alternative Internal Exon Usage by mRNA 3' End Formation Factors 5.28
Global Regulation of Alternative Internal Exon Usage by mRNA 3' End Formation Factors [RNA-Seq] 5.28
Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed 5.28
Transcriptional profile of human STAT1-/- fibroblasts expressing LY6E or empty control vector 5.25
A novel lncRNA lncRNA-AF339830 promotes colorectal carcinogenesis and glucose metabolism by stabilizing and specifying the transcription modification pattern of c-Myc [RNA-Seq] 5.25
A novel lncRNA lncRNA-AF339830 promotes colorectal carcinogenesis and glucose metabolism by stabilizing and specifying the transcription modification pattern of c-Myc 5.25
Transcriptional changes in pancreatic cancer cells associated with gemcitabine resistance 5.25
Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells 5.21
ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion [12Z_RNA-seq] 5.2
Exploring transcriptomic landscapes in red cell populations, in their extracellular vesicles and on single cell level 5.2
Human RELA haploinsufficiency results in autosomal dominant chronic mucocutaneous ulceration: the transcriptional profile of RelA haploinsufficient patients 5.18
DART-seq: an antibody-free method for global m6A detection 5.16
Analysis of Combined Transcriptomes Identifies Gene Modules Differentially Responding to Pathogenic Stimulation in Vascular Smooth Muscle and Endothelial Cells 5.15
Studying iPSCs from a hibernating mammal reveals molecular mechanisms of cold resistance in neural tissues 5.15
The myelin protein PMP2 is regulated by SOX10 and drives melanoma cell invasion 5.14
ATF4 inhibition by p62 represses stromal metabolic reprogramming and tumorigenesis II 5.12
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons 5.09
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons [RNA-Seq] 5.09
Large-scale epigenetic reprogramming is punctuated late during the evolution of pancreatic cancer progression [RNA-Seq] 5.07
Retinoic Acid Induced Transcriptional Repressor HIC1 is Required for Suppressive Function of Human Induced Regulatory T cells [RNA-Seq 1] 5.05
Transcriptional profiling of LS1034 cells treated with tepoxalin 5.03
Identification of alternatively spliced transcripts in brain metastatic derivatives of MDA-MB-231 breast cancer cells in response to RBM47 expression 4.99
The identification of RBM47 binding sites and RBM47-dependent alternative splicing events in brain metastatic breast cancer cells 4.99
Integrating single-cell transcriptomic data across different conditions, technologies, and species 4.97
Decoding breast cancer tissue-stroma interactions using species-specific sequencing 4.96
Histone deacetylase inhibition enhances antimicrobial peptide but not inflammatory cytokine expression upon bacterial challenge 4.94
The RNA binding protein IGF2BP3 promotes hematopoietic progenitor cell proliferation by targeting leukemogenic pathways 4.88
Tpl-2 and MEK small molecule inhibitors 4.88
Tpl-2 small molecule project 4.88
DHX36 resolves G-rich structures in mRNA untranslated region to allow their translation [ChrRNA-seq] 4.88
A NIK-SIX signaling axis controls inflammation by targeted silencing of noncanonical NF-κB 4.86
RNA sequencing (RNA-SEQ) of Human endothelial cells (HUVEC) in LFS, sFRP2OE, and WT conditioned media 4.85
Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap 4.82
Gene expression in GBM with Cav3.2 inhibition 4.74
Recapitulating and Deciphering Tumor-stroma Microenvironment by Using a “LEGO” like 3D printed microfluidic device 4.73
Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify 4.7
Identification of atheroprone shear stress responsive regulatory elements in endothelial cells 4.67
Transcriptomic profiling of normal human cardiac fibroblast treated with halofuginone 4.66
A single-cell atlas of the human cortex reveals drivers of transcriptional changes in Alzheimer’s disease in specific cell subpopulations 4.61
Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics 4.59
hMTR4 plays a central role in creating balanced nuclear RNA pools for degradation and export 4.58
RNA-seq of MDA-MB-231 cells with TET1 knockout 4.57
ARID1A regulates condensin II distribution and chromosomal partition 4.55
ARID1A regulates condensin II distribution and chromosomal partition [RNA-seq] 4.55
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors 4.48
Stimulation of isolated plasmacytoid dendritic cells (pDCs) with TLR9 agonist CpG C (CpG) and TLR7 agonist imiquimod (IMQ) 4.48
Transcriptomic analysis of T84 colon carcinoma cell line treated with trametinib, JQ1 or their combination 4.46
Differential expression of human parthenogenic stem cells, neural stem cells and DA progenitors. 4.43
Differential expression of genes in HCMV-infected fibroblasts regulated by the purinergic receptor P2Y2. 4.41
U2AF1 mutations alter splice site recognition in hematological malignancies 4.31
single cell RNA-seq from GM12878 (ENCSR673UIY) 4.31
Differentially Expressed Genes upon Knockdown of ZRANB1 or EZH2 in LM2 Cells 4.31
Progressive motor neuron pathology and the role of astrocytes in a human stem cell model of VCP-related ALS 4.2
Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling (mRNA) 4.2
Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling 4.2
RNA-seq, ChIP-seq and single cell RNA-seq of human skin Langerhans cells 4.18
Effect of PRDM11 depletion in U2932 cells 4.17
RNA-seq analysis and shRNA screen of breast cancer 4.17
RNA-seq analysis of breast cancer 4.17
Cleavage Factor Im as a key regulator of 3’ UTR length 4.17
Modulation of SF3B1 causes global intron retention and downregulation of the B-cell receptor pathway in chronic lymphocytic leukemia 4.16
Single cell RNA sequencing reveals microglia-like cells in cerebrospinal fluid  during virologically suppressed HIV 4.16
TGFβ-induced fibroblast activation requires persistent and targeted HDAC-mediated gene repression 4.13
Plasma cell mitochondrial pyruvate import controls the duration of humoral immunity. 4.11
Capturing the biology of mild versus severe disease in a pluripotent stem cell-based model of Familial Dysautonomia 4.08
Dissection of estrogen receptor alpha signaling pathways in osteoblasts using RNA-sequencing 4.04
The influence of PPFIA1 silencing to gene expression in breast carcinoma cell line and head and neck squamous cell carcinoma cell lines by RNA-sequencing in three dimensional collagen I 4.02
Oncogenic MYC induces a dependency on the spliceosome in human cancer 4.0
Transcriptomic analysis of differential expressed genes of human tonsillar epithelial cells UT-SCC-60B in response to EV71 infection 3.99
Transcriptional profile of human STAT1-/- fibroblasts expressing IFI6 or empty control vector 3.98
Transcriptome-wide identification of splicing defects upon XAB2 knockdown 3.91
Gene expression analysis of human CD8+ T cells treated with a DOT1L inhibitor 3.89
PolyA+ RNA-seq in ALL-SIL upon TLX1 knockdown 3.86
The LINC01138 Drives Malignancies via Activating Arginine Methyltransferase 5 in Hepatocellular Carcinoma 3.86
Elucidating the microRNA-203 specific biological processes in glioblastoma cells from comprehensive high-throughput RNA-sequencing transcriptome profiling 3.84
H3B-8800, a novel oral splicing modulator, induces lethality in spliceosome mutant cancers [Nalm-6] 3.83
Human cell line and subcutaneous tumor 3.83
Fisetin induces autophagy in pancreatic cancer cells via endoplasmic reticulum stress- and mitochondrial stress-dependent pathways 3.8
Novel Form of JARID2 is Required to Regulate Differentiation in Keratinocytes. 3.78
Transciptomic profiling of human fetal lung samples 3.77
Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses 3.75
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis [d7+d14] 3.74
Differential expression of pancreatic cancer PANC1 cells treated with pilocarpine 3.73
Effect of circPTPRM on the biological behaviors of hepatocellular carcinoma cells in vitro and its clinical significance. 3.69
Next Generation Sequencing Facilitates Quantitative Analysis of Human Pluripotent Stem Cell-Derived Endocardial-like And Primary Cardiac Endothelial Cell Transcriptomes 3.69
Transcriptome sequencing of human coronary artery smooth muscle cell under treatment of nitrated fatty acid 3.68
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [RNA-Seq_human] 3.68
Dynamics of the human and viral m6A RNA methylomes during HIV-1 infection of T cells 3.67
Smad5 acts as an intracellular pH messenger and maintains bioenergetic homoeostasis 3.64
CRISPR-Cas9 combinatorial KO of epigenetic regulators in human ovarian cancer cells 3.6
Transcriptomic insights into human decidual and peripheral blood CD8 T cells 3.58
RNA-seq of Single-Cell Genotyping of Transcriptomes 3.58
Single-Cell Genotyping of Transcriptomes 3.58
UV_24h_GRO-Seq 3.57
Role of COP1 on MAP kinase transcriptional output in gastrointestinal stromal tumor 3.55
Transcriptomic profile of human embryonic renal corpuscles 3.55
ELAVL2-regulated transcriptional networks in human neurons link atlernative splicing, autism and human neocortical evolution 3.49
RNA seq with AML (NB4) cells upon FTO inhibition 3.49
ATF7IP-mediated stabilization of the histone methyltransferase SETDB1 is essential for heterochromatin formation by the HUSH complex 3.47
Assessing the impact of loss of ATF7IP and SETDB1 on the transcriptome 3.47
RNA-Seq analysis RPE1 cells following exposure to Nutlin-3 to identify target genes of p53 [tpo12] 3.47
Binding to SMN2 pre-mRNA-Protein complex elicits specificity for small molecule splicing modifiers 3.45
Sirt6 Oncogene Mediates PI3K/Akt Signaling Activation in Diffuse Large B-Cell Lymphoma 3.42
Nuclear HNRNPA2B1 HITS-CLIP and RNA-seq 3.42
Next Generation Sequencing Study of Circadian Changes in Transcriptome of Human Pineal Gland 3.41
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and AXL-/- astrocytes Transcriptomes 3.41
EZH2 inhibitor efficacy in non-Hodgkin lymphoma does not require suppression of H3K27 mono-methylation 3.39
EZH2 inhibitor efficacy in non-Hodgkin lymphoma does not require suppression of H3K27 mono-methylation [RNA-Seq] 3.39
B cells expressing the IgA receptor FcRL4 participate in the autoimmune response in patients with rheumatoid arthritis 3.38
High Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML 3.37
Global transcriptomic analyses of bronchial epithelial cells exposed to 5 ng/mL TGF-β1 and 10 nM Estrogen individually and in combination 3.37
JMJD3 and UTX Determine Fidelity and Lineage Specification of Human Neural Progenitor Cells [RNA-seq] 3.37
JMJD3 and UTX Determine Fidelity and Lineage Specification of Human Neural Progenitor Cells 3.37
Transcriptome analysis-identified long noncoding RNA CRNDE in maintaining endothelial cell proliferation, migration, and tube formation 3.33
Replication defective viral products exploit a cellular pro-survival mechanism to establish persistent infections 3.33
Histone demethylase LSD1 is required for germinal center formation and BCL6 driven lymphomagenesis 3.31
Transcriptional changes in lymphoma cells induced by LSD1 depletion 3.31
Interaction with WDR5 recruits MYC to a small cohort of genes required for tumor onset and maintenance 3.31
Human iPSC-based Modeling of Late-Onset Disease using Progerin-induced Aging 3.3
RNA-Seq comparative analysis of human neuroblastoma cells before and after their confrontation to the embryonic microenvironment 3.28
High-throughput RNA sequencing of human preovulatory cumulus and mural granulosa cells (mRNA) 3.18
Small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes 3.18
Super-Enhancers Promote Transcriptional Dysregulation in Nasopharyngeal Carcinoma 3.16
Super-Enhancers Promote Transcriptional Dysregulation in Nasopharyngeal Carcinoma [RNA-seq] 3.16
Histone Demethylase-Assisted Somatic Cell Nuclear Transfer Facilitates Derivation of Human Pluripotent Stem Cells 3.14
Tumors with TSC mutations are sensitive to CDK7 inhibition through NRF2 and glutathione depletion 3.12
Transcriptome analysis of human cumulus cells reveals hypoxia as the main determinant of follicular senescence. 3.11
CAR T cell trogocytosis and cooperative killing regulate tumour antigen escape 3.11
ELP1 splicing correction reverses proprioceptive sensory loss in familial dysautonomia 3.1
RNA-seq analysis of activated plasmacytoid dendritic cell subsets after viral infection 3.08
Epigenetic reprogramming of melanoma cells by vitamin C treatment 3.07
Genomic expression analysis of K562 cells expressing shRNA targeting lncRNA-IIRX and control cells 3.05
Comparative total RNA and mRNA sequencing and systems analysis reveals nascent transcriptional response to early HIV-1 infection in a CD4+ T cell line 3.04
RNA-sequencing of the GSI treatment of the CUTLL1 cell line 3.04
Low MITF/AXL ratio predicts early resistance to multiple targeted drugs in melanoma 3.03
Ectoderm specification of H1 human embryonic stem cells 3.03
Transcriptional profiling of JEG3 cells with HLA-G ablation via deletion of Enhancer L 3.01
EWS-Fli and LNC regulated genes in comparison to GFP samples 2.96
RNA-seq analysis of control and NRDE2-depleted breast cancer cells 2.96
TSLP acts on neutrophils to drive complement-mediated killing of methicillin-resistant Staphylococcus aureus 2.95
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques 2.9
High capacity of the endoplasmic reticulum to prevent secretion and aggregation of amyloidgenic proteins 2.9
RNA sequencing of MDA-MB231 and U2OS cancer cell lines exposed to the alkylating agent methyl methanesufonate (MMS) and classical chemotherapeutics  2.88
RNA-Sequencing of HepG2 cells treated with TGFBeta 2.87
Loss of 9p21 regulatory hub promotes kidney cancer progression by upregulating HOXB13 2.86
Differential mRNA expression upon 9p21 deletion in HEK TE single-cell derived clones 2.86
IL-6/Stat3-Dependent Induction of Distinct, Obesity-Associated Natural Killer Cells Deteriorates Energy and Glucose Homeostasis 2.84
RNA-Guided Human Gene Activation by Cas9/CRISPR-Based Engineered Transcription Factors 2.84
Genome-Wide Transcriptional Effects of the Anti-Cancer Agent Camptothecin 2.83
Sequencing of ponatinib-resistant LC-2/ad derivatives (PR1 and PR2) and parental LC-2/ad cells 2.83
Transcription control by the ENL YEATS domain in acute leukemia 2.81
Transcription control by the ENL YEATS domain in acute leukemia [RNA-seq] 2.81
RNA Seq of HMVEC under hypoxia 2.81
Endothelial-AGO1-knockout (EC-AGO1-KO) mice and wild-type (WT) littermates 2.81
Single Cell RNA-sequencing of cell types isolated by FACS from normal human prostates 2.81
Bulk RNA-sequencing of cell types isolated by FACS from normal human prostates 2.78
RNA-seq of cultured human kidney peritubular microvascular endothelial cells following exposure to cyclosporine A 2.73
Whole Transcriptomic Sequencing of Metastatic Castration Resistant Prostate Cancer Samples 2.72
Premature polyadenylation-mediated loss of stathmin-2 is a hallmark of TDP-43-dependent neurodegeneration 2.72
Gene expression profiling of leukemia cells following asparagine depletion 2.68
quanTIseq: quantifying immune contexture of human tumors 2.68
Total RNA was extracted from three samples of CD33 CAR or control T cells from three different donors 2.67
Regulation of hypoxia-inducible factor activity by ZMYND8 2.67
Time series single-cell transcriptomic analysis of AEC2 directed differentiation 2.67
RNA-seq analysis of umbilical cord blood cells upon knockdown of NAP1L3 2.66
Regulation of protein translation during mitosis 2.65
Genomic profiling of human spermatogonial stem cells [BulkRNA-Seq] 2.64
Characterisation of HIF-dependent alternative isoforms in pancreatic cancer 2.63
Integrin αvβ3 acting as membrane receptor for thyroid hormones mediates angiogenesis in malignant T cells 2.62
Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours 2.58
Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours [RNA-seq] 2.58
Comparative analysis of kidney organoid and adult human kidney single cell and single nucleus transcriptomes 2.56
Carcinoma-astrocyte gap junctions promote brain metastasis by cytosolic dsDNA response transfer 2.55
Altered mRNA splicing by mutant p53 activates oncogenic RAS in pancreatic cancer 2.45
High-throughput RNA sequencing on circular RNA profiles of human pancreatic cancer cell lines and gemcitabine resistant pancreatic cancer cell lines. 2.43
Glioma-derived miRNA-containing extracellular vesicles induce angiogenesis by reprogramming brain endothelial cells 2.42
Glioma-derived miRNA-containing extracellular vesicles induce angiogenesis by reprogramming brain endothelial cells (longRNA-seq) 2.42
Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures 2.41
RNA sequencing of heart samples of myotonic dystrophic (DM1) patients 2.4
scRNASeq analysis of cycling cardiomyocytes 2.39
Transcriptome analysis of Riociguat and Vehicle control treatment in human hematopoietic stem and progenitor cells 2.37
Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome 2.36
Induction and Therapeutic Targeting of Human NPM1c+ Myeloid Leukemia in the Presence of Autologous Immune System in Mice 2.36
Radiation enhances melanoma response to immunotherapeutic and synergizes with benzodiazepines to promote improved anti-tumor activity 2.32
EWSR1 influences alternative splicing through direct and indirect mechanisms 2.31
Multiplexed engineering and analysis of endogenous enhancer activity in single cells: Mosaic-Seq of beta-globin locus (pooled infection) 2.31
CRISPR activation of long non-coding RNAs transiently expressed during cortical neuron differentiation associated with Field, et al, Stem Cell Reports 2018 2.3
Determining effects of microbial metabolite, Urolithin A on colon epithelial cells 2.29
The ribonuclease activity of SAMHD1 is required for HIV-1 restriction 2.28
RNA-Seq Samples of siTFE3 in 8988T PDA Cell Line to Investigate Transcriptional Control of the Autophagy-Lysosome System 2.26
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq] 2.2
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice [HCT116_RNA-seq] 2.19
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice 2.19
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation (RNA-Seq) 2.16
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation 2.16
Insulin induced alterations in chromatin acetylation and transcriptome in triple negative breast cancer cells 2.14
Single-cell analysis of human kidney organoids 2.13
Receptor tyrosine kinase signaling promotes post-embryonic morphogenesis and survival of glia and neural progenitor cells 2.12
Antibody-Mediated Inhibition of MICA/B Shedding Promotes NK Cell-Driven Tumor Immunity 2.09
The CDK7 Inhibitor THZ1 Alters RNA Polymerase Dynamics at the 5’ and 3’ Ends of Genes 2.07
Global transcriptome analysis of HAP1 cells 2.06
Viral shRNA Knockdown of INS Promotor Activity in EndoC-βH1 Cells  2.05
4C-seq of insulin promoter, knockdown of INS promoter activity and Genome-wide maps of chromatin state in EndoC-βH1 Cells 2.05
Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines 2.04
Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines (mRNA-Seq) 2.04
Early transcriptome profiling of microRNA-mediated neuronal reprogramming [RNA-seq timecourse] 2.03
The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition [RNA-Seq] 2.01
The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition 2.01
SHANK2 mutations associated with autism spectrum disorder cause hyperconnectivity of human neurons 2.01
RNA-Seq characterization of human H1-derived NPC differentiation timecourse 1.98
Mapping interactions for the TNIP2 hub protein 1.96
RNA seq comparison between scrambled and shGRP78 cells 1.95
Isolation and sequencing of AGO-bound RNAs reveals characteristics of stem-loop processing in vivo 1.95
Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma 1.94
siRNA-mediated knockdown 1.94
Profiling of protrusion-enriched RNAs from human breast cancer cell line MDA-MB-231 1.94
RNA sequencing of CACO-2 cells incubated with bifidobacteria grown on human milk oligosaccharides. 1.93
TGF-b-activated LncRNA LINC00115 is a critical regulator for glioma stem-like cell tumorigenicity 1.92
GATA2 is Dispensable for Generation of Hemogenic Endothelium But Required for Endothelial-to-Hematopoietic Transition 1.91
Non-coding and coding transcriptional profiles are significantly altered in pediatric Retinoblastoma tumors 1.89
UBC9 knockdown in bladder cancer T24 cell lines 1.87
Anaylsis of the effect of down-regulation of the EWS-FLI1 fusion protein in Ewing Sarcoma cells by RNA-seq. 1.86
Single cell analysis of smooth muscle cell phenotypic modulation in vivo during disease in mice and humans [human scRNA-seq] 1.86
Single cell analysis of smooth muscle cell phenotypic modulation in vivo during disease in mice and humans 1.86
m6A level and isoform characterization sequencing (m6A-LAIC-seq) reveal the census and complexity of the m6A epitranscriptome 1.84
Human Treg NaCl stimulation 1.82
Transcriptomic analysis to underly the heterogeneity between 4 cellular models derived from patients diagnosed with pediatric high-grade gliomas under controlled atmosphere (modulation of oxygen level). 1.82
Effector and regulatory T cells roll at high shear stress by inducible tether and sling formation 1.73
Transcriptomic analysis to functionally map the intrinsically disordered domain of EWS/FLI [Experiment 1] 1.7
Transcriptional dependencies in diffuse intrinsic pontine glioma 1.66
RNA-Seq of PRMT1 overexpression ECA109 cells 1.62
Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B-cell Responses to Influenza Hemagglutinin 1.61
RNA-seq analysis of Retinoic Acid and Non-treated Control hiPSCs 1.6
Functional role of CPPED1 in trophoblasts. 1.59
Impact of Escherichia coli K12 and O18 on human platelets: effects on platelet activation, spliced platelet RNAs and proteins 1.57
Epigenetic reprogramming of immune cells in women with PCOS impact genes controlling reproductive function 1.56
Epigenetic reprogramming of immune cells in women with PCOS impact genes controlling reproductive function [RNAseq] 1.56
Transcriptional response of human endocervical epithelial A2EN cells to infection with wild-type or CpoS-deficient Chlamydia trachomatis L2/434/Bu 1.55
Small-molecule targeting of brachyury transcription factor addiction in chordoma 1.53
Discovery of Drug Candidates that Inhibit and Eliminate Zika Virus Infection in Fetal and Adult Brain 1.51
Comparative analysis of WT and ZEB1 KO cells in different stages during differentiation 1.49
The MEF2B Regulatory Network - RNA-seq data 1.49
The MEF2B Regulatory Network 1.49
Genome wide characterization of a STAT1-independent antiviral and immunoregulatory transcriptional program induced by IFNβ and TNFα reveals non-canonical STAT2 and IRF9 pathways 1.49
Mitochondrial unfolded protein response controls matrix pre-RNA processing and translation 1.47
Generation of KRAS signatures using immortalized isogenic lung cells. 1.47
Human ovarian granulosa cell transcriptome 1.46
RNA-seq after siRNA targeting DDX24 applied to iHUVECs cell lines 1.46
Evaluation of the effectiveness of semen collection and sperm purification methods for spermatozoa transcript profiling 1.42
A single cell reference map for human blood and tissue T cell activation 1.42
Sodium butyrate ameliorates aSyn-induced transcription deregulation and DNA damage 1.4
Functional Inflammatory Profiles Distinguish Myelin-Reactive T Cells from Patients with Multiple Sclerosis 1.39
miRNAs affected by antagomiR-17 treatment 1.38
Low H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas 1.38
Prolyl Hydroxylase Substrate Adenylosuccinate Lyase Is An Oncogenic Driver In Triple Negative Breast Cancer 1.36
RNA-seq and Hi-C sequencing of neutrophil-like cells migrated through large or small pores 1.36
Migration through a small pore disrupts inactive chromatin organisation in neutrophil-like cells [RNA-seq] 1.36
Primate-specific gene TMEM14B promotes cortical expansion and folding 1.35
Long Non-coding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity 1.35
Ex vivo Dynamics of Human Glioblastoma Cells in a Microvasculature-on-a-Chip System Correlates with Tumor Heterogeneity and Subtypes 1.35
CD48-dependent protective autophagy in conventional human T cells promotes restimulation-induced cell death resistance 1.35
BCL6 confers KRAS-mutant NSCLCs resistance to BET inhibitors 1.33
Translating transcriptome of cancer cells in situ in mesenchymal-rich tumor microenvironment 1.32
Defining the Transcriptional Landscape during Cytomegalovirus Latency with Single-Cell RNA Sequencing 1.31
Comparison of single-cell transcriptomics quality between unfixed cells and cells that were fixed and mock stained according to the RAID procedure 1.31
Kinetics of cytokine receptor trafficking determine signaling and functional selectivity 1.28
Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing (Total RNA sequencing) 1.28
Gene expression signatures of innate lymphoid cells from human blood 1.28
Global Long Terminal Repeat activation participates in establishing the unique gene expression program of classical Hodgkin Lymphoma [Primary RNA-Seq] 1.27
Transcriptome analysis of diverse cell types infected with human cytomegalovirus 1.26
Circular RNA profiling reveals the different distribution/characteristic and possible transport mechanism among the subcellular fractions 1.25
Human Treg IFNg/IL-10 subpopulations 1.25
Next Generation Sequencing Facilitates Quantitative Analysis of UVB(20mJ/cm2 and 40mJ/cm2) exposed and untreated HaCaT keratinocytes Transcriptomes 1.24
PRMT5 Interacts with the BCL6 Oncoprotein and is Required for Germinal Center Formation and Lymphoma Cell Survival 1.24
The contribution of Alu exons to the human proteome 1.23
Transcriptome of melanoma cell lines resistant to inhibition of the MAPK pathway. 1.19
Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion 1.19
Reduced CYFIP1 in human neural progenitors as 15q11.2 deletion model: donor specific dysregulation of schizophrenia/epilepsy genes 1.16
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells [Toxin] 1.13
RNA sequencing reveals transcriptional changes after Hippo signaling activation in podocytes 1.09
Small-molecule targeting of brachyury transcription factor addiction in chordoma [rnaseq_compound] 1.09
RNA-Seq analysis of cSCC cells followed by siRNA-induced gene knockdown of C1s. 1.05
The expression of genes encoding palmitoylated proteins in axonal and synaptic compartments is affected in CLN1/PPT1 transfected neuronal cells 1.05
Single-cell transcriptomic analysis of tissue resident memory T cells in human lung cancer [ 10x genomics] 1.05
Dissecting cell composition and cell-cell interaction network of normal human heart tissue by single-cell sequencing 1.04
IL-6 augments IL-4-induced polarization of primary human macrophages through synergy of STAT3, STAT6 and BATF transcription factors 1.03
Transcriptomic analysis of ERR alpha orphan nuclear receptor 1.0
Transcriptional landscape changes during human embryonic stem cell derivation 0.97
The effect of slow and rapid H2S production on the levels of LPS-induced proinflammatory mediators and transcription in different human cell cultures 0.96
CD161+ Tconv and Treg share transcriptome and display a migratory phenotype which is modified at the inflamed site 0.94
Whole transcriptome profile of citrulline-specific B cells from patients with rheumatoid arthritis 0.94
Apoptosis enhancing drugs overcome innate platinum resistance in CA125 negative tumor initiating populations of high grade serous ovarian cancer 0.92
Transcriptome of iPSC-derived Cerebral Organoids with Heterozygous Knockout in CHD8 0.91
RNA-seq of cells with TET1 knockout 0.85
Total RNA-Seq data from leukemic patients with complex structural variants 0.84
Effect of low-dose sorafenib and alkylating agents in inflammation and angiogenesis in breast cancer 0.83
shRNA knockdown of YAP1 in HCC364 cells, various drug conditions 0.82
HBEC-shp53-PCHD7 0.81
Trisomy of a ‘Down syndrome critical region’ globally amplifies transcription via HMGN1 overexpression [NALM6 RNA-Seq] 0.77
Neuronal deletion of Gtf2i, associated with Williams syndrome, causes behavioural and myelin alterations rescuable by a remyelinating drug 0.77
Neuronal deletion of Gtf2i, associated with Williams syndrome, causes behavioural and myelin alterations rescuable by a remyelinating drug [human] 0.77
RNA sequencing of CACO-2 cells incubated with Bifidobacteria breve grown on human milk oligosaccharides. 0.77
C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi’s Sarcoma Associated Herpesvirus (KSHV) 0.76
Platelet Transcriptome Profiling in HIV and ABCC4 as a Biomarker of Platelet Activity 0.76
Dissecting cell composition and cell-cell interaction network of human disease heart tissue by single-cell sequencing 0.75
SAMHD1 is recurrently mutated in T-cell prolymphocytic leukemia [RNA-seq] 0.75
Transcriptome-wide modulation of splicing by the exon junction complex 0.73
Histone Demethylases KDM3A and KDM4C regulate mesenchymal stromal cell senescence and bone aging through condensin-mediated heterochromatin organization 0.69
Enhancement of Arterial Specification in Human Pluripotent Stem Cell Cultures Promotes Definitive Hematoendothelial Program with Broad Myelolymphoid Potential 0.69
RNA sequencing data of whole blood cells of normal glucose tolerant (NGT) and gestational diabetes (GDM) pregnant women 0.66
Multiplexed engineering and analysis of endogenous enhancer activity in single cells: Mosaic-Seq of beta-globin locus (separate infection) 0.65
Characterization of human ILC2 subsets 0.65
CD133hi, Notchhi, DP (double positive) and DN (double negative) in GBML8 and GBML20, both patient-derived glioblastoma tumorsphere cultures 0.64
The transcriptomic landscape of MAIT cell development in the thymus (NN41 RNAseq data set) 0.62
Aneuploidy-induced cellular stresses limit autophagic degradation. 0.62
EPCR Expression Defines the Most Primitive Subset of Human HSPC and Is Required for Their In Vivo Activity 0.61
RNA-seq and small RNA-seq from WT and ADAR1 knockdown H9 lines and their differentiation to specific types of neurons 0.61
Transcriptome Analysis Reveals Distinct Responses to Physiologic versus Toxic Manganese Exposure in Human Neuroblastoma Cells 0.6
Transcriptome-wide discovery of microRNA binding sites in human brain by Ago2 HITS-CLIP 0.6
Rnase L reprograms translation by widespread mRNA turnover escaped by antiviral mRNAs 0.6
RNA-SEQ assay for wild type and CRISPR induced endoglin knockout human pulmonary artery smooth muscle cells (PASMC) 0.59
FOXP1 orchestration of ASD-relevant signaling pathways. 0.57
A rare subpopulation of melanoma cells with low expression of metastasis suppressor NME1 has a neural crest-like phenotype and is highly metastatic in vivo 0.56
Transcriptional Down-regulation of CCR5 in a Subset of HIV+ Controllers (RNA-Seq) 0.55
Transcriptional Down-regulation of CCR5 in a Subset of HIV+ Controllers 0.55
DNMT1-associated long non-coding RNA regulate global gene expression and DNA methylation in colon cancer 0.51
Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq 0.5
hNSCs siRNA NOVA2 0.5
Aging-associated patterns in the expression of human endogenous retroviruses 0.5
The transition from proliferation to quiescence in glioblastoma stem-like cells requires Ca2+ signaling and mitochondria remodeling 0.49
Rate of elongation by RNA polymerase II is influenced by specific gene features and histone modifications 0.48
Networks of cultured iPSC-derived neurons reveal the human synaptic activity-regulated adaptive gene program 0.48
Function and hormonal regulation of GATA3 in human first trimester placentation 0.47
Genetic and Epigenetic Landscapes of Laterally Spreading Tumors of the Colorectum 0.46
Maternal-biased H3K27me3 correlates with paternal-specific gene expression in the human morula 0.46
A runaway PRH/HHEX-Notch3 feedback loop drives cholangiocarcinoma (RNA-Seq) 0.46
Transcriptional control of subtype switching ensures adaptation and growth of pancreatic cancer 0.45
Disease-associated mutation in SRSF2 misregulates splicing by altering RNA binding affinities 0.45
JQ1 +/- Vemurafenib in BRAF mutant melanoma (A375) 0.4
Pomalidomide inhibits PD-L1 induction to promote anti-tumor immunity 0.39
Novel Non-catalytic Substrate-selective p38α-specific MAPK Inhibitors with Endothelial-Stabilizing and Anti-inflammatory Activity 0.38
Induction of extracellular adenosine salvage and metabolic quiescence regulate the transitional to follicular B cell checkpoint in humans. 0.38
Direct in vivo evidence for B-cell receptor and NF-KB activation in mantle cell lymphoma: role of the lymph node microenvironment and activating mutations. [RNA-Seq] 0.37
Direct in vivo evidence for B-cell receptor and NF-KB activation in mantle cell lymphoma: role of the lymph node microenvironment and activating mutations. 0.37
naive T cell heterogeneity after neonatal thymectomy 0.36
Transcriptome analysis of reticulated platelets reveals a prothrombotic profile [mRNA-Seq] 0.36
Transcriptome analysis of reticulated platelets reveals a prothrombotic profile 0.36
Truncation of LOC100288798 (SLC38A4-AS) lncRNA in human haploid KBM7 cell line 0.36
Single cell RNA-seq resolves lineage-specific activation dynamics of human blood and tissue T cells 0.31
Profiling premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis 0.28
RNA-Seq of CD34+ Bone Marrow Progenitors from Healthy Donors 0.26
Human stem cell based models of neuronal migration provide insight into neurological disease pathogenesis and potential treatment 0.24
Impact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol 0.24
The Cushing's disease adipose gene expression profile reveals effects of long term glucocorticoids on adipose tissue lipid, protein and glucose metabolism 0.23
Cellular recruitment by podocyte-derived pro-migratory factors in assembly of the human renal filter 0.21
RNASeq of Healthy Human Skin Tregs and CD4 Teffs versus Psoriatic Human Skin Tregs and CD4 Teffs 0.21
Genome-wide expression analysis of human hTert immortalized fibroblasts after downregulation of MCM2 & MCM7 0.21
THZ1 targeting CDK7 suppresses STAT transcriptional activity and sensitizes T-cell lymphomas to BCL2 inhibitors 0.21
Does osteogenic potential of clonal human bone marrow mesenchymal stem/stromal cells correlate with their vascular supportive ability? 0.15
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome 0.15
Transcriptional profiling of growing and senescent WT and IL-1R-depleted IMR90 cells 0.14
RNA-seq of primary patient AML samples 0.14
mRNA expression profiling in MDA-MB-231 (LM1) cells with a tet-incible MBD2 or p66α knock down, or treated with MBD2-targeting small molecule ABA or APC 0.14
Self-associated molecular patterns mediate cancer immune evasion by engagement of Siglec receptors 0.12
A toxicogenomics approach to screen chlorinated flame retardants tris(2-chloroethyl) phosphate and tris(2-chloroisopropyl) phosphate for potential health effects 0.11
ZNF599 and DNMT3A coordinately control nuclear envelope organization by repression of SUN4 expression 0.1
Transcriptome-wide discovery of microRNA binding sites in human brain by Ago2 HITS-CLIP [Ago2-miRNA-target mRNA complexes] 0.09
Tri-mannose grafting of chitosan nanocarriers remodels the macrophage response to bacterial infection 0.07
mRNA Sequencing of Human PromoCells Using 3'-directed Digital Gene Expression (3'-DGE) Technique 0.07
FOXO1 is an oncogenic mediator in AML1-ETO leukemia 0.06
RNA-Seq and ChIP-Seq reveals SQSTM1/p62 as a key mediator of JunB suppression of NF-kB-dependent inflammation 0.06
JunB control of keratinocyte-mediated inflammation [RNA-seq] 0.06
RNAseq of CD8+ and CD8- MAIT cells in human peripheral blood 0.06
Parallel T-cell cloning and deep sequencing of the transcripts of human MAIT cells reveal stable oligoclonal TCRβ repertoire 0.05
ALS implicated protein TDP-43 sustains levels of STMN2 a mediator of motor neuron growth and repair 0.04
Gene expression changes in HSV-1 infected HeLa cells with knockdown of B2M 0.03
Single-cell RNAseq analysis of the empty and i8TF cell lines after 3 days of BL-CFC culture 0.01
Single cell transcriptomics reveals new insights on the dynamical function of transcription factors during blood stem and progenitor cell formation 0.01
RNA-Seq analysis of human neutrophils isolated by different protocols (Polymorphprep and negative selection) and incubated with and without in vitro cytokine stimulation 0.01
RNA seq analysis of human macrophages after treatment of glimepiride versus empagliflozin. 0.0


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