Gene Query: FOXH1

Dataset Description Geneva Score
MARS Seq data from human cortical organoids 53.01
Self-organized amniogenesis by human pluripotent stem cells in a biomimetic implantation-like niche 32.18
Global expression profiles in cardiac progenitor cells generated by ISX-9 27.29
Global mRNA expression profile in cardiac progenitor cells generated by ISX-9 27.29
GLIS3 Transcriptionally Activates WNT Genes to Promote Differentiation of Human Embryonic Stem Cells to Posterior Neural Progenitors 24.06
Detailed genomic and molecular characterization of Indian induced pluripotent stem cell lines 22.46
Safeguarding nucleolar homeostasis by CBX4 alleviates senescence and osteoarthritis 20.63
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 [HET] 19.7
Mechanism suppressing H3K9 trimethylation in pluripotent stem cells and its demise by polyQ-expanded huntingtin mutations [RNA-seq] 19.17
Mechanism suppressing H3K9 trimethylation in pluripotent stem cells and its demise by polyQ-expanded huntingtin mutations 19.17
RNA-Seq analysis of neurons derived from induced pluripotent stem cells reprogrammed from dental pulp 17.47
RNA-seq of UGP2 mutant human embryonic stem cells and in vitro differentiated neural stem cells 16.92
Isogenic patient-derived human iPSCs, wild-type or heterozygous for PIK3CA-E418K 16.62
Transcriptome analysis of genetically matched human induced pluripotent stem cells disomic or trisomic for chromosome 21 16.58
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 [HOM] 16.23
Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics 16.19
Transcriptome analysis of human embryonic stem cells (hESCs) and human fibroblasts upon rapamycin 16.15
Verification and rectification of cell type-specific splicing of a Seckel syndrome-associated ATR mutation using iPS cell model 16.06
MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia 15.09
MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia [inhibitor MRT199665] 14.86
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 2] 14.78
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells 14.31
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells [Endoderm RNA-seq and ChIP-seq data sets] 14.31
Modeling Trilateral Retinoblastoma using Human Embryonic Stem Cells 14.27
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival [RNA-Seq] 13.64
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival 13.64
Single-cell transcription profiling in KS1 patient iPSCs and NPCs 13.61
The Unfolded Protein Response Regulator, ATF6, Promotes Mesodermal Differentiation 13.28
Transcript abundance in A-T-derived iPSC: Comparing isogenic cells to unrelated individual 13.21
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 13.13
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 [RNA-seq] 13.13
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors [RNA-Seq] 12.71
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors 12.71
Rapid neurogenesis through transcriptional activation in human stem cell (RNA-Seq) 12.43
SEUSS: A scalable screening platform to assess transcriptomic and fitness effects of transcription factor overexpression 12.26
Differential expression of human parthenogenic stem cells, neural stem cells and DA progenitors. 12.15
RNA-seq data for non-targeting siRNA and CDK11 siRNA transfection in SHhES8 cells 12.06
Differentially expressed vascular development genes for iPSC-ECs from CDI 12.0
High-efficiency RNA-based reprogramming of human primary fibroblasts 11.53
RNA-sequencing based transcriptome-wide expression profiling of Cynomolgus monkey and human IPSCs in vitro differentiated into endothelial cells 11.42
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies [RNA-seq data set 2] 11.19
Lineage specific differentiation is influenced by state of human pluripotency [RNA-seq] 11.13
Lineage specific differentiation is influenced by state of human pluripotency 11.13
The effect of insulin on mRNA transcription of human pluripotent stem cells 11.0
RNA-Seq of cKIT+ sorted cells from 16-16.5 week old fetal testes and ovaries and RNA-Seq of TRA-1-60+ H1 hESCs 10.83
Dissecting the dynamics of signaling events in the BMP,WNT and NODAL cascade during self-organized fate patterning in human gastruloids 10.82
Analysis of the Clustered Protocadherin (cPcdh) Locus in Human Pluripotent Stem and Derived Cells [RNA-seq II our of II] 10.82
The effect of engineered del(7q) on induced pluripotent stem cells (iPSCs) derived from patients with Shwachman Diamond Syndrome (SDS). 10.56
Differentially expressed (DE) genes analysis in synovial fluid mesenchymal stem cells (SF-MSCs), SF-MSC derived iPSCs and iPSC derived MSCs (iPSC-MSCs) 10.45
Reprogramming by de-bookmarking somatic transcriptional program via targeting the BET bromodomains 10.41
Dioxin and AHR impairs mesoderm gene expression and cardiac differentiation in human embryonic stem cells (RNA-Seq) 9.52
Dioxin and AHR impairs mesoderm gene expression and cardiac differentiation in human embryonic stem cells 9.52
Comparative principles of DNA methylation reprogramming during human and mouse in vitro primordial germ cell specification [Mouse and Human RNA-seq and BS-seq] 9.41
Comparative principles of DNA methylation reprogramming during human and mouse in vitro primordial germ cell specification 9.41
Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq 9.39
Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 9.39
Total RNA sequencing of prospective axial stem cell cultures derived from human pluripotant stem cells 9.36
iPSC-Derived Cholangiocytes 9.16
A single-cell atlas of the human cortex reveals drivers of transcriptional changes in Alzheimer’s disease in specific cell subpopulations 9.13
Transcriptome analysis of H9 hESC derived cerebral organoids 9.06
Next Generation Sequencing of human SMA and healthy control Motor Neurons 9.06
A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging 9.05
High-throughput sequencing of pluripotent cells 8.96
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment [RNA-Seq] 8.89
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment 8.89
Dynamic reorganization of nuclear architecture during human cardiogenesis 8.87
Dynamic reorganization of nuclear architecture during human cardiogenesis [RNA-seq] 8.87
Targeted reactivation of FMR1 transcription in FXS embryonic stem cells 8.74
Rescue of Fragile X syndrome by DNA methylation editing of the FMR1 8.56
Rescue of Fragile X syndrome neurons by DNA methylation editing of the FMR1 gene [RNA-seq] 8.56
Human Embryoid Body Transcriptomes Reveal Maturation Differences Influenced by Size and Formation in Custom Microarrays 8.41
Single-Cell reconstruction of differentiation trajectory reveals essential dynamics in human cardiac lineage commitment 7.92
Culture-induced recurrent epigenetic aberrations in human pluripotent stem cells [RNA-seq] 7.73
Culture-induced recurrent epigenetic aberrations in human pluripotent stem cells 7.73
Transcriptional profiling of microglia; current state of the art and future perspectives 7.52
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq2] 7.51
Epigenetic and transcriptional analysis of mesoderm progenitor cells identifies HOPX as a novel regulator of hemogenic endothelium 7.48
SNHG15 is a bifunctional MYC-regulated noncoding locus encoding a lncRNA that promotes cell proliferation, invasion and drug resistance in colorectal cancer by interacting with AIF 7.33
RNA-seq of naive and primed ES cells (NHSM) 7.32
Next Generation Sequencing Analysis of human embryonic stem cells derived MESP1-mTomato reporter cells 7.28
BI Human Reference Epigenome Mapping Project 7.06
RNA-Seq profiling of days 0, 7 and 18 kidney organoids differentiated from three separate vials of starting material 6.96
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics 6.91
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (RNA-Seq) 6.91
Derivation and differentiation of haploid human embryonic stem cells [RNA-Seq 1] 6.86
Transcriptional alteration after ionizing radiation exposure in human fibroblasts, iPSCs and NPCs 6.65
Epigenome regulation during epidermal lineage commitment [RNA-seq] 6.63
Derivation and differentiation of haploid human embryonic stem cells 6.55
mRNA expression data from ESCs derived by polar body transfer reconstructed embryos (PBTESCs) 6.48
KRASG12C inhibition produces a driver-limited state revealing collateral dependencies 6.41
RNA sequencing for human induced pluripotent stem cell cardiomyocyte differentiation 6.38
Effects of Cardiac Glycosides on RNA Expression in Prostate Cancer LNCaP-abl Cells 6.37
RNA-seq analysis of RALD iPSCs after in vitro differentiation 6.2
Post-transcriptional remodelling is temporally deregulated during motor neurogenesis in human ALS models 6.2
Polycomb complexes associate with enhancers to promote oncogenic transcriptional programs in cancer 6.08
Ectoderm specification of H1 human embryonic stem cells 5.97
Examining serotonergic neuron differentiation from human iPSCs 5.9
Landscape of Hematopoiesis Described in Induced Pluripotent Stem Cells and Human Bone Marrow 5.9
In vivo generation of post-infarct human cardiac muscle by laminin-promoted cardiovascular progenitors [LN-521 or LN-521+LN-221] 5.84
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of human mesenchymal stem cells differentiation from human embryonic stem cells and adult bone marrow mesenchymal stem cells 5.6
Enriched retinal ganglion cells derived from human embryonic stem cells (RNA-seq) 5.34
Single-cell RNA-Seq Investigation of Foveal and Peripheral Expression in the Human Retina 5.33
mRNA expression data from human parthenogenetic haploid ESCs (hPGES), normal ESCs (H9) and human fibroblast 5.27
Genomic analysis of human parthenogenetic haploid ESCs (hPGES), normal human ESCs(H9) and human forskin fibroblast 5.27
Engineering Patient-Specific Tissue Implants 5.16
Histone Demethylase-Assisted Somatic Cell Nuclear Transfer Facilitates Derivation of Human Pluripotent Stem Cells 5.16
Cerebellar differentiation in Ataxia-Telangiectasia 5.12
A myogenic double reporter human pluripotent stem cell line allows prospective isolation of skeletal muscle progenitors 5.06
5.05
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency 5.03
Loss of the Chr16p11.2 candidate gene QPRT leads to aberrant neuronal differentiation 5.01
Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain 4.9
The acetyllysine reader BRD3R promotes human nuclear reprogramming and regulates mitosis 4.88
Characterization and therapeautic application of mesenchymal stem cells with neuromesodermal origin from human pluripotent stem cells 4.8
Cellular recruitment by podocyte-derived pro-migratory factors in assembly of the human renal filter 4.69
RNA-Seq Analysis in hES/ iPS cell-derived neuronal samples 4.68
RNA-seq analysis in Cornea epithelial cells (CECs), skin epithelial cells (SECs), LSCs after knocking down PAX6 (3-D shPAX6 LSCs) and SESCs transduced with PAX6(3-D PAX6+ SESCs) upon 3-D differentiation 4.65
The LRF/ZBTB7A transcription factor is a BCL11A-independent repressor of fetal hemoglobin 4.57
mRNA gene expression profiling in a human AML cell line treated with small molecule inhibitors that impact different RNA polymerase transcription complexes, or their combination, in comparison to a global DNA-damaging anthracycline compound 4.57
Antiviral innate immunity of hepatitis C virus-infected stem cell-derived hepatocytes 4.49
Transcriptomic analysis of human iPS cells derived from fragile X syndrome patients during neural differentiation 4.46
Next Generation Sequencing Facilitates Quantitative Analysis of mesoderm posterior bHLH transcription factor 1(MESP1)+ and MESP1- cells' Transcriptomes 4.41
Laminin-guided highly efficient endothelial commitment from human pluripotent stem cells [Bulk RNA-Seq] 4.32
mRNA expression in iPS cells generated by a synthetic self-replicative RNA 4.3
Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury [human iPS] 4.18
Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury 4.18
DDX54 regulates transcriptome dynamics during DNA damage response [RNA-seq2] 4.13
Poly(A)-ClickSeq resolves CF25-mediated alternative poly-adenylation, HeLa 4.09
Transcriptome profiling of H1-iCas9 cells grown on laminin and on MEFs 4.08
Single-cell RNA sequencing-based CRISPRi screening resolves molecular drivers of early human endoderm development [set 1] 4.06
Error-free and error-prone DNA repair gene expression through reprogramming and passage in human iPS cells 3.95
Heterozygous and homozygous knock-in of PIK3CA-H1047R into human iPSCs 3.94
Characterization of Type I Interferon pathway during Hepatic Differentiation of Human Pluripotent Stem Cells and hepatitis C virus infection 3.92
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies 3.92
H3B-8800, a novel oral splicing modulator, induces lethality in spliceosome mutant cancers [K562] 3.83
Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells 3.82
Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing 3.79
RNA-Seq from early time points in the kidney differentiation protocol 3.74
FGF2 regulation of gene expression in stable inducible Neurons 3.71
A novel Menin-MLL inhibitor induces specific chromatin changes and eradicates disease in models of MLL-rearranged leukemia [RNA-Seq II] 3.68
mRNA sequencing of the global effect of SOX2 on gene expression in hESC and hESC derived NPCs. 3.68
Genome-wide maps of m6A circRNAs identify widespread and cell-type-specific methylation patterns that are distinct from mRNAs 3.64
Short-term effect of Boost versus Radical doses of Intraoperative electron Radiotherapy in breast cancer tumor bed using high-throughput approaches 3.55
Regulation of DNA methylation landscape in human somatic cell reprogramming by miR-29 family (RNA-seq) 3.45
Regulation of DNA methylation landscape in human somatic cell reprogramming by miR-29 family 3.45
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq] 3.41
PRC2 specifies ectoderm lineages and maintains pluripotency in primed but not naïve ESCs 3.4
Effect of BCL11B overexpression on transcriptome of T-cell acute lymphoblastic leukemia (T-ALL) cells 3.22
Characterization and transplantation of enteric neural crest cells from human induced pluripotent stem cells 3.21
Single-Cell RNA Sequencing Reveals Metallothionein Heterogeneity during hESC Differentiation to Definitive Endoderm [RNA-Seq] 3.19
Progressive motor neuron pathology and the role of astrocytes in a human stem cell model of VCP-related ALS 3.17
cKIT+ sorted cells from 57-137 day old fetal testes and ovaries 3.12
RNA-Seq of cKIT+ sorted cells from 53-137 day old fetal testes and ovaries and RNA-Seq of TRA-1-81+ H1 and UCLA1 hESCs. 3.12
Expression profiles of cultured human epididymis cells reveal the functional diversity of caput, corpus and cauda regions. 2.94
Transcriptome analysis of PRMT6 knock-out in NT2/D1 cells 2.84
Genomic location of PRMT6-dependent H3R2 methylation is decisive for the transcriptional outcome of associated genes 2.84
Transcription-dependent control of stem cell self-renewal and differentiation by the splicing factor U2AF1 2.83
Bach1 Regulates the Self-renewal and Mesendodermal Differentiation of Human Embryonic Stem Cells 2.82
yylncT acts as a gatekeeper of the mesodermal transcriptional program by local modulation of DNMT3B [human_2] 2.8
In situ CAPTURE of chromatin interactions by biotinylated dCas9 2.79
RNA-seq transcriptonal profiling in human K562 cells with or without dCas9 and sgRNAs 2.79
Targeted differentiation of regional ventral neuroprogenitors and related neuronal subtypes from human pluripotent stem cells 2.77
Interactions of aCPs with Cytosine-rich Polypyrimidine Tracts Enhance Splicing of Cassette Exons 2.75
m6A level and isoform characterization sequencing (m6A-LAIC-seq) reveal the census and complexity of the m6A epitranscriptome 2.73
Transcriptome variation among human embryonic stem cell lines impacts on their differentiation 2.72
Human pluripotent stem cell-derived brain tumor model uncovered embryonic stem cell signature as a key driver in atypical teratoid/rhabdoid tumor (RNA-Seq) 2.7
Deep sequencing of transcript levels in pluripotent stem cells and their differentiated derivatives in all three germ layers 2.7
Generating Patterned Kidney Organoids for Studying Development and Diseases [bulk RNA-Seq] 2.65
RNA-Sequencing approach for the identification of novel long non-coding RNA biomarkers in colorectal cancer 2.65
Depicting early human development and germ cell origin with porcine embryos 2.55
RNA-seq and small RNA-seq analysis of BORIS/CTCFL knockdown in K562 cell line 2.55
RNA-seq analysis of BORIS/CTCFL knockdown in K562 cell line 2.55
DIGIT regulates endoderm differentiation of human embryonic stem cells 2.54
Brain organoids reproducibly generate the cellular diversity of the human cerebral cortex 2.49
RNA sequencing of hPSC-derived cardiac progenitors and endocardium 2.47
RNA-Seq analysis of human colorectal cancer with liver metastasis 2.46
Pseudouridylation of tRNA-derived fragments steers translation control in stem cells [Polysome-Seq] 2.44
The global transcriptome analysis in the time course of hESC-derived cardiac differentiation 2.43
Molecular Biomarkers Screened by Next-generation RNA Sequencing for non-sentinel lymph node status predicting in breast cancer patients with metastatic sentinel lymph node 2.41
LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression 2.41
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation 2.33
Patient Derived Xenograft for Delivery of Precision Medicine in Castrate Resistant Prostate Cancer 2.27
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq] 2.26
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity 2.18
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin 2.18
Diarrhoeal mechanisms of the Campylobacter jejuni enteritis 2.09
‘Naïve’ ESRRB+ iPSCs with the capacity for rapid neural differentiation 2.07
Potential signaling pathways and gene signatures associated with brain metastases in NSCLC patients 2.07
Genome-wide transcriptome analysis of NIPBL iPSC and commited cardiomyoctes 1.98
Improved LCL to iPSC reprogramming: RNA Analysis of LCLs, reprogrammed iPSCs, and differentiated NSCs reveal potential regulatory and functional processes involved in these cellular transitions. 1.97
Pharmacological Induction of a Progenitor State for the Efficient Expansion of Primary Human Hepatocytes 1.96
Single-cell RNA sequencing-based CRISPRi screening resolves molecular drivers of early human endoderm development 1.92
The WNT target SP5 negatively regulates WNT transcriptional programs in human pluripotent stem cells 1.9
SLAM-seq for K562 endogenous mRNA decay 1.86
The comparison of high-throughput single-cell RNA-seq methods 1.84
Transcriptomic Dynamics during Differentiation Process of Human Pluripotent Cells into Hepatocyte-like Cells 1.76
Generation of targeted homozygosity in the genome of human induced pluripotent stem cells 1.74
Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells 1.72
Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells [ChIP-Seq & RNA-Seq] 1.72
Mechanistic Model-Guided Study of Embryonic Morphogenesis 1.71
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of H1, H1 derived APLNR+ cells, CD31+CD34+ cells and CD43+ cells during human early hematopoietic differentiation 1.7
Dissecting neural differentiation regulatory networks through epigenetic footprinting 1.67
Postnatal lipids drive hepatocyte maturation 1.66
Endometrial transcriptome and PGR cistrome in cycling fertile women [RNA-seq] 1.65
Endometrial transcriptome and PGR cistrome in cycling fertile women 1.65
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition 1.62
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [RNA-Seq] 1.62
The effect of spontaneous acquisition of an extra chromosome 7 for engineered del(7q) on induced pluripotent stem cells (iPSCs) derived from patients with Shwachman Diamond Syndrome (SDS). 1.62
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation [RNA-Seq rescue_SS] 1.6
Cleavage Factor Im as a key regulator of 3’ UTR length 1.57
Identification of monocyte-like precursors of granulocytes as a mechanism for accumulation of PMN-MDSC in cancer 1.57
HNF1A deficiency impairs β-cell fate, granule maturation and function 1.52
Gene expression profiles of tumor-infiltrating CD8 T cells in hepatocellular carcinoma 1.52
Regulation of cellular heterogeneity and rates of symmetric and asymmetric divisions in triple-negative breast cancer 1.48
Transcriptomic analysis of iPSC and ESC challenged with atmospheric or physiological oxygen 1.48
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq Human] 1.47
Connexin 32-mediated cell-cell communication is essential for hepatic differentiation from human embryonic stem cells 1.46
Time series total RNA sequencing of a differentiation of human embryonic stem cells towards trophoblast lineage 1.42
ABCB5 is activated by MITF and b-catenin and is associated with melanoma differentiation 1.41
Identification of PAX7-induced transcriptional changes and PAX7 genomic binding during skeletal myogenic differentiation of H9 embryonic stem cells 1.4
The control of rRNA synthesis during the directed differentiation of human embryonic stem cells precedes heterochromatin formation. 1.39
SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate 1.37
The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition 1.35
Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular 1.34
RNA Seq analysis of NKX2-5 Null and Het human embryonic stem cells in cardiomyogenesis 1.28
GIST cell cycle dysregulation is required for progression to high-risk disease but not for resistance to kinase inhibitors 1.25
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation [RNA-Seq SS] 1.25
Robust generation of honemogeneous midbrain organoids with in vivo–like cellular composition facilitates neurotoxin-based Parkinson’s disease modeling 1.24
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of H1 and H1 after SNAI1 deletion at Day2 after human early hematopoietic differentiation . 1.22
Hematopoietic Stem and Progenitor Cells from Human Pluripotent Stem Cells via Transcription Factor Conversion of Hemogenic Endothelium 1.21
Similarity of therapeutic networks induced by a multi-component herbal remedy in neurovascular unit cells 1.21
Cell cycle positioning drives heterogeneity within the pluripotent stem cell compartment 1.16
Epigenomic conservation of transposable element silencing 1.15
Epigenomic conservation of transposable element silencing [RNA-seq] 1.15
RNA-seq, ChIP-seq and single cell RNA-seq of human skin Langerhans cells 1.14
Recurrent alterations of TNFAIP3 (A20) in T-cell large granular lymphocytic leukemia 1.13
Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels 1.12
Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels [RNA-Seq] 1.12
Human embryonic stem cell, chimpanzee induced pluripotent stem cell, orangutan induced pluripotent stem cell, rhesus embryonic stem cell, and their derived cortical organoid RNA-seq 1.11
Human germ cell formation in xenotransplants of induced pluripotent stem cells carrying X chromosome aneuploidies 1.1
RNA sequencing analysis of human embryonic stem cells and axial progenitors 1.09
Oncogenic Serine-Threonine Kinase Receptor Associated Protein Supports Hepatocellular Carcinoma Cell Growth by Enhancing Wnt/β-catenin Signaling 1.06
Innate-like activation of mucosal-associated invariant T cells in mycobacterial infection 1.05
Genome-scale screens identify JNK/JUN signaling as a barrier for pluripotency exit and endoderm differentiation 1.05
C9/ALS Human Embryonic Stem Cells and C9/ALS Induced Pluripotent Stem Cells 1.03
Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination 1.02
CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression (3' RNA) 1.02
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons 1.0
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons [RNA-Seq] 1.0
Transcriptome analysis of human embryonic stem cells (hESCs) upon siRNA-mediated knockdown of hESC-essential genes 0.99
The SS18-SSX fusion oncoprotein hijacks BAF complex targeting and function to drive synovial sarcoma [RNA-Seq Tumor] 0.98
Characterization of EZH2-deficient human embryonic stem cells [ChIP-seq and bulk RNA-seq] 0.98
Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration [RNA-seq2] 0.97
Sequencing of messenger RNAs with N6-methyladenosine modifications in acute myeloid leukemia (AML) with and without forced expression of FTO 0.97
Human embryonic stem cells in E8 and AKIT culture medium 0.94
Growth factor-free, chemically-defined culture system for expansion and derivation of human pluripotent stem cells 0.94
LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs 0.94
Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells 0.93
Identification of transcripts altered upon LIN-41 knockdown in human embryonic stem cells 0.93
HDAC inhibition enhances the in vivo efficacy of MEK inhibitor therapy in uveal melanoma 0.89
High-depth RNA sequencing of isogenic wild-type, PIK3CA-WT/H1047R and PIK3CA-H1047R/H1047R human iPSCs 0.87
Early response of human ovarian and fallopian tube surface epithelial cells to norepinephrine 0.87
Human naïve pluripotent stem cells exhibit X chromosome dampening and X-inactivation (RNA-Seq) 0.85
Poly(A)-specific ribonuclease (PARN) mediates 3' end maturation of the telomerase RNA component 0.85
Non-transmissible measles virus vector with segmented RNA genome establishes different types of iPSCs from hematopoietic cells 0.83
Transcriptome profiling of self-renewing hESCs and multipotent mesoderm progenitor cells as a function of substrate stiffness 0.83
Transcriptional regulation in pluripotent stem cells by Methyl CpG binding protein 2 (MeCP2) 0.83
In vitro differentiation of human embryonic stem cells into ovarian follicle-like cells 0.81
Global gene expression profiles of cardiac progenitors differentiated from human pluripotent stem cells in 3D culture under simulated microgravity 0.8
Generating Patterned Kidney Organoids for Studying Development and Diseases 0.8
U2AF1 mutations alter splice site recognition in hematological malignancies 0.8
CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression 0.78
LncPRESS1 is a p53-regulated lncRNA that safeguards pluripotency by disrupting SIRT6 mediated de-acetylation of histone H3K56 0.77
A transcriptional regulatory network connects mitochondrial biogenesis and metabolic shift with stem cell commitment to hepatic differentiation 0.77
MEIS1 regulates hematopoiesis in hPSCs 0.77
Identification of altered developmental pathways in human juvenile HD iPSC with 71Q and 109Q using transcriptome profiling 0.77
The mRNA export receptor NXF1 coordinates transcriptional dynamics, alternative polyadenylation and mRNA export 0.75
Integrin αvβ3 acting as membrane receptor for thyroid hormones mediates angiogenesis in malignant T cells 0.74
Effect of Ro 08-2750 treatment on gene expression of human leukemia cell lines MOLM13 and K562 0.74
SMUG1 promotes telomere maintenance through telomerase RNA end-processing 0.73
Transcriptome profile of ATP7B KO cells and WT cells treated with Copper (Cu) to study Autophagy as a pro-survival mechanism in Wilson disease 0.73
Tyrosine Kinase Inhibitor Cardiotoxicity 0.73
High-Throughput Screening of Human Induced Pluripotent Stem Cell Cardiomyocytes Predicts Tyrosine Kinase Inhibitor Cardiotoxicity 0.73
Integrated Profiling of mRNAs and microRNAs to Identify Potential Biomarkers for Oral Malignant Transformation 0.72
Integrated Profiling of mRNAs and microRNAs to Identify Potential Biomarkers for Oral Malignant Transformation [mRNA-Seq] 0.72
Mutant p63 disrupts the key specification switch from the multipotent cell state to stratified epithelia during epithelial differentiation/in ectodermal dysplasia disorders 0.71
Improving fibroblast characterization using single-cell RNA sequencing: an optimized tissue disaggregation and data processing pipeline 0.7
A global identification of PUM1 and PUM2 mRNA targets and their protein cofactors in human seminoma TCam-2 cells 0.69
Differential gene expression profiles in imatinib-resistant cell lines 0.67
Expression profiles of the four human major ectodermal lineages 0.67
CD13 and ROR2 permit isolation of highly enriched cardiac mesoderm from differentiating human embryonic stem cells 0.67
Isolation of highly enriched cardiac mesoderm from differentiating human embryonic stem cells 0.67
DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq] 0.66
Microvesicle-mediated delivery of miR-1343: impact on markers of fibrosis 0.66
Functional Haploid Human Oocytes Generated from Polar Body Genomes (RNA-Seq) 0.65
Functional Haploid Human Oocytes Generated from Polar Body Genomes 0.65
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 1] 0.65
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells [RNA-seq] 0.65
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells 0.65
UV-Irradiation Induces a Noncoding RNA that Functionally Opposes the Protein Encoded by the Same Gene 0.64
Induced pluripotent stem cell modeling of bone marrow failure and MDS identifies therapeutic targets 0.64
Analysis of regulatory element evolution between human and mouse reveals a lack of cis-trans compensation 0.64
RNA sequencing of hiPSC derived neural crest populations from Familial Dysautonomia patients 0.63
Smad5 acts as an intracellular pH messenger and maintains bioenergetic homoeostasis 0.63
3’READS+, a sensitive and accurate method for 3’ end sequencing of polyadenylated RNA 0.63
Probing the Global Cellular Responses to Lipotoxicity Caused by Saturated Fatty Acids 0.62
Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes 0.61
Transcriptomic profiling of sequential tumours from breast cancer patients provides a global view of metastatic expression changes following endocrine therapy 0.61
Vitamin C dependent KDM6 demethylation specifies a functional chromatin state for endothelial-to-hematopoietic transition [RNA-Seq] 0.59
Vitamin C–dependent lysine demethylase 6 (KDM6)-mediated demethylation promotes a chromatin state that supports the endothelial-to-hematopoietic transition 0.59
Comparative Transcriptome analysis of hESCs- and iPSCs-derived lentoid body 0.59
Transcriptome analysis reveals determinant stages controlling human embryonic stem cell commitment to neuronal cells 0.58
RNA-seq analysis of hPSC-derived brain pericyte-like cells, hPSC-derived neural crest stem cells, and primary human brain pericytes 0.58
Human co-transcriptional splicing kinetics and coordination revealed by direct nascent RNA sequencing 0.57
Capturing the biology of mild versus severe disease in a pluripotent stem cell-based model of Familial Dysautonomia 0.57
The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks 0.56
Identification of mRNAs with reduced ribosomal loading upon knock-down of translation factor DAP5 from hESCs. 0.55
A pooled single-cell genetic screen identifies regulatory barriers in the continuum of the epithelial-to-mesenchymal transition 0.54
Genome-wide profiling of cervical RNA-binding proteins identified HPV regulation of RNASEH2A expression by viral E7 and E2F1 0.53
A common cell state in Triple Negative Breast Cancers represents a druggable vulnerability 0.52
Single-cell Transcriptomic Atlas of the Human Retina Identifies Cell Types Associated with Age-Related Macular Degeneration [Microfluidics] 0.52
Genome expression analysis of Lung Progenitors matured in the presence of constitutively active or pharmacologically inhibited Glycogen Synthase Kinase 3 0.52
Changes in chromatin accessibility and gene expression induced by overexpression of ONECUT transcription factors 0.52
Profiling of gene expression using RNA-Seq in fibroblasts, iPSCs, iPSC-derived neurons and cells overexpressing Onecut transcription factors 0.52
Comparative gene expression profiling of human primary endotheliocytes cultivated on polyurethane-based electrospun 3D matrices and natural decellularized vein 0.52
Mutant p53 controls tumor metabolism and metastasis by regulating PGC-1α 0.51
Epigenome regulation during epidermal lineage commitment 0.5
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules 0.5
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [gene expression] 0.5
Sex-specific gene expression differences are evident in human embryonic stem cells and during in vitro differentiation of human placental progenitor cells 0.5
Spliceosomal disruption of the non-canonical BAF complex in cancer 0.5
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo 0.49
Cell-to-cell variation in defective virus expression and effect on host response during influenza virus infection 0.49
Transcriptional dependencies in diffuse intrinsic pontine glioma 0.49
Accurate annotation of human protein-coding small open reading frames 0.48
Radiomic and gEnomic approaches for the enhanced DIagnosis of REnal Cancer (REDIRECt): A translational pilot study 0.47
Genetic Tagging During Human Mesoderm Differentiation Reveals Tripotent Lateral Plate Mesodermal Progenitors 0.47
RNA-sequencing with micro-dissected boundary organoid into anterior, posterior, and boundary regions 0.46
RNA-Seq comparative analysis of human neuroblastoma cells before and after their confrontation to the embryonic microenvironment 0.46
Essential Roles of SETD7 as Transcriptional Activator and Co-regulator of H3K36me in Cardiac Lineage Commitment 0.45
HEXIM1 is induced by DHODH inhibition to suppress melanoma [Gro-Seq] 0.45
HEXIM1 is induced by DHODH inhibition to suppress melanoma 0.45
Gene expression changes caused by KRAS in MCF-10A 0.44
Wide-scale analysis of alternative polyadenylation (APA) associated with proliferation and transformation using 3'-Seq 0.44
AMPK signaling for naïve pluripotency 0.44
AMPK signaling for naïve pluripotency [Hs] 0.44
SRSF2 mutations impair hematopoiesis and alter exon recognition 0.44
Codon usage optimization in pluripotent embryonic stem cells [RNA-seq] 0.44
An atlas of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2 0.43
A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation 0.43
Single-cell analysis of adult human ovary using 10X genomics 0.42
Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses 0.41
An optimization system for isolating and sequencing of single human colon cancer cells 0.41
Transcriptional landscape changes during human embryonic stem cell derivation 0.4
Global transcriptome analysis of WT versus HEB-/- hESCs 0.39
hESC neural differentiation 0.39
RNA-seq analysis of gene expression patterns during hESC neural differentiation 0.39
WNK1 kinase and the termination factor PCF11 connect nuclear mRNA export with transcription 0.38
Activin/Smad2-induced H3K27me3 reduction is crucial to initiate mesendoderm differentiation of ES Cells 0.38
Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing 0.38
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis [Quant-Seq] 0.37
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis 0.37
A cell-permeable stapled peptide inhibitor of the estrogen receptor/coactivator interaction 0.35
COMBINING BET AND MEK INHIBITORS SYNERGISTICALLY TARGETS NRAS MUTANT MELANOMA 0.35
Identification of long noncoding RNAs in T-ALL cell lines 0.35
Gene expression and chromatin organization changes in lamin A/C haploinsufficient human induced pluripotent stem cell-derived cardiomyocytes 0.35
Gene expression and chromatin organization changes in lamin A/C haploinsufficient human induced pluripotent stem cell-derived cardiomyocytes [RNA-seq] 0.35
Quantitative analysis of bi-modal binding of BET proteins at promoters predicts I-BET sensitivity 0.34
POLR3G Dependent PolyA+ and smallRNA Transcriptomes in Human Pluripotent Stem Cells 0.34
Identification of epigenetic interactions between miRNA and DNA methylation associated with polycystic ovarian syndrome 0.34
Transcriptome Profiling Reveals the key genes and pathways involved in polycystic ovary syndrome [RNA-seq] 0.34
Functional Cardiac Fibroblasts Derived from Human Pluripotent Stem Cells via Second Heart Field Progenitors 0.34
Microglia innatly develop within cerebral organoids 0.33
Gene expressions of H9s in different culture systems 0.32
RNA-Sequencing of human dermal lymphatic endothelial cells (HDLEC) treated with siRNA targeting YAP/TAZ and YAP5SA 0.32
Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor 0.32
AKT Inhibition Promotes Non-autonomous Cancer Cell Survival [RNA-Seq] 0.32
AKT Inhibition Promotes Non-autonomous Cancer Cell Survival 0.32
Generation and persistence of human tissue-resident memory T cells in lung transplantation 0.32
Expression data for KDM1B knockdown in Glioma-Initiating Cells (GICs) 0.31
Intrinsic histone acetyltransferase activity of BRD4 is responsible for nucleosome eviction and transcriptional activation 0.31
TLR2 dimerization blockade allows generation of homeostatic intestinal macrophages under acute colitis challenge 0.31
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (RNA-Seq) 0.3
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation 0.3
Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis [RNA-Seq] 0.3
Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis 0.3
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency 0.29
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency (RNA-Seq) 0.29
PolyA-sequencing in IMR-32 cells treated with THZ531 or DMSO 0.29
A specific missense mutation in GTF2I occurs at high frequency in thymic epithelial tumors 0.29
Comparative whole-transcriptomic analysis between normal and AKAP-Lbc-depleted human embryonic stem cells 0.27
The Glioma-Infiltrating T Cell Receptor Repertoire 0.27
PolyA-sequencing in Kelly and Kelly E9R neuroblastoma cells treated with THZ531 or DMSO 0.27
Functional genomic analysis of the haploinsufficient tumor suppressor, CUX1 0.27
Comparative analysis of kidney organoid and adult human kidney single cell and single nucleus transcriptomes 0.27
Gene expression profiles of PD1-high, PD1-intermediate, and PD1-negative tumor-infiltrating CD8 T cells in hepatocellular carcinoma 0.27
Single-cell transcriptome of human epithelial cells reveals novel insights into early innate immune responses to influenza virus and viral antagonism 0.26
Transcriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development [RNA-Seq] 0.26
Transcriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development 0.26
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data 0.26
LncRNA-dependent mechanisms of androgen receptor-regulated gene activation programs [GRO-seq II] 0.26
Sodium butyrate ameliorates aSyn-induced transcription deregulation and DNA damage 0.26
Gene expression analysis of ER+ and ER- breast cancer cell lines with acquired resistance to palbociclib 0.26
Molecular Criteria for Defining the Naive Human Pluripotent State 0.25
Repurposing of promoters and enhancers during mammalian evolution 0.25
Gene expression profiling in metabolically heterogeneous human lung tumors 0.25
RNA Seq of Alagille liver biopsies 0.25
Alagille_Nodder 0.25
Transcriptional profile in human S. haematobium infection 0.23
RNA profiling Analysis of the Serum Exosomes Derived from Active and Latent M.tuberculosis infectious Patients 0.23
BET-Bromodomain Inhibitors Engage The Host Immune System And Regulate Expression Of The Immune Checkpoint Ligand PD-L1 0.22
BET-Bromodomain Inhibitors Engage The Host Immune System And Regulate Expression Of The Immune Checkpoint Ligand PD-L1 [3mRNA-seq] 0.22
Comparative gene expression profiling of MHH-CALL4 cells subject to pharmacological JAK2 inhibitor treatment (ruxolitinib or CHZ868) or shRNA-mediated JAK2 depletion in vitro 0.22
JAK2 is dispensable for maintenance of JAK2 mutant B-cell acute lymphoblastic leukemias 0.22
BCL11B 0.22
Antiviral and anti-inflammatory properties of novel anti-HIV candidate ABX464 promotes specifics RNA splicing while preserving cellular RNA integrity. 0.21
Post-transcriptional manipulation of TERC reverses molecular hallmarks of telomere disease 0.21
Non-inflammatory tumor microenvironment of Diffuse Intrinsic Pontine Glioma (DIPG) 0.21
RNA-Seq of CD4+ T cells treated with AS1842856 or DMSO 0.21
Transcriptome analysis of human immortilized astrocytes reprogrammed into dopaminergic neurons 0.21
Single-cell analysis of human kidney organoids 0.21
Effect of BMP inhibition or stimulation of primary human keratinocytes 0.21
Single-cell ID-seq identifies BMP signaling as a driver of a late stage epidermal differentiation program. 0.21
Single-cell Transcriptomics reveals multi-step adaptations to endocrine therapy 0.2
K562 polyA RNA-Seq 0.19
Tristetraprolin disables prostate cancer maintenance by impairing proliferation and metabolic function 0.19
Treatment of SW480 colon cancer cell induced xenografts with AZD and DBZ 0.19
Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes 0.18
RNA-seq of naive and primed ES cells 0.18
Transcriptome data from human endocrine cells recovered from mouse grafts with pre-engraftment controls 0.17
Prediction of bacterial infection outcome using single cell RNA-seq analysis of human immune cells [sorted population Bulk RNA-seq] 0.16
Functional and genomic characterization of a xenograft model system for the study of metastasis in triple-negative breast cancer. 0.16
Metastasis in triple-negative breast cancer 0.16
Gene-Edited Human Kidney Organoids Reveal Mechanisms of Disease in Podocyte Development 0.16
CpG dinucleotides introduced into gag can inhibit HIV-1 gene expression by modulating pre-mRNA splicing 0.16
Transcriptomic profile of intestinal epithelial cells obtained from ileal endoscopic biopsies from newly-diagnosed, pediatric Crohn's disease patients and healthy controls. 0.15
Transcriptome analysis in a radiosensitive and a radioresistant cell line after ionizing radiation 0.15
A robust qualitative transcriptional signature for the early diagnosis of gastric cancer 0.15
Self-associated molecular patterns mediate cancer immune evasion by engagement of Siglec receptors 0.14
Critical role for Lymphocytes in Producing FLT3LG in Tumors and Driving Checkpoint Therapy-Receptive Immune Microenvironments 0.14
RNA-seq analysis reveals profound changes in transcript profiles between siCon- and siH19-transfected uterine smooth muscle cells (USMC) 0.14
Nudt3 is a mRNA Decapping Enzyme That Modulates Cell Migration 0.13
Total RNA-Seq data from leukemic patients with complex structural variants 0.13
RNA-seq of exosomes identifies lncRNA profiles that distinguish early-stage esophageal squamous cell carcinoma (ESCC) from non-malignant esophagitis 0.13
Transcriptome analysis of fetal Klinefelter testis tissue samples compared to controls 0.13
Transcriptome sequencing of K-562 cells 0.12
Effect of estrogen (E2) treatment on the C4-12 relative to the MCF7 cells 0.12
Reprogramming of Tumor-infiltrating Immune Cells in Early Stage of NSCLC 0.12
Pseudotime Ordering of Single Human Beta-Cells Reveals States of Insulin Production and Unfolded Protein Response 0.11
Expression analysis of the TAF1 syndrome 0.11
Gene expression profiling of human iPS cell-derived podocytes and sorted human adult podocytes 0.1
HEK293 Heat-shock experiment 0.09
Tracing the temporal-spatial transcriptomic landscapes of the human fetal digestive tract by single cell RNA-seq analysis [adult tissues] 0.09
Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq 0.09
Profiling gene expression changes in primary ovarian tumors compared to matched normal fallopian tubes 0.08
RNAseq of Extracellular vesicle RNAs and cellular RNAs from HPASMCs with or without TGF-b1 or BMP4 treatment 0.08
Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq 0.08
Gene expression profiles of 4-1BB+PD-1-high, 4-1BB-PD-1-high, and PD-1-int tumor-infiltrating CD8 T cells in hepatocellular carcinoma 0.08
Studying the selectivity of a targeted small molecule degrading a hypoxia-associated non-coding RNA 0.07
UV_24h_GRO-Seq 0.07
Wnt addiction of genetically defined cancers reversed by PORCN inhibition 0.07
Transcriptome analyses of iPSC-derived neural stem/progenitor cells and cerebral organoids from monozygotic twins discordant for schizoaffective bipolar disorder 0.07
PolyA-sequencing in IMR-32 neuroblastoma cells with shRNA mediated depletion of CDK12, CDK13 or GFP. 0.07
TNFα Signaling Exposes Latent Estrogen Receptor Binding Sites in Breast Cancer Cells 0.06
TNFα Signaling Exposes Latent Estrogen Receptor Binding Sites in Breast Cancer Cells [GRO-seq] 0.06
The Chromatin-Looping Factor ZNF143 Engages at Looping Promoters to Favor the Estrogen Response in Breast Cancer (RNA-seq) 0.06
The Chromatin-Looping Factor ZNF143 Engages at Looping Promoters to Favor the Estrogen Response in Breast Cancer 0.06
EWS-Fli and LNC regulated genes in comparison to GFP samples 0.05
Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration 0.05
MicroRNA-125a-5p overexpression in human macrophages 0.05
Next Generation Sequencing Facilitates Quantitative Analysis of miR-29b-1 and miR-29a targets in tamoxifen-sensitive and tamoxifen-resistant human breast cancer cells 0.05
Transcriptomic profiling of human coronary artery endothelial cells under laminar shear stress (LS), oscillatory shear stress (OS) and static culture (ST) 0.05
Next generation sequencing of advanced non-castrate prostate cancer treated with docetaxel chemotherapy 0.05
Measure transcript integrity using RNA-seq data 0.05
RNA sequencing of prostate cancer and normal tissue from African Americans and European Americans 0.04
Identifying transcripts that are transcriptinoally regulated by CBFB and RUNX1 using RNAseq 0.04
Maternal-biased H3K27me3 correlates with paternal-specific gene expression in the human morula 0.04
A Low-cost Multiplex Biomarker Assay Stratifies Colorectal Cancer Patient Samples into Clinically-relevant Subtypes: Singapore Cohort RNA-seq 0.04
A Low-cost Multiplex Biomarker Assay Stratifies Colorectal Cancer Patient Samples into Clinically-relevant Subtypes 0.04
Comparative Transcriptomic Analysis of Hematopoietic System Across Species by Microwell-Seq 0.03
Primate-specific gene TMEM14B promotes cortical expansion and folding 0.03
Gene expression activation in CLL mediated by MSCs contact 0.03
RNA-seq differential expression studies: more sequence, or more replication? 0.03
Comprehensive comparative analysis of 5’ end RNA sequencing methods 0.03
The Wnt/β-catenin-signaling pathway is modulated by androgen ablation therapy for advanced clinical prostate cancer and contributes to androgen independent cell growth 0.02
Gene expression alterations of pancreatic intraepithlial neoplasia 0.02
An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer 0.02
An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [RNA-Seq] 0.02
Expansion of adult human pancreatic tissue yields organoids harbouring progenitor cells with endocrine differentiation potential 0.02
WNT signaling memory is required for ACTIVIN to function as a morphogen 0.02
CUREfast: Accelerating research with families 0.02
The transcriptome and chromatin accessbility landscape of mammalian germline 0.01
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 0.01
Hepatic transcriptome of pediatric hepatoblastoma. 0.01
mRNA expression profiling in MDA-MB-231 (LM1) cells with a tet-incible MBD2 or p66α knock down, or treated with MBD2-targeting small molecule ABA or APC 0.01
Poly(ADP-ribose) polymerase 1 is necessary for coactivating hypoxia-inducible factor-1-dependent gene expression by Epstein-Barr virus latent membrane protein 1 0.01
Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses 0.0
Single-cell survey of human lymphatics unveils marked endothelial cell heterogeneity and mechanisms of homing for neutrophils 0.0
Single-Cell Transcriptome Analysis of Lineage Diversity and Microenvironment in High-Grade Glioma 0.0
Genome-wide mapping of TEL-AML1 targets in acute leukemia 0.0


Contact Us

For scientific and technical queries contact Butte Lab @UCSF


Cite GENEVA Tool

Manuscript in Preparation