Gene Query: HOXA1

Dataset Description Geneva Score
RNA sequencing analysis of human embryonic stem cells and axial progenitors 80.39
A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons 46.14
A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons [RNA-seq] 46.14
RNA-Seq profiling of day 7 and day 18 kidney organoids differentiated in two batches 45.65
Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases 34.88
Lineage specific differentiation is influenced by state of human pluripotency [RNA-seq] 32.96
Lineage specific differentiation is influenced by state of human pluripotency 32.96
FUS mutant human motoneurons transcriptome analysis reveals altered pathways and impairment of microRNA function 28.72
Codon usage optimization in pluripotent embryonic stem cells [RNA-seq] 27.22
Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells 22.58
Crizotinib v. DMSO in SW480 cells 20.71
Expression profiling by high throughput sequencing of tumors derived from human prostate epithelial cells transformed with the oncogenes N-Myc and myrAKT1. 18.59
The role of TFEB in retinoid induced differentiation of NB4 APL leukemic cells (shTFEB) 18.14
LncPRESS1 is a p53-regulated lncRNA that safeguards pluripotency by disrupting SIRT6 mediated de-acetylation of histone H3K56 17.04
Quantitative comparison between cellular mRNAs and exosomal mRNAs in human iPSC-derived motor neurons 15.74
Post-transcriptional remodelling is temporally deregulated during motor neurogenesis in human ALS models 15.32
Transcriptome analysis of PRMT6 knock-out in NT2/D1 cells 15.21
Genomic location of PRMT6-dependent H3R2 methylation is decisive for the transcriptional outcome of associated genes 15.21
Discovery of a Drug Candidate for GLIS3-Associated Diabetes 14.62
Differentially expressed genes during pancreatic bud differentiation in cellular aggregates 13.69
List of TIAM1 differentially expressed genes in SW620 cells [RNA-seq] 11.79
The inhibitory effect of TIAM1 on TAZ transcriptional activity and TIAM1 differentially expressed genes 11.79
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 2] 11.26
RNA-Seq in SMARCD2 k/d NB4 cells with/without ATRA differentiation 10.07
RNA-Seq and ATAC-Seq in SMARCD2 k/d NB4 cells with/without ATRA differentiation 10.07
Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq 8.73
Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 8.73
RNA-Seq from early time points in the kidney differentiation protocol 8.32
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency 7.9
Propargite, an environmental chemical, interacts with GWAS identified diabetes genes to impact human pancreatic β-cell death 7.84
Glutaminolysis is a metabolic dependency in FLT3 ITD Acute Myeloid Leukemia unmasked by FLT3 Tyrosine Kinase Inhibition 7.31
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells 6.9
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells [Endoderm RNA-seq and ChIP-seq data sets] 6.9
RNA-seq of naive and primed ES cells (NHSM) 6.26
Human iPSC-derived cells and microengineered Organ-Chip enhance neural development. 6.21
Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [RNA-Seq III] 5.71
Next Generation Sequencing Analysis of human embryonic stem cells derived MESP1-mTomato reporter cells 5.39
Depicting early human development and germ cell origin with porcine embryos 5.06
Rescue of Fragile X syndrome neurons by DNA methylation editing of the FMR1 gene [RNA-seq] 4.97
Rescue of Fragile X syndrome by DNA methylation editing of the FMR1 4.97
Transcriptional profile of CAOV2 ovarian cancer cells with TAZ silencing 4.51
Locally transplanted human urine-induced nephron progenitor cells contribute to renal repair in mice kidney with diabetic nephropathy 4.46
TNF response in promyelocytic and granulocytic forms of HL60/S4 cells 4.3
The landscape of alternative splicing in aggressive prostate cancers 3.83
Generating Patterned Kidney Organoids for Studying Development and Diseases 3.62
Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq 3.51
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 [RNA-seq] 3.43
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 3.43
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 1] 3.43
Bach1 Regulates the Self-renewal and Mesendodermal Differentiation of Human Embryonic Stem Cells 3.2
Time series single-cell transcriptomic analysis of AEC2 directed differentiation 3.1
Characterization and therapeautic application of mesenchymal stem cells with neuromesodermal origin from human pluripotent stem cells 3.02
Global expression profiles in cardiac progenitor cells generated by ISX-9 3.01
Global mRNA expression profile in cardiac progenitor cells generated by ISX-9 3.01
m6A-seq data analysis of control and PCIF1 knockdown transcriptome 2.86
In vitro differentiation of human embryonic stem cells into ovarian follicle-like cells 2.84
HOXC6 affects the malignant phenotype of esophageal squamous cell carcinoma cells 2.78
Codon usage optimization in pluripotent embryonic stem cells [tRNA sequencing] 2.73
RNA-Seq profiling of days 0, 7 and 18 kidney organoids differentiated from three separate vials of starting material 2.64
Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing 2.61
Lysine benzoylation is a novel histone mark [RNA-seq] 2.5
Lysine benzoylation is a novel histone mark 2.5
Disease modelling of core pre-mRNA splicing factor haploinsufficiency 2.29
Mutant p63 disrupts the key specification switch from the multipotent cell state to stratified epithelia during epithelial differentiation/in ectodermal dysplasia disorders 2.29
Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia 2.27
Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia (RNA-seq) 2.27
yylncT acts as a gatekeeper of the mesodermal transcriptional program by local modulation of DNMT3B [human_2] 2.25
Genome-wide Gene Expression Profiling in DLBCL Cell Lines Treated with CUDC-907 2.24
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation 2.18
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (RNA-Seq) 2.18
The comparison of high-throughput single-cell RNA-seq methods 2.17
The regulation of ferroptosis by TAZ in epithelial ovarian cancer 2.02
SUV420H2 knockdown in PANC-1 1.98
Genome wide association study of bone size yields eleven loci that also affect height, bone density, osteoarthritis and fractures 1.94
Major roles of cyclobutane pyrimidine dimers, nucleotide excision repair and ATR in the alternative splicing response to UV irradiation 1.86
Transcriptional landscape changes during human embryonic stem cell derivation 1.75
Temporal activation of NR5A2 and RARγ induce functional human naïve pluripotent state via modulating TGFβ pathway 1.74
Poly(A)-ClickSeq resolves CF25-mediated alternative poly-adenylation, HeLa 1.74
A global identification of PUM1 and PUM2 mRNA targets and their protein cofactors in human seminoma TCam-2 cells 1.73
Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor 1.64
CHCHD10 gene KO effect in iPSC drived motor neurons 1.63
MOV10 Is a 5' to 3' RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3'UTRs (expression) 1.53
MOV10 Is a 5' to 3' RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3'UTRs 1.53
Multiple waves of transcriptome changes during extended hypoxic induction in human pulmonary microvascular endothelial cells 1.53
Transcriptome analysis of H9 hESC derived cerebral organoids 1.46
Engineering Patient-Specific Tissue Implants 1.46
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis 1.43
Meta-organization of Translation Centers Revealed by Proximity Mapping of Endoplasmic Reticulum Ribosome Interactors 1.41
Differential RNA-seq analysis comparing APC-defective and APC-restored SW480 colorectal cancer cells 1.37
Effects of NSUN2 deficiency on the mRNA 5-methylcytosine modification and gene expression profile in HEK293 cells (RNA-Seq) 1.35
Biased Expression of the FOXP3Δ3 Isoform in Aggressive Bladder Cancer Mediates Differentiation and Cisplatin Chemotherapy Resistance 1.32
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors 1.32
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors [RNA-Seq] 1.32
RNA seq data of Hep3B-control, Hep3B-sertraline, Hep3B-XL413, Hep3B-XL413-sertraline, Huh7-control, Huh7-sertraline, Huh7-XL413, Huh7-XL413-sertraline cells 1.31
Self-organization of polarized cerebellar plate neuroepithelium in three-dimensional culture of human pluripotent stem cells 1.3
Induction of human regulatory innate lymphoid cells from group 2 innate lymphoid cells by retinoic acid 1.29
High-Throughput Drug Screening identifies Pazopanib and Clofilium tosylate as effective treatments for malignant rhabdoid tumors 1.29
CHCHD2 gene KO effect in iPSC drived motor neurons 1.27
Functional interactions between Mi-2β and AP1 complexes control response and recovery from barrier disruption 1.25
Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization  1.24
Regulation of mRNA half-life by an inhibitor of human decapping enzyme Dcp2 following transcription shutoff in HEK293T cells 1.23
Generating Patterned Kidney Organoids for Studying Development and Diseases [bulk RNA-Seq] 1.22
ChIP-seq and RNA-seq from human lymphoma cell lines 1.19
RNA-seq data from human lymphoma cell lines 1.19
SMUG1 promotes telomere maintenance through telomerase RNA end-processing 1.18
Altering cancer transcriptomes using epigenomic inhibitors 1.14
Altering cancer transcriptomes using epigenomic inhibitors [RNA-Seq] 1.14
A TGFbeta-PRMT5-MEP50 Axis Regulates Cancer Cell Invasion through Histone H3 and H4 Arginine Methylation Coupled Transcriptional Activation and Repression 1.14
Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics 1.11
The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition 1.1
Effect of Hypoxia in Severe Preeclampsia through Epigenetic Regulation 1.08
DLX3 alters transcriptomic profile of adhesion, cell cycle, and cell death in Squamous Cell Carcinoma Cells 1.05
DLX3-dependent p53 signaling network controls keratinocyte cell cycle and squamous tumor growth 1.05
Human pluripotent stem cell-derived brain tumor model uncovered embryonic stem cell signature as a key driver in atypical teratoid/rhabdoid tumor (RNA-Seq) 1.03
Effect of CTCF and Rad21 knockdown on SLK cells and KSHV gene expression 1.02
Knockout human reveal an essential role for Paternally Expressed 10 (PEG10) in JEG3 cell line development 1.0
G-quadruplex structures mark human regulatory chromatin 0.99
Generation of targeted homozygosity in the genome of human induced pluripotent stem cells 0.98
A high-throughput screening strategy identifies regulators of alternative splicing via interaction with RNA G-quadruplexes 0.97
Hematopoietic Stem and Progenitor Cells from Human Pluripotent Stem Cells via Transcription Factor Conversion of Hemogenic Endothelium 0.97
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of H1 and H1 after SNAI1 deletion at Day2 after human early hematopoietic differentiation . 0.94
RNA-Seq analysis of cSCC cells followed by siRNA-induced gene knockdown of C1s. 0.92
Maintaining iron homeostasis is the key role of lysosomal acidity for cell proliferation 0.88
Characterization of EZH2-deficient human embryonic stem cells [ChIP-seq and bulk RNA-seq] 0.88
Effect of nuclear IL-33 on gene expression 0.86
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [RNA-Seq_human] 0.86
PHF20 readers link methylation of histone H3K4 and p53 with H4K16 acetylation 0.85
Time-course expression data from HEK293∆RAF1:ER cells stimulated with 4OHT and labelled with 4SU 0.85
Time-course expression data from HEK293∆RAF1:ER cells stimulated with 4OHT, U0126, CYHX, ActD, EGF, FGF, or IGF and labelled with 4SU 0.85
A map of gene expression in neutrophil-like cell lines 0.84
Genome-wide transcriptional profiling of YAP target genes in human endothelial cells 0.83
Co-regulation of splicing by Rbfox1 and hnRNP M [hnRNPM k-d+Rbfox1 RNA-Seq] 0.83
Co-regulation of splicing by Rbfox1 and hnRNP M 0.83
microRNA suppresses prostate cancer stem cells and metastasis by inhibiting a cohort of pro-metastasis targets including CD44, Rho GTPases and EZH2 0.81
Over expression of Receptor Activity Modifying Protein 2 in HEK293T cells 0.81
Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells [ChIP-Seq & RNA-Seq] 0.8
Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells 0.8
Non-transmissible measles virus vector with segmented RNA genome establishes different types of iPSCs from hematopoietic cells 0.79
Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma (RNA-Seq) 0.77
Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma 0.77
Determining mRNA half-lives on a transcriptome-wide scale 0.74
RNA sequencing for PDX1, NGN3 and MAFA transduced iPSCs cell 0.72
TCF7L1 knockdown in pancreatic cancer 0.71
Transcriptome analysis of U87 cells upon LINC00152 knockdown 0.71
Super-enhancer-driven CCAT1 is co-activated by SOX2 and TP63 and promotes squamous cancer from esophagus, head and neck and lung 0.7
Super-enhancer-driven CCAT1 is co-activated by SOX2 and TP63 and promotes squamous cancer from esophagus, head and neck and lung [RNA-seq] 0.7
A549 cell transcriptome responses to infection with H7N9 influenza virus 0.7
Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines 0.69
Molecular Criteria for Defining the Naive Human Pluripotent State 0.67
a-synuclein accumulation in an iPSC derived model of early onset sporadic Parkinson’s Disease reveals novel drug targets 0.66
Small-molecule-based Human Genome G4 Profiling Reveals Potential Gene Regulation Activity 0.66
miR941 overexpression experiment 0.66
CDK12 regulates alternative last exon mRNA splicing and promotes invasion of a breast cancer cell line 0.65
Identifying markers predicting successful graft outcome for clinical translation of hESC-based cell therapy for Parkinson’s disease 0.65
Human germ cell formation in xenotransplants of induced pluripotent stem cells carrying X chromosome aneuploidies 0.64
mRNA-sequencing of 293T-no dice transfected with miR-16, miR-214, or KSHV-miR-K6-5p 0.64
RC3H1 posttranscriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-kB pathway [RNA-Seq] 0.64
RC3H1 posttranscriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-kB pathway 0.64
mRNAseq of Huntington's disease and control patient iPSC-derived brain microvascular endothelial cells 0.63
The SPOP-containing Complex Functions as an E3 Ligase for SETD2 to Regulate Gene-Specific H3K36me3-Coupled Alternative Splicing 0.63
SIX4 acts as a master regulator of genes associated with the malignant phenotype of non-small cell lung cancer cells 0.63
RNA Sequencing of default, melanocyte biased and enteric human neural crest populations (NC) and neuroectoderm (CNS) 0.61
A SIRT1-centered Circuitry Regulates Breast Cancer Stemness and Metastasis 0.6
ChIP-seq and RNA-seq analysis of KMT2D-silenced metastatic melanoma cells 0.6
Acriflavine inhibits the epithelial-to-mesenchymal transition in vitro in liver and pancreatic cancer cells (part of study on PANC1 cells treated with CoCl2) 0.59
Targeted inhibition of STAT/TET1 axis as a potent therapeutic strategy for acute myeloid leukemia 0.59
Evolved Labels of Placental Invasion in Human and Bovine Endometrial Stroma 0.58
Transcriptional profiling of JEG3 cells with HLA-G ablation via deletion of Enhancer L 0.57
Effects of Belinostat and Dexamethasone treatment of A549 gene expression 0.57
RNA-seq of HDAC2-disrupted 293FT cells by CRISPR-Cas9 0.57
Global transcriptional profiling changes upon knockout of USP22 in human Non-small cell lung cancer cells 0.56
The E3 ubiquitin ligase HectD1 suppresses EMT and metastasis by targeting the +TIP protein ACF7 for degradation 0.56
Bromodomain-containing Protein 4 (BRD4) is Required for the Maintenance of a Mammary Epithelial Phenotype 0.55
Bromodomain-containing Protein 4 (BRD4) is Required for the Maintenance of a Mammary Epithelial Phenotype [RNA-Seq] 0.55
Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells [RNA-seq] 0.54
Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells 0.54
Epigenome regulation during epidermal lineage commitment [RNA-seq] 0.53
Whole-Transcriptome Profiling of Canine and Human in Vitro Models Exposed to a G-Quadruplex Binding Small Molecule 0.53
Cleavage Factor Im as a key regulator of 3’ UTR length 0.5
Chromatin-informed inference of transcriptional programs in gynecologic cancers [RNA-Seq] 0.49
Chromatin-informed inference of transcriptional programs in gynecologic cancers 0.49
Transcriptome analysis of ECFCs treated with GSK-343 and Panobinostat 0.49
Integrin signaling regulates YAP/TAZ to control skin homeostasis 0.48
SRSF2 mutations impair hematopoiesis and alter exon recognition 0.48
RNA-Seq of cKIT+ sorted cells from 16-16.5 week old fetal testes and ovaries and RNA-Seq of TRA-1-60+ H1 hESCs 0.48
MKL1 augments megakaryocyte maturation by enhancing the SRF regulatory axis 0.47
MKL1 augments megakaryocyte maturation by enhancing the SRF regulatory axis [RNA-seq] 0.47
Histone deacetylase inhibition enhances antimicrobial peptide but not inflammatory cytokine expression upon bacterial challenge 0.47
Gene expression changes after LOC550643 silencing 0.47
RNA sequencing of lncRNAs knockdown in human pancreatic cancer cell lines 0.46
BAF controls genome accessibility 0.46
Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability [ RNA-seq] 0.46
Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability 0.46
RNA-seq analysis of Retinoic Acid and Non-treated Control hiPSCs 0.45
Global analysis of alternative splicing regulated by RBM10 0.45
Integrated analysis of MLL-AF9 AML patients and model leukemias highlights RET and other novel therapeutic targets (RNA-seq B-ALL) 0.45
Epigenome regulation during epidermal lineage commitment 0.45
Next Generation Sequencing Facilitates Quantitative Analysis of mesoderm posterior bHLH transcription factor 1(MESP1)+ and MESP1- cells' Transcriptomes 0.45
Epigenetic Inactivation of Cysteine Dioxygenase Type 1 Contributes to ROS-dependent Progression of Colorectal Cancer 0.45
IGF2BP3 controls cancer cell invasiveness by modulation RISC function 0.44
Thymine DNA Glycosylase as a novel target for melanoma: effect of TDG silencing on gene expression in SK-mel-28 melanoma cells 0.43
Neural cell adhesion molecule 1 (NCAM1; CD56) promotes leukemogenesis and confers drug resistance in acute myeloid leukemia. 0.43
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [gene expression] 0.43
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules 0.43
Differential Protein Occupancy Profiling of the mRNA Transcriptome 0.43
SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate 0.43
Metastasis in triple negative breast cancer is dependent on ΔNp63/CXCL2/CCL22-mediated recruitment of myeloid-derived suppressor cells 0.42
Early response of human ovarian and fallopian tube surface epithelial cells to norepinephrine 0.41
FMRP-associated MOV10 facilitates and antagonizes miRNA-mediated regulation 0.41
LSD1 mediates AKT activity in PIK3CA mutant colorectal cancer 0.41
LSD1 mediates AKT activity in PIK3CA mutant colorectal cancer [RNA-Seq] 0.41
Transcriptomics analysis of gene expression in normal and METTL3 or WTAP deficient Human HeLa cells 0.41
Targeted reactivation of FMR1 transcription in FXS embryonic stem cells 0.4
TGFβ-induced fibroblast activation requires persistent and targeted HDAC-mediated gene repression 0.4
Transcriptomic Profiling of Developing Human Paraxial Mesoderm from 4.5-5 Weeks of Gestation Human Embryos 0.4
Evidence for HOXC6 as a potential molecular marker for non-small cell lung cancer 0.39
Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function 0.39
Messenger RNA profile analysis deciphers new Esrrb responsive genes in prostate cancer cells 0.39
mRNA-sequencing of U87 glioblastoma and DAOY medulloblastoma spheroidal aggregates undergoing electrotaxis 0.38
Role of COP1 on MAP kinase transcriptional output in gastrointestinal stromal tumor 0.38
Interactome (iCLIP) and Translatome ( Polysome profiling) of Musashi 2 (MSI2) targets in K562 0.38
The cohesin complex prevents Myc-induced replication stress 0.38
Inhibition of the integrin alpha-V beta-3 reverts the paradoxical effect of levothyroxine replacement during bexarotene therapy in cutaneous T-cell lymphoma 0.38
The splicing factor RBM25 controls MYC activity in Acute Myeloid Leukemia 0.38
Overexpression and knockdown experiment for circCSNK1G3 0.37
A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks 0.37
The m 6 A-methylase complex recruits TREX and regulates mRNA export. 0.37
RNA-seq and small RNA-seq from WT and ADAR1 knockdown H9 lines and their differentiation to specific types of neurons 0.37
Impact of dieldrin on transcription in Jurkat T cells 0.37
mRNA and RNC-mRNA deep sequencing of three hepatocellular carcinoma cell lines 0.37
Gene expression profiles of ibrutinib-responsive and ibrutinib non-responsive cells in ERBB4 expressing cancer cell lines 0.36
High throughput characterization of the m6A demethylase FTO by CLIP and RNAseq 0.36
HEK293 TFAM Knockout Expression Study 0.36
The stress granule transcriptome reveals principles of mRNA accumulation in stress granules. 0.35
Deep sequencing of transcript levels of human embryonic stem cell derived mesothelium (epithelial and mesenchymal forms) and mesothelium from neonatal mouse E15.5 of the heart, lung, liver and gut and ChIP-seq data of the mesenchymal form of mesothelium 0.35
Effect of ILF3 on translation during homeostasis and the antiviral response 0.35
MPTAC determines APP fragmentation via sensing sulfur amino acid catabolism 0.34
EZH2 inhibitor efficacy in non-Hodgkin lymphoma does not require suppression of H3K27 mono-methylation [RNA-Seq] 0.34
EZH2 inhibitor efficacy in non-Hodgkin lymphoma does not require suppression of H3K27 mono-methylation 0.34
Single-cell transcriptomics of human oocytes: environment-driven metabolic competition and compensatory mechanisms during oocyte maturation 0.34
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival 0.34
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival [RNA-Seq] 0.34
Evaluating and comparing the Transcriptome of (human) Hek 293 based cells, expressing either CHD3 or CHD4 0.34
High-throughput sequencing of pluripotent cells 0.34
Fbxo32 mediated gene expression program underlies EMT and metastasis 0.34
Nucleoporin-mediated regulation of cell identity genes 0.33
Splicing function of mitotic regulators links R-loop mediated DNA damage to tumor cell killing 0.33
Effect of CRISPR-Cas9 mediated knock-out of integrin alpha2 on the transcriptome of DU145 prostate cancer cell grown as a spheroid culture 0.33
STVI-120 Induction of differentiation in human epidermal stem cells followed by differential splicing analysis 0.33
SHQ1 regulation of RNA splicing is required for T-lymphoblastic leukemia cell survival 0.32
Cis-SAGe fusion RNAs in transcription splicing factors knocking-down 293T cells 0.32
WRN knockout effects upon gene expression in SW48 and OVK18 0.32
Widespread backtracking by RNA pol II is a major effector of gene activation, 5’ pause release, termination and transcription elongation rate 0.32
ZRANB2 and SYF2 mediated splicing programs converging on ECT2 are involved in breast cancer cell resistance to doxorubicin 0.32
Understanding the reproducibility and robustness of the kidney organoid differentiation protocol using RNA-seq 0.31
A Surveillance System of Active Enhancers by a RACK7-histone Demethylase Complex 0.31
Effect of 48h treatment with 100nM GSK2879552 on T-ALL cell lines LOUCY and PEER 0.31
Proteolytic cleavage by taspase1 and the regulation of the stability of MLL1 0.31
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [RNA-Seq2] 0.3
Capturing the biology of mild versus severe disease in a pluripotent stem cell-based model of Familial Dysautonomia 0.3
MUC1-C Drives Lineage Plasticity in Progression to Neuroendocrine Prostate Cancer 0.3
ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence 0.3
ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence [RNA-Seq] 0.3
Adaptation of the Kinome Promotes Resistance to BET Bromodomain Inhibitors in Ovarian Cancer 0.3
AKAP8 inhibits tumor metastasis by antagonizing EMT-associated RNA alternative splicing 0.3
Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function 0.3
Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function [Rnase-Seq] 0.3
SNHG5 siRNA knock down in HCT116 cells 0.3
DNA breaks and chromatin structural changes enhance the transcription of Autoimmune Regulator target genes [RNA-Seq] 0.29
DNA breaks and chromatin structural changes enhance the transcription of Autoimmune Regulator target genes 0.29
Region-specific Innate Antiviral Responses of the Human Epididymis 0.29
Transcriptome-wide analysis links the short-term expression of the b isoforms of T-cell intracellular antigens to protective proteostasis-mediated survival and quiescence 0.29
Reprogramming postnatal human epidermal keratinocytes toward functional neural crest fates 0.29
LEDGF and HDGF2, histone H3K36 methyl-binding proteins that assist RNA polymerase II transcription through nucleosomes 0.29
RNAseq of HEK293 cells after Chtop knockdown 0.28
Co-transcriptional loading of RNA export factors shapes the human transcriptome 0.28
Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma 0.28
Simultaneous quantification of antibody-RNA conjugates and the transcriptome from fixed cells by RAID 0.28
Genetic-to-epigenetic Therapy for Pancreatic Cancer 0.28
Transciptome profiling of NoDice and RNaseIII null cells prior to and after polyIC treatment 0.28
HEXIM1 is induced by DHODH inhibition to suppress melanoma [Gro-Seq] 0.28
HEXIM1 is induced by DHODH inhibition to suppress melanoma 0.28
IQGAP3 interacts with Rad17 to activate the MRN/ATM/Chk2 signaling and promote radioresistance in lung cancer 0.27
RNA sequencing from FOXM1 knockout HEK293T cells reconstituted with FOXM1 isoforms a, b and c. 0.27
RNA sequencing analysis of selumetinib-resistant CRC cells lines 0.27
DRB/GRO-Seq -/+ UV 0.26
Selective suppression of endothelial cytokine production by progesterone receptor [RNA-seq] 0.26
Selective suppression of endothelial cytokine production by progesterone receptor 0.26
Progressive motor neuron pathology and the role of astrocytes in a human stem cell model of VCP-related ALS 0.26
Nuclear import of the DSCAM-cytoplasmic domain drives signaling capable of inhibiting synapse formation 0.26
Leukodystrophy-associated POLR3A mutations down-regulate the RNA polymerase III transcript and important regulatory RNA BC200 0.26
JMJD3 facilitates C/EBPβ-centered transcriptional program to exert oncorepressor activity in AML 0.26
Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma 0.25
Global hypomethylation mediated changes regulate constitutive PD-L1 expression in melanoma [RNA-Seq] 0.25
Hsa-miR-371a-5p and hsa-miR-518a-3p regulated genes in choriocarcinoma cells 0.25
Tracking of dCas9-methyltransferase footprints 0.25
Splicing and epigenetic factors jointly regulate epidermal differentiation 0.25
ERK potentiates transactivation and oncogenic function of ERG by phosphorylation induced dissociation of PRC2 complex 0.25
KSHV vIRF3 promotes angiogenesis of lymphatic endothelial cells (LECs) 0.24
Quantitative Analysis of p53 and/or TGFBR2 Knockdown Endothelial Transcriptomes after Irradiation 0.24
Neuroligin-4 Regulates Excitatory Synaptic Transmission in Human Neurons 0.24
RNAseq Study in CC-671 Treated Cal-51 Cells 0.24
RNA-seq of YB5 cells treated with Proscillaridin A 0.24
Transcriptional profile of CAOV2 primary and CAOV2 recurrent cells 0.24
Loss of CREBBP results in H3K27Ac loss at enhancers and gene expression repression in lymphoma cells 0.24
Loss of CREBBP results in gene expression repression in lymphoma cells 0.24
Intrinsic histone acetyltransferase activity of BRD4 is responsible for nucleosome eviction and transcriptional activation 0.24
Transcriptomic analysis of effect of oncolytic measles virus (MV) on transformed and non-transformed bone marrow-derived mesenchymal stem cells (MSCs) 0.23
Effect of BB608 on Gene Expression in HNSCC Cell Line 0.23
Dissection of estrogen receptor alpha signaling pathways in osteoblasts using RNA-sequencing 0.23
Acquisition of a hybrid E/M state is essential for tumorigenicity of basal breast cancer cells 0.23
Global gene expression profiles of cardiac progenitors differentiated from human pluripotent stem cells in 3D culture under simulated microgravity 0.23
Cajal bodies are linked to genome conformation 0.23
Cajal bodies are linked to genome conformation [RNA-Seq] 0.23
Transcriptome-wide identification of CELF2 functional targets in T cells 0.23
RNA-Seq data of NCI-H82 cells expressing a Dox-On pRB (pTripZ RB1) grown in the presence or absence of DOX and then treated with vehicle or AZD2811. 0.23
RNA-sequencing transcriptome profiling of normal human keratinocytes differentiation 0.23
Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways [RNA-seq] 0.23
Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways 0.23
UPF1/SMG7-dependent MicroRNA-mediated Gene Regulation 0.23
RNAseq of IL-36 stimulated primary human keratinocytes 0.22
BI Human Reference Epigenome Mapping Project 0.22
Directed differentiation of human embryonic stem cells to corneal endothelial cell-like cells: A transcriptomic analysis 0.22
RING-finger protein 6 amplification activates JAK/STAT3 pathway by modifying SHP-1 ubiquitylation and associates with poor outcome in colorectal cancer 0.22
RBM25 is a global splicing factor promoting inclusion of alternatively spliced exons 0.22
An Alternative Splicing Event Amplifies Evolutionary Differences Between Vertebrates 0.22
CRISPR activation of long non-coding RNAs transiently expressed during cortical neuron differentiation associated with Field, et al, Stem Cell Reports 2018 0.22
DHX36 resolves G-rich structures in mRNA untranslated region to allow their translation [ChrRNA-seq] 0.22
Arnica montana stimulates extracellular matrix gene expression in human macrophages differentiated to wound-healing phenotype. Tested on 5 concentrations. 0.22
Analysis of HPV16 E2 host gene expression using TERT immortalized keratinocytes (NOKs) cell lines and RNA-sequencing 0.22
DGCR8 acts as a novel adaptor for the exosome complex to degrade double-stranded structured RNAs 0.22
RNA-seq analysis of control and CDK12-depleted ovarian cancer cells 0.22
Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions 0.21
Transcriptome profiling of self-renewing hESCs and multipotent mesoderm progenitor cells as a function of substrate stiffness 0.21
FBP2 inhibits sarcoma progression by restraining mitochondrial biogenesis 0.21
Targetting super enhancer associated oncogenes in esophageal squamous cell carcinoma 0.21
Targetting super enhancer associated oncogenes in esophageal squamous cell carcinoma [RNA-seq] 0.21
Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference 0.21
Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference [RNA-Seq] 0.21
Investigsting the role of NF-ĸB p50 S80 phosphorylation in regulating TNFα-induced transcription in HEK293T cells 0.21
The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks 0.21
Parvovirus B19 NS1 protein induces cell cycle arrest at G2 phase 0.21
Reconstitution of the human pancreatic niche stimulates differentiation of hESCs into beta cells and reveals new signals for pancreatic endocrine cell maturation 0.21
Response of triple negative breast cancer to BAZ2A/B inhibition and BET bromodomain inhibition alone and in combination 0.2
Response of triple negative breast cancer to BAZ2A/B inhibition and BET bromodomain inhibition alone and in combination (RNAseq) 0.2
CNOT1 and Transcriptomic Landscape of a HeLa Cell Line 0.2
Downregulation of LATS kinases alters p53 to promote cell migration 0.2
Identification of differentially spliced genes by wild type or S34F mutation of U2AF1 0.2
CRISPR adenine and cytosine base editors with reduced RNA off-target activities [CBE] 0.2
CRISPR adenine and cytosine base editors with reduced RNA off-target activities 0.2
RNAseq of human monocyte cell line (U937-Cas9) WT or IRF2KO 0.2
The global transcriptome analysis in the time course of hESC-derived cardiac differentiation 0.2
Controlling for gene expression changes in transcription factor protein networks. 0.2
BRD9 defines a novel SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors 0.2
Transcriptome analysis of diverse cell types infected with human cytomegalovirus [RNA-Seq] 0.2
iPSC derived motor neuron cultures from C9ORF72 carriers 0.19
Cis-Regulatory Circuits Regulating NEK6 Kinase Overexpression in Transformed B Cells Are Super-Enhancer-Independent (RNA-seq) 0.19
Cis-Regulatory Circuits Regulating NEK6 Kinase Overexpression in Transformed B Cells Are Super-Enhancer-Independent 0.19
RNA-Sequencing of HUVEC treated with Tie2 activating antibody 0.19
The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and converts them into tumorigenic cells 0.19
24hr CA treatment vs. DMSO in HCT116 cells (from 'Identification of CDK8 and CDK19 substrates in human cells using cortistatin A and quantitative phosphoproteomics') 0.19
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq] 0.19
Illumina Total RNA-seq in HeLa 0.19
RNA-seq of naive and primed ES cells 0.18
Comparison of single-cell transcriptomics quality between unfixed cells and cells that were fixed and mock stained according to the RAID procedure 0.18
Molecular characterization of BRSK2 and BRSK1 kinases as negative regulators of the NRF2 transcription factor 0.18
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells [BAA] 0.18
SEUSS: A scalable screening platform to assess transcriptomic and fitness effects of transcription factor overexpression 0.18
CDK12 inhibition in Hep3B, Huh7 and SNU449 cells 0.18
HNF1A deficiency impairs β-cell fate, granule maturation and function 0.18
Transcriptomes of iPSC-derived and post-mortum Hypothalamus Neurons from obese and control donors 0.18
Cell responses to dysregulated VZV-induced cell-cell fusion 0.17
Single-Cell RNA Sequencing Reveals Metallothionein Heterogeneity during hESC Differentiation to Definitive Endoderm [RNA-Seq] 0.17
Transient stabilization, rather than inhibition of MYC amplifies extrinsic apoptosis and therapeutic responses in refractory B-cell lymphoma 0.16
A peninsular structure coordinates asynchronous differentiation with morphogenesis to generate pancreatic islets [bulk vs buds] 0.16
Repression of stress-induced LINE-1 expression protects cancer cell populations from lethal drug-exposures [RNA-Seq] 0.16
Repression of stress-induced LINE-1 expression protects cancer cell populations from lethal drug-exposures 0.16
CD73 knockdown effect in pancreatic cancer cell lines 0.16
Whole transcriptome splicing analysis in isogenic lung epithelial and adenocarcinoma cell lines with or without a recurrent splicing factor mutation, U2AF1 (S34F) 0.16
RNA-Seq of cKIT+ sorted cells from 53-137 day old fetal testes and ovaries and RNA-Seq of TRA-1-81+ H1 and UCLA1 hESCs. 0.16
cKIT+ sorted cells from 57-137 day old fetal testes and ovaries 0.16
miR-450a acts as a tumor suppressor in ovarian cancer by readjusting energy metabolism 0.16
Tpl-2 small molecule project 0.16
Tpl-2 and MEK small molecule inhibitors 0.16
A transcriptome-wide divergence in protein translation scales with LIN28B expression 0.16
SLIGRL-induced gene expression changes in NHEK cells 0.15
Huntingtin aggregation impairs autophagy leading to Argonaute-2 accumulation and global microRNA dysregulation 0.15
transcriptomic profiling of HEK293 cells upon individual knockdown of the splicing factors RBM17, U2SURP or CHERP 0.14
RNA sequencing of MDA-MB231 and U2OS cancer cell lines exposed to the alkylating agent methyl methanesufonate (MMS) and classical chemotherapeutics  0.14
Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines 0.14
Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines (mRNA-Seq) 0.14
A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters 0.14
mRNA expression in human DAOY cells 0.14
Divergent effects of eRF3 and Upf1 on the expression of uORF carrying mRNAs and ribosome protein genes 0.14
Transcriptomic responses to Ivacaftor and prediction of Ivacaftor clinical responsiveness 0.14
Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells [UNSWCD] 0.13
N6-methyladenosine Recruits HNRNPG for Alternative Splicing Regulation 0.13
Identification of long noncoding RNAs in T-ALL cell lines 0.13
Self-associated molecular patterns mediate cancer immune evasion by engagement of Siglec receptors 0.13
Aberrant expression profile of lncRNA and mRNA in dilated cardiomyopathy by RNA-sequence 0.13
Human naïve pluripotent stem cells exhibit X chromosome dampening and X-inactivation (RNA-Seq) 0.12
Human Nonsense-Mediated RNA Decay Initiates Widely by Endonucleolysis and Targets snoRNA Host Genes 0.12
CpG dinucleotides introduced into gag can inhibit HIV-1 gene expression by modulating pre-mRNA splicing 0.12
Long-term in vitro expansion of epithelial stem cells enabled by pharmacological inhibition of PAK1-ROCK-Myosin II and TGF-β signaling (RNA-seq) 0.12
Long-term in vitro expansion of epithelial stem cells enabled by pharmacological inhibition of PAK1-ROCK-Myosin II and TGF-β signaling 0.12
Gene expression of thyroid cancer cell lines 0.11
A myogenic double reporter human pluripotent stem cell line allows prospective isolation of skeletal muscle progenitors 0.11
Identification of a unique subtype of lung squamous cell carcinoma defined by SOX2 and a neural differentiation factor BRN2 [RNA-seq] 0.11
Identification of a unique subtype of lung squamous cell carcinoma defined by SOX2 and a neural differentiation factor BRN2 0.11
UV-Irradiation Induces a Noncoding RNA that Functionally Opposes the Protein Encoded by the Same Gene 0.11
Mapping interactions for the TNIP2 hub protein 0.11
A Stable Transcription Factor Complex Nucleated by Dimeric AML1-ETO Controls Leukaemogenesis 0.11
Small-molecule targeting of brachyury transcription factor addiction in chordoma [rnaseq_compound] 0.11
A runaway PRH/HHEX-Notch3 feedback loop drives cholangiocarcinoma (RNA-Seq) 0.11
Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs 0.11
The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation 0.11
DAOY-Notch1/Notch2 knockout: transcriptome comparison 0.11
A comparison of gene expression between lesional and non-lesional derived keratinocytes of Hailey-Hailey disease patients. 0.11
The CDK7 Inhibitor THZ1 Alters RNA Polymerase Dynamics at the 5’ and 3’ Ends of Genes 0.1
Transcription factors and stress response gene alterations in human keratinocytes following Solar Simulated Ultra Violet Radiation 0.1
Next generation sequencing of small RNAs isolated from exosomes in human semen 0.1
Expression profiling of ILC transitional populations and Aiolos accessability and H3K27ac histone modifications in transfected MNK3 cells 0.1
RNA-Seq from human ILC transitional populations 0.1
Genome-wide expression analysis of human hTert immortalized fibroblasts after donwregulation of MCM7 0.1
RNA sequencing of CACO-2 cells incubated with bifidobacteria grown on human milk oligosaccharides. 0.1
Analyses of T-ALL (COG study) 0.1
RNA sequencing of T-ALL (COG study) 0.1
Endothelial Cells Control Pancreatic Cell Fate at Defined Stages through EGFL7 Signaling 0.1
RUVBL1/RUVBL2 ATPase Activity Drives PAQosome Maturation, DNA Replication and Radioresistance in Lung Cancer 0.09
mRNA sequencing of oropharyngeal cancer cell lines 0.09
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process (RNA-seq) 0.09
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process 0.09
Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner 0.09
Cooptation of tandem DNA repeats for the control of epithelial-to-mesenchymal transition. 0.09
Cooptation of tandem DNA repeats for the control of epithelial-to-mesenchymal transition [RNA-Seq] 0.09
C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi’s Sarcoma Associated Herpesvirus (KSHV) 0.09
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and SMAD4 Y95 Mutation Transcriptomes 0.09
Next Generation Sequencing Facilitates Quantitative Analysis of UVB(20mJ/cm2 and 40mJ/cm2) exposed and untreated HaCaT keratinocytes Transcriptomes 0.08
IRF2 is a master regulator of human keratinocyte stem cell fate 0.08
IRF2 is a master regulator of human keratinocyte stem cell fate [RNA-seq] 0.08
5hmC and gene expression data in breast cancer cell lines treated with an antioxidant 0.08
Maternal-biased H3K27me3 correlates with paternal-specific gene expression in the human morula 0.08
C/EBPα overexpression overrides epigenetic reprogramming by RUNX1-ETO and RUNX1-EVI1 0.08
C/EBPα overexpression overrides epigenetic reprogramming by RUNX1-ETO and RUNX1-EVI1 [RNA-seq] 0.08
The circadian transcriptional landscape in primary human mammary epithelial cells 0.08
Gene expression profiling associated with knockdown of LKB1 in human intrahepatic cholangiocarcinoma 0.08
BRD9 defines a novel SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors [RNA-seq 2] 0.07
Effect of estrogen (E2) treatment on the C4-12 relative to the MCF7 cells 0.07
RNA-seq in endometrial stromal tumors 0.07
Inactivation of CFTR by CRISPR/Cas9 alters transcriptional regulation of inflammatory pathways and other networks 0.07
Be1 and Be2 B cells are transcriptionally distinct 0.07
Chromatin remodeling mediated by ARID1A is indispensable for normal hematopoiesis in mice (human RNA-Seq) 0.07
Cystathionine-β-Synthase Promotes Colon Carcinogenesis 0.07
Effect of OVO-like 1 knockdown on global transcript expression in differentiated BeWo trophoblast cells 0.07
Mutational landscape of aggressive natural killer-cell leukemia and drug profiling highlight JAK-STAT signaling as a therapeutic target in NK-cell malignancies 0.06
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency 0.06
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency (RNA-Seq) 0.06
Protein kinase A-mediated phosphorylation regulates STAT3 activation and oncogenic EZH2 activity 0.06
eVIP2: Expression-based variant impact phenotyping to predict the function of gene variants 0.06
TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs. 0.06
Uridylation-mediated RNA quality control pathway in mammalian cytoplasm [RNA-Seq] 0.06
Transcriptome Analysis of CircMRPS35 mediated mRNA expression profiles 0.06
Culture-induced recurrent epigenetic aberrations in human pluripotent stem cells [RNA-seq] 0.06
Culture-induced recurrent epigenetic aberrations in human pluripotent stem cells 0.06
An intramolecular salt bridge linking TDP43’s RNA recognition motifs dictates RNA binding, protein stability and TDP43-dependent neurodegeneration 0.06
Dexamethasone inhibits respiratory syncytial virus-driven mucus production while increasing viral replication without altering antiviral interferon signaling 0.05
The lung-enriched p53 mutants V157F and R158L/P regulate a novel transcriptome in lung cancer 0.05
Integration of kinase and calcium signaling at the level of chromatin underlines inducible gene activation in T cells 0.05
RNA-Seq data for five HER2 over-expressed samples with twelve green fluorescent protein control samples using human mammary epithelial cells 0.05
ALS implicated protein TDP-43 sustains levels of STMN2 a mediator of motor neuron growth and repair 0.05
The Molecular Dissection of the Oncogenic Role of ETS1 in the Mesenchymal Subtypes of Head and Neck Squamous Cell Carcinoma [RNA-seq Cell lines] 0.04
RNA-seq analysis in knockdown Jurkat samples for each factor of TAL1 complex 0.04
Oncogenic roles of ARID5B in T-ALL 0.04
Folate modulation induces chromosomal instability and higher proliferation of immortalized human keratinocytes 0.04
CRISPR-Cas9 combinatorial KO of epigenetic regulators in human ovarian cancer cells 0.04
Deep sequencing of transcript levels in pluripotent stem cells and their differentiated derivatives in all three germ layers 0.03
IKZF1 as a Master Regulator of Immune Infiltrate Recruitment in Solid Tumors 0.03
Effect of ILF3 depletion in HeLa cells on RNA steady state levels 0.03
Gene expression for surgically treated pancreatic cancer after one neoadjuvant vaccine dose 0.03
RNA-Seq of Breast and Ovarian Cancer Cell Lines 0.03
RNAseq of Extracellular vesicle RNAs and cellular RNAs from HPASMCs with or without TGF-b1 or BMP4 treatment 0.03
The MEF2B Regulatory Network 0.03
The MEF2B Regulatory Network - RNA-seq data 0.03
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations 0.03
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations [RNA-Seq] 0.03
The RNA binding protein IGF2BP3 promotes hematopoietic progenitor cell proliferation by targeting leukemogenic pathways 0.02
RNA-seq and Hi-C sequencing of neutrophil-like cells migrated through large or small pores 0.02
Migration through a small pore disrupts inactive chromatin organisation in neutrophil-like cells [RNA-seq] 0.02
MicroRNA-125a-5p overexpression in human macrophages 0.02
PRMT5 Interacts with the BCL6 Oncoprotein and is Required for Germinal Center Formation and Lymphoma Cell Survival 0.02
High Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML 0.01
Direct identification of endogenous SMG6 targets and a preferred motif spanning SMG6 cleavage sites by parallel analysis of RNA ends in human cells 0.01
KLF6-dependent transcription in renal cancer cells 0.01
Transcriptome analysis of human embryonic stem cells (hESCs) upon siRNA-mediated knockdown of hESC-essential genes 0.01
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin 0.0
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity 0.0
RNA-seq data of small cell carcinoma of the bladder (SCCB) /urothelial carcinoma (Non-SCCB) clinical samples, and bladder-PARCB cell lines 0.0
Integrative classification of human coding and non-coding genes based on RNA metabolism profiles 0.0
Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [H1 RNA-seq] 0.0
Long Non-coding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity 0.0


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