Gene Query: PFN1

Dataset Description Geneva Score
Large-scale profiling of intracellular signalling pathway activation reveals major distinctions between airway smooth muscle cells of asthmatics and non-asthmatics. 59.15
TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs. 42.24
Uridylation-mediated RNA quality control pathway in mammalian cytoplasm [RNA-Seq] 42.24
Virus Mimicry in the Tumor Microenvironment Activates RIG-I Through Unshielding of Endogenous RNA in Exosomes [RNA-Seq] 40.23
mRNA expression profiling in MDA-MB-231 (LM1) cells with a tet-incible MBD2 or p66α knock down, or treated with MBD2-targeting small molecule ABA or APC 40.01
CD95L derived si- and shRNAs and the CD95L mRNA kill cancer cells through an RNAi mechanism by targeting survival genes [siL3.RNAseq.lg] 39.66
NRDE2 negatively regulates nuclear exosome functions 37.98
Cellular gene expression during Hepatitis C Virus replication revealed by Ribosome profiling 34.63
Human co-transcriptional splicing kinetics and coordination revealed by direct nascent RNA sequencing 31.53
RNA-seq of overgrown interscapular adipose tissue with biallelic MFN2 mutations 31.11
Exogenous rescue of KLHL9 in SF210 cell line 30.8
NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements 30.16
UBR7 is a novel E3 ubiquitin ligase for H2BK120 and acts as a tumor-suppressor in breast cancer 28.22
UBR7 is a novel E3 ubiquitin ligase for H2BK120 and acts as a tumor-suppressor in breast cancer [RNA-Seq] 28.22
Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution [III] 26.55
Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution 26.55
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing 25.89
Genome-wide CRISPR-Cas9 screen identifies druggable synthetic lethality between LSD1 and MTORC1 in MLL-translocated AML 24.58
CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression 24.43
Role of microRNAs in the interaction between Salmonella and the host cell 24.31
Global analysis of pre-mRNA subcellular localization upon splicing inhibition by spliceostatin A 24.07
Apoptotic endothelial cells release small extracellular vesicles loaded with immunostimulatory viral-like RNAs 23.85
ABCB5 is activated by MITF and b-catenin and is associated with melanoma differentiation 22.96
MiR-CLIP capture of a miRNA targetome uncovers a lincRNA H19-miR-106a interaction 22.13
Single cell RNA sequencing reveals microglia-like cells in cerebrospinal fluid  during virologically suppressed HIV 22.1
Genome wide mapping of polyadenylation sites in proliferating and contact-inhibited cells and cells with knockdown of cleavage and polyadenylation factors 22.07
O-glcnAc reprograms cellular energetics 21.73
Transcriptome profiling of self-renewing hESCs and multipotent mesoderm progenitor cells as a function of substrate stiffness 20.8
RNA-seq analysis in Cornea epithelial cells (CECs), skin epithelial cells (SECs), LSCs after knocking down PAX6 (3-D shPAX6 LSCs) and SESCs transduced with PAX6(3-D PAX6+ SESCs) upon 3-D differentiation 20.73
Comparative Transcriptomics of Triple Negative Breast Cancer Stem Cells and Differentiated Tumor Cells Identifies Teneurin-4 as a Potential Therapeutic Target 20.73
Mitochondrial hypoxic stress induces RNA editing by APOBEC3G in lymphocytes 20.56
Gene target specificity of the Super Elongation Complex (SEC) family: How HIV-1 Tat employs selected SEC members to activate viral transcription 20.05
Acetylation-Dependent Control of Global Poly(A) RNA Degradation by CBP/p300 and HDAC1/2 19.95
Mitochondrial dsRNA triggers antiviral signalling in humans 19.31
The human blood-nerve barrier transcriptome 19.06
mTORC1 balances cellular amino acid supply with demand for protein synthesis through post-transcriptional control of ATF4 18.94
Subclonal cooperation drives metastasis through modulating local and systemic immune microenvironments 18.63
Transcriptomics analysis of human jejunal enteroendocrine cells after vertical sleeve gastrectomy 18.57
Transcriptomics analysis of enteroendocrine cells following vertical sleeve gastrectomy 18.57
An RNA-centric dissection of host complexes controlling flavivirus infection 18.5
An RNA-centric dissection of host complexes controlling flavivirus infection [RNA-Seq] 18.5
Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders 18.16
Proteinase-Activated Receptor 4 (PAR4) mediates cell membrane blebbing in a Gaq/11, Gai independent, RhoA and ß-arrestin-dependent manner. 18.09
Vitamin C Promotes Apoptosis in Breast Cancer Cells by Increasing TRAIL Expression 18.06
Human CD4+CD103+ cutaneous resident memory T cells are found in the circulation of healthy subjects 17.51
Nm-seq finds thousands of modified 2’-O-methylation sites in mRNA with base precision 17.5
Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0 17.32
Transcriptome-wide study of the response of human trabecular meshwork cells to the substrate stiffness increase 17.28
Integrative classification of human coding and non-coding genes based on RNA metabolism profiles 17.12
Single-cell RNA sequencing-based CRISPRi screening resolves molecular drivers of early human endoderm development [set 1] 17.0
Differential expression of long non‑coding RNA and mRNA in children with Henoch‑Schönlein purpura nephritis 16.83
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors 16.59
Selective expansion of myeloid and NK cells in humanized mice yields human-like vaccine responses (Experiment 2: scRNA-seq) 16.22
Presence of NAD+-capped RNA in human cells: function and removal by the DXO deNADing Protein 16.13
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice 15.58
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice [HCT116_RNA-seq] 15.58
Single-cell RNA sequencing-based CRISPRi screening resolves molecular drivers of early human endoderm development 15.56
Global analysis of enhancer targets: Mosaic-seq 15.48
Characterization of transcriptomics landscape in HUVEC cells exposed to oxidative stress 15.46
Enhancing human kidney organoid differentiation from pluripotent stem cells with high-throughput automation 15.08
Metabolic reprogramming of Kaposi’s sarcoma associated herpes virus infected B-cells in hypoxia 14.97
Base-resolution mapping reveals distinct classes of N1-methyladenosine methylome in nuclear- and mitochondrial-encoded transcripts 14.93
ENPP1 Mutation Causes Recessive Cole Disease by Altering Melanogenesis 14.92
Transcriptomic Analysis of Endothelial Cells from Fibrovascular Membranes in Proliferative Diabetic Retinopathy 14.77
A radiolabeling-free, qPCR-based method for locus-specific pseudouridine detection 14.76
Transcriptomic insights into human decidual and peripheral blood CD4 T cells 14.63
Modeling the MYC-driven normal-to-tumour switch in breast cancer. 14.56
Human cells contain natural double-stranded RNAs with potential regulatory capacity 14.51
RNA-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation 14.51
Human neutrophil genome during PMA- and E. coli encounter-induced activation 14.51
Human iPSC-based Modeling of Late-Onset Disease using Progerin-induced Aging 14.46
RNA sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining 13.84
Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells 13.74
Reassessment of Exosome Composition 13.62
Electronic cigarettes 13.35
HIV-1 perturbs homeostatic ILCs, unmasks ILC1 plasticity, and boosts TCF7+ memory NK cells 13.33
RNA-dependent RNA polymerase sequence specificities of capsnatching viruses are tailored to aid viral replication 13.33
Microprocessor mediates transcription termination in long noncoding microRNA genes 13.32
Extracellular matrix hydrogel derived from decellularized tissues enables endoderm organoids culture 13.3
RNA transcriptome analysis during HSV-1 infection 13.16
Global mRNA expression profile in cardiac progenitor cells generated by ISX-9 12.81
Global expression profiles in cardiac progenitor cells generated by ISX-9 12.81
RNA-Seq of over-expression and knockdown of the lncRNA SLNCR1 in melanoma cells 12.77
Dynamic epigenetic remodeling underlies microRNA-mediated transdifferentiation of human adult fibroblasts into neuronal subtypes 12.66
RNA m5C Methylation in breast cancer using MeRIP-Seq 12.56
Expression data for KDM1B knockdown in Glioma-Initiating Cells (GICs) 12.42
RNA-seq in untreated and flagellin-treated Human Intestinal Myofibroblast cells (HIMF) 12.3
Whole transcriptome sequencing identifies increased CXCR2 expression in PNH granulocytes 12.3
RNA-seq Profiles in RBPJ Maintains Brain Tumor Initiating Cells through CDK9-mediated Transcriptional Elongation 12.18
RBPJ Maintains Brain Tumor Initiating Cells through CDK9-mediated Transcriptional Elongation 12.18
Gene expression profiles of rescue with wild type or SUMO double mutant TRIM24 12.17
Cooperation of GRSF1 and the mitochondrial degradosome (hSuv3-PNPase complex) in degradation of mitochondrial RNA 12.15
Selective roles of vertebrate PCF11 in premature and full-length transcript termination (chromatin-bound RNA-seq) 12.05
Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer 11.99
Short and Long RNA sequencing of human mature erythrocytes 11.92
Modeling Familial Cancer with iPSC Approaches 11.91
CROP-Seq in Primary Human T Cells 11.86
The p30 isoform of CEBPA uncovers a silent enhancer to drive the expression of the tumor promotive factor CD73 in CEBPA mutant AML 11.84
Low cytosolic folate cycling is a hallmark of U251 glioblastoma cells reprogramming towards pluripotency [RNA-seq] 11.58
Low cytosolic folate cycling is a hallmark of U251 glioblastoma cells reprogramming towards pluripotency 11.58
Gene expression and 4sUDRB-seq for NF90/NF110 of human scramble and KD HeLa cells. 11.54
Profiling and bioinformatics analyses reveal differential expression of circular RNA in tongue cancer revealed by high-throughput sequencing 11.53
Whole Transcriptomic Sequencing of Metastatic Castration Resistant Prostate Cancer Samples 11.35
Extensive remodeling of DC function by rapid maturation-induced epigenetic gene silencing [RNA-Seq] 11.34
Extensive remodeling of DC function by rapid maturation-induced epigenetic gene silencing 11.34
Transcriptome of iPSC-derived Neural Cells with Heterozygous Knockout in CHD8 11.2
Arginine citrullination at the C-terminal domain controls RNA Polymerase II transcription 11.13
T47D RNA-seq and ChrRNA-seq data 11.13
Developmental stage specific chromosome architecture in human erythroid cells 10.96
Developmental stage specific chromosome architecture in human erythroid cells (RNA-seq) 10.96
Widespread N6-methyladenosine-dependent RNA Structural Switches Regulate RNA-Protein Interactions 10.85
Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells [RNA-seq] 10.84
Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells 10.84
Ribosomal footprinting of MDA-Parental and MDA-LM2 10.84
The mRNA expression analysis of psoriasis skin lesion mesenchymal stem cell 10.83
Transcriptomic Profiling of Posterior Polymorphous Corneal Dystrophy 10.81
Human Nonsense-Mediated RNA Decay Initiates Widely by Endonucleolysis and Targets snoRNA Host Genes 10.71
Regulation of cellular heterogeneity and rates of symmetric and asymmetric divisions in triple-negative breast cancer 10.67
Novel Targeting of Transcription and Metabolism in Glioblastoma 10.62
MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance 10.55
MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance (RNA-Seq) 10.55
Targeting EZH2 in MYCN-amplified Neuroblastoma 10.51
Targeting EZH2 in MYCN-amplified Neuroblastoma [RNA-seq] 10.51
Transcriptomic analysis of healthy donor and Sickle Cell Disease (SCD) hematopoietic stem/progenitor cells 10.49
Generation, transcriptome profiling, and functional validation of cone-enriched human retinal organoids 10.43
Role of XRN2 ribonucleolytic activity in RNA metabolism 10.4
Subcellular RNA fractions of HSV-1 infected primary human fibroblasts 10.35
The age and genomic integrity of neurons after cortical stroke in humans 10.31
Appropriately Differentiated ARPE-19 Cells Regain a Native Phenotype and Similar Gene Expression Profile 10.29
Ribosomal footprinting of CN34-Parental and CN34-LM1a 10.29
Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples 10.26
High-throughput RNA sequencing on circular RNA profiles of human triple-negative breast cancer and adjacent normal tissues 10.25
Progressive motor neuron pathology and the role of astrocytes in a human stem cell model of VCP-related ALS 10.06
High-throughput RNA sequencing on circular RNA profiles of human bladder cancer tissues and normal bladder tissues 9.96
Efficient and quantitative high-throughput tRNA sequencing 9.89
The ribonuclease activity of SAMHD1 is required for HIV-1 restriction 9.89
CX3CR1/Fractalkine receptor expression separates memory CD8+ T cells with distinct functional profiles (RNA-seq) 9.76
CX3CR1/Fractalkine receptor expression separates memory CD8+ T cells with distinct functional profiles 9.76
Human lymph nodes maintain a unique subset of resident memory T cells with high functional potential important for protective immunity and immunotherapies 9.51
Human Adult Sorted Live Cell Erythroblasts transduced with Sigma shRNA Clone TRCN0000005418 targeting RIOK3 with puromycin selection RNAseq 9.46
Gene expression in skeletal muscle in older individuals subject to ten days of complete bed rest. 9.44
CBFβ-MYH11 fusion blocks hematopoietic differentiation via repression of a GATA2 gene program 9.4
RNA-sequencing of human tendon after injury 9.3
The immediate impact of exoribonucleolysis on nuclear RNA processing, turnover and transcriptional control revealed by rapid depletion of DIS3, EXOSC10 or XRN2 from human cells 9.29
Human embryonic stem cell, chimpanzee induced pluripotent stem cell, orangutan induced pluripotent stem cell, rhesus embryonic stem cell, and their derived cortical organoid RNA-seq 9.16
Next Generation Sequencing of isolated EGFR+ and HLA-G+ first trimester human trophoblasts 9.09
Transcriptome profiling of a mouse model of alveolar soft part sarcoma 9.03
LIN28A Over-expression RNAseq 9.02
Functional and genomic characterization of a xenograft model system for the study of metastasis in triple-negative breast cancer. 8.98
Metastasis in triple-negative breast cancer 8.98
Exploring the RNA landscape of endothelial exosomes 8.96
TLR2 dimerization blockade allows generation of homeostatic intestinal macrophages under acute colitis challenge 8.93
A compendium of promoter-centered long-range chromatin interactions in diverse human tissues and cell types 8.92
Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes 8.84
Peptidomimetic blockade of MYB in acute myeloid leukemia 8.83
Peptidomimetic blockade of MYB in acute myeloid leukemia [RNA-seq] 8.83
JQ1 +/- Vemurafenib in BRAF mutant melanoma (A375) 8.83
Evaluation of the immunogenicity of live-attenuated influenza vaccines in nasal epithelial cells in primary differentiated human nasal epithelial cells [RNA-Seq] 8.83
Evaluation of the immunogenicity of live-attenuated influenza vaccines in nasal epithelial cells in primary differentiated human nasal epithelial cells 8.83
p63 controls the enhancer landscape during keratinocyte differentiation 8.82
Genes regulated by soluble guanylyl cyclase in VCaP prostate cancer cells 8.66
LINC00520 is Induced by Src, STAT3, and PI3K and Plays a Functional Role in Breast Cancer 8.63
Transcriptome analysis of H9 hESC derived cerebral organoids 8.61
Gene expression analysis of airway epithelial cells exposed to flagellin via RNA-seq 8.59
Gene expression analysis of airway epithelial cells exposed to flagellin via RNA-seq and microarray 8.59
Regulators of cellular heterogeneity in basal-like breast cancer influence symmetric versus asymmetric division rates (shRNA targeting) 8.57
ChIPseq and RNAseq analysis of T47D cells with/without silencing TRPS1/CHD4 8.55
Determining effects of microbial metabolite, Urolithin A on colon epithelial cells 8.55
Single-cell ID-seq identifies BMP signaling as a driver of a late stage epidermal differentiation program. 8.51
Effect of BMP inhibition or stimulation of primary human keratinocytes 8.51
Analyzing the interactions of mRNAs, miRNAs, lncRNAs and circRNAs to predict competing endogenous RNA networks in glioblastoma 8.5
Diverse AR-V7 cistromes in castration-resistant prostate cancer are governed by HoxB13 8.49
BET bromodomain proteins function as master transcription elongation factors independent of CDK9 recruitment [NET-seq] 8.35
Comprehensive RNA-Seq profiling in PBMCs of ALS patients and healthy controls 8.23
RNA-Seq profiling in PBMCs and spinal cord from ALS patients and healthy controls 8.23
Identification of Atrial Fibrillation associated genes and functional non-coding variants 8.11
An optimization system for isolating and sequencing of single human colon cancer cells 8.08
Mitochondrial unfolded protein response controls matrix pre-RNA processing and translation 8.08
Identification of renal resident macrophages across species 8.06
Enhancement of Human B Cell Differentiation and Function in Lymph Nodes by the TLR9 Agonist MGN1703 8.02
The stress granule transcriptome reveals principles of mRNA accumulation in stress granules. 8.0
Transcriptome landscape of human primary monocytes response upon different ligand glucocorticoids 7.92
CD95/Fas ligand mRNA is toxic to cells 7.9
Genes encoding cognate receptors for IRI-related recipient cytokines are expressed in donor livers 7.89
Sequencing Universal Human Reference RNA by Smart-seq and early barcoding library preparation methods 7.86
Engineered Nanointerfaces for Microfluidic Isolation and Molecular Profiling of Tumor-specific Extracellular Vesicles 7.83
Single Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human Cortex 7.82
Single-cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment - 5' RNA sequencing and TCR sequencing 7.75
Histone Demethylase-Assisted Somatic Cell Nuclear Transfer Facilitates Derivation of Human Pluripotent Stem Cells 7.72
Glioma-derived miRNA-containing extracellular vesicles induce angiogenesis by reprogramming brain endothelial cells 7.63
Glioma-derived miRNA-containing extracellular vesicles induce angiogenesis by reprogramming brain endothelial cells (longRNA-seq) 7.63
Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA 7.62
Improved LCL to iPSC reprogramming: RNA Analysis of LCLs, reprogrammed iPSCs, and differentiated NSCs reveal potential regulatory and functional processes involved in these cellular transitions. 7.61
Identification of transcription start sites for human A549 cell line using ReCappable-seq 7.58
Quiescent glioblastoma cells shift to an epithelial-mesenchymal transition-like gene program 7.49
Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA 7.48
Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines 7.38
RNA sequencing of HepG2 cells treated with estradiol or estrogen receptor agonist 7.31
The impact of stanniocalcin 1 on the transcriptome of human cord blood stem/progenitors 7.3
Comparative transcriptomic analysis of human and Drosophila extracellular vesicles reveals extensive conservation 7.29
The conserved transcriptional landscapes in human spermatogenesis 7.26
Human iPSC-derived glomeruli provide an advanced model to interrogate podocyte biology and accurately recapitulate podocytopathy 7.2
The transcriptomic landscape of MAIT cell development in the thymus (C006 RNAseq data set) 7.19
Human Adult Sorted Live Cell Erythroblasts RNA-Seq. 7.13
Gene expression profiling of human MSC-educated macrophages vs. classical macrophages from bone marrow and blood 7.1
Induction and Therapeutic Targeting of Human NPM1c+ Myeloid Leukemia in the Presence of Autologous Immune System in Mice 7.08
Transcriptome analysis of kidney organoids 7.03
Transcriptomic Analysis Of circRNAs/miRNAs/mRNAs upon Middle East Respiratory Syndrome Coronavirus (MERS-CoV) infection 6.95
Integrative transcriptome-wide analyses reveal critical HER2-regulated mRNAs and lincRNAs in HER2+ breast cancer 6.93
RNA-seq analysis of melanoma and carcinoma cells expressing FOXQ1 6.91
In vitro modeling of human germ cell development using pluripotent stem cells 6.91
Replication defective viral products exploit a cellular pro-survival mechanism to establish persistent infections 6.73
Loss of the Chr16p11.2 candidate gene QPRT leads to aberrant neuronal differentiation 6.62
Transcriptome analysis upon C6orf203 silencing 6.62
Transcriptomic profiling of HeLa cells infected with Salmonella Typhimurium 6.61
Transcriptome data from human endocrine cells recovered from mouse grafts with pre-engraftment controls 6.52
Identification of metabolically distinct adipocyte progenitor cells in human adipose tissues 6.45
Generation of induced neural stem cells from urine derived cells by synthetic mRNA 6.44
Molecular mechanism underlying increased ischemic damage in the ALDH2*2 genetic polymorphism using a human iPSC model system 6.43
MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia [mutant MEF2C] 6.42
Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells 6.38
Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells (RNA-seq) 6.38
METTL3 and WTAP 6.37
The myelin protein PMP2 is regulated by SOX10 and drives melanoma cell invasion 6.33
Pseudotime Ordering of Single Human Beta-Cells Reveals States of Insulin Production and Unfolded Protein Response 6.29
Tracing the temporal-spatial transcriptomic landscapes of the human fetal digestive tract by single cell RNA-seq analysis [adult tissues] 6.27
KRASG12C inhibition produces a driver-limited state revealing collateral dependencies 6.21
Stage-specific regulation of the WNT/β-catenin pathway enhances differentiation of hESCs into hepatocytes 6.12
Nuclear HNRNPA2B1 HITS-CLIP and RNA-seq 6.11
CD97 is a Critical Regulator of Acute Myeloid Leukemia Stem Cell Function 6.08
3’ Uridylation Expands miRNA Target Repertoire 6.02
Urinary sediment transcriptomic and longitudinal data to investigate renal function decline in type 1 diabetes 6.02
RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells. 6.01
Transcription factor p63 bookmarks genomic loci in epithelial cells and regulates a subset of target genes during epidermal differentiation through dynamic enhancers 5.95
Transcription factor p63 bookmarks genomic loci in epithelial cells and regulates a subset of target genes during epidermal differentiation through dynamic enhancers (RNA-Seq) 5.95
Mitochondrial unfolded protein response controls matrix pre-RNA processing and translation 5.77
Single Cell RNA-Sequencing Identifies Diverse Roles of Epithelial Cells in Idiopathic Pulmonary Fibrosis 5.69
Recapitulating and Deciphering Tumor-stroma Microenvironment by Using a “LEGO” like 3D printed microfluidic device 5.68
To investigate the decay constants (half-lives) of transcript isoforms generated by alternative polyadenylation in proliferating and quiescent cells 5.63
Wide-spread disruption of transcription termination in HSV-1 infection: Next-generation sequencing of translational activityd by ribosome profiling 5.62
Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis 5.58
iRNA-seq: Computational method for genome wide assessment of acute transcriptional regulation from total RNA-seq data 5.57
The transcriptome and chromatin accessbility landscape of mammalian germline 5.57
Codon usage optimization in pluripotent embryonic stem cells [tRNA sequencing] 5.5
Targeted enhancer activation by a subunit of the integrator complex 5.48
Triple vectors expand AAV transfer capacity in the retina 5.47
Poly(A)-ClickSeq resolves CF25-mediated alternative poly-adenylation, HeLa 5.43
Ewing sarcoma resistance to SP-2509 is not mediated through KDM1A/LSD1 mutation I 5.41
RNA-seq melanoma 5.38
HEXIM1 is induced by DHODH inhibition to suppress melanoma 5.35
HEXIM1 is induced by DHODH inhibition to suppress melanoma [Gro-Seq] 5.35
Oligogenic inheritance of congenital heart disease involving a NKX2-5 modifier [human] 5.34
Oligogenic inheritance of congenital heart disease involving a NKX2-5 modifier 5.34
Epigenome Editing by a CRISPR/Cas9-Based Acetyltransferase Activates Genes from Promoters and Enhancers 5.33
Expansion of adult human pancreatic tissue yields organoids harbouring progenitor cells with endocrine differentiation potential 5.25
Whole blood stabilization for the microfluidic isolation and molecular characterization of circulating tumor cells 5.17
UV_24h_GRO-Seq 5.13
CHCHD10 gene KO effect in iPSC drived motor neurons 5.11
Determination of tRNA aminoacylation levels by high throughput sequencing 5.09
Patient-derived xenograft platform for metastatic melanoma: a model for studying resistance to targeted therapy. 5.04
Programmable RNA N6-methyladenosine editing by CRISPR-Cas9 conjugates 5.02
Identification of renal resident macrophages across species [C1] 5.0
Epigenomic plasticity enables human pancreatic alpha to beta cell reprogramming 4.99
Mapping of DHT-responsive or -independent AR-binding sites induced by activated Src in prostate cancer cell lines [RNA-seq] 4.98
Mapping of DHT-responsive or -independent AR-binding sites induced by activated Src in prostate cancer cell lines 4.98
Thyroid State Regulates Gene Expression in Human Whole Blood Cells 4.96
Zika virus directly infects human peripheral neurons and induces cell death 4.96
Human Pancreatic Islets Expressing HNF1A Variant Have Defective β cell Transcriptional Regulatory Networks 4.93
Prediction of bacterial infection outcome using single cell RNA-seq analysis of human immune cells [sorted population Bulk RNA-seq] 4.91
RNA sequencing, chromatin accesibility and ChIP seq analysis of BAP1 -/- human liver organoids 4.89
Transcriptome-wide identification of transient RNA G-quadruplexes in human cells 4.88
Comparative transcriptome analysis reveals that ECM-Receptor Interaction contributes to the venous metastases of hepatocellular carcinoma 4.87
The human cellular nucleic acid binding protien binds G-rich elements close to translation initiation sires and promotes translation. [RNA-Seq] 4.84
The human cellular nucleic acid binding protien binds G-rich elements close to translation initiation sires and promotes translation. 4.84
Characterization of the Merkel cell carcinoma miRNome 4.78
RNA-seq analysis of SLIRP knockdown with 1nM DHT in LNCaP cells 4.77
Toxoplasma gondii remodels the cis-regulatory landscape of infected human host cells 4.74
Transcriptional Targeting Of Oncogene Addiction In Medullary Thyroid Cancer [RNA-Seq] 4.69
Transcriptional Targeting Of Oncogene Addiction In Medullary Thyroid Cancer 4.69
Hyper-excitability of Neurons generated from Patients with Bipolar Disorder 4.66
High-throughput sequencing of PROMPT-enriched samples. 4.63
Activity-dependent transcriptional changes in human neurons 4.61
RNA sequencing of erythroid and granulomonocytic colonies differentiated from transduced bone marrow CD34+ cells expressing U2AF1 S34F mutation, U2AF1 wild-type or empty vector control 4.58
Dilated cardiomyopathy vs Myocarditis 4.52
Clonally expanded CD8 T cells patrol Alzheimer's cerebrospinal fluid 4.52
Clonally expanded CD8 T cells patrol Alzheimer's cerebrospinal fluid [TEMRA] 4.52
Ribosomal footprinting of MDA_Ctrl and MDA_Arg overexpression cell lines 4.51
The pause-initiation limit restricts transcription activation in human cells 4.49
mRNA sequencing of highly and lowly metastatic human colorectal cancer PDXs 4.41
Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 4) 4.36
Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates 4.36
Canonical poly(A) polymerase activity promotes the decay of a wide variety of mammalian nuclear RNAs 4.28
Transcriptome analysis of eosinophilic and noneosinophilic chronic rhinosinusitis with nasal polyps reveals distinct lncRNA expression profiles 4.28
Expression profiling by RNA-Seq of breast cancer samples from patients in walnut-consuming and control groups 4.28
Transcriptional profile of human STAT1-/- fibroblasts expressing LY6E or empty control vector 4.28
Widespread intronic polyadenylation diversifies immune cell transcriptomes 4.27
RNA-seq identifies novel lncRNAs involved in vascular smooth muscle cell proliferation 4.27
Time series single-cell transcriptomic analysis of AEC2 directed differentiation 4.24
Human iPSC-derived cells and microengineered Organ-Chip enhance neural development. 4.24
Pain-driven transcriptome changes in synovium of knee osteoarthritis patients 4.2
Human Adult Sorted Live Cell Erythroblasts transduced with Sigma non-targeting shRNA negative control (SHC002V) with puromycin selection RNAseq 4.2
PGE2 mediated gene expression changes in human cervical stromal cells 4.19
Improving fibroblast characterization using single-cell RNA sequencing: an optimized tissue disaggregation and data processing pipeline 4.18
Transcriptional differences between skin from patients with atopic dermatitis and control skin obtained from the healthy margins of Mohs surgery patients 4.18
Chemical Enhancement of Direct Cardiac Reprogramming In Vitro and In Vivo 4.16
Domain-focused CRISPR-screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells 4.15
Widespread backtracking by RNA pol II is a major effector of gene activation, 5’ pause release, termination and transcription elongation rate 4.15
MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia 4.13
TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency 4.13
DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq] 4.11
Genetic disarray follows mutant KLF1-E325K expression in a congenital dyserythropoietic anemia patient 4.1
A Druggable TCF4- and BRD4-dependent Transcriptional Network Sustains Malignancy in Blastic Plasmacytoid Dendritic Cell Neoplasm (RNA-Seq) 4.07
Transcription elongation regulates genome 3D structure 4.06
Expanding the Nucleoside Recoding Toolkit: Revealing RNA Population Dynamics with 6-thioguanisine 4.03
Diverse and Targetable Kinase Alterations Drive Histiocytic Neoplasms 3.99
Loss of Function Mutations in ETS2 Repressor Factor (ERF) Reveal a Balance Between Positive and Negative ETS Factors Controlling Prostate Oncogenesis [22PC RNA-seq] 3.95
Transcriptome analysis of human airway epithelium infected by Human Bocavirus 1 3.88
MLL-AF4 binds directly to a BCL-2 specific enhancer and impacts H3K27 acetylation 3.87
TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding 3.85
The effect of Abl kinases on non-small cell carcinoma global transcriptome 3.83
Global loss of epigenetic and transcriptional fidility defines a subclass of cancer with immunotherapy resistance 3.8
Antiviral and anti-inflammatory properties of novel anti-HIV candidate ABX464 promotes specifics RNA splicing while preserving cellular RNA integrity. 3.79
Defective transcription elongation in a subset of cancers confers immunotherapy resistance (human cell lines RNA-Seq) 3.78
A Reproducibility-Based Computational Framework Identifies An Inducible, Enhanced Antiviral Dendritic Cell State In HIV-1 Elite Controllers (scRNA-Seq) 3.78
Differential responses of human fetal brain neural stem cells to Zika virus infection 3.76
Identification of a LIF-responsive replication-competent human β cell 3.76
Determining mRNA half-lives on a transcriptome-wide scale 3.75
The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [RNA-Seq_Hs] 3.63
The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis 3.63
Apolipoprotein E4 Expression Causes Gain of Toxic Function in Isogenic Human Induced Pluripotent Stem Cell-Derived Endothelial Cells 3.6
Expression data for hiPSC-derived RPE treated with 10mM Nicotinamide or vehicle 3.57
Mutational landscape of aggressive natural killer-cell leukemia and drug profiling highlight JAK-STAT signaling as a therapeutic target in NK-cell malignancies 3.55
RUNX1-ETO and RUNX1-EVI-1 differentially program the chromatin landscape in t(3;21) and t(8;21) AML but share global C/EBP-alpha dysfunction (RNA-Seq) 3.53
RUNX1-ETO and RUNX1-EVI-1 differentially program the chromatin landscape in t(3;21) and t(8;21) AML but share global C/EBP-alpha dysfunction 3.53
Molecular Pathology of adverse local tissue reaction caused by metal-on-metal implants 3.52
Genome-wide mapping of TEL-AML1 targets in acute leukemia 3.5
Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours 3.5
Compared performance of Affymetrix HTA arrays and Illumina RNAseq for the analysis of tumours [RNA-seq] 3.5
In vitro differentiation of human low threshold mechanoreceptive (LTMR) neurons from embryonic stem cells 3.47
Transcriptome analysis of immature and matured human oocytes from patients of young and advanced maternal age 3.46
Analysis of MGE Transcriptomes with or without Ctnnb1 knockout in human through RNA Sequencing 3.4
3’READS+, a sensitive and accurate method for 3’ end sequencing of polyadenylated RNA 3.37
HDAC and NFκB antagonists synergistically inhibit growth and metastatic dissemination of MYC-driven medulloblastoma 3.34
BRG1 governs Glucocorticoid Receptor interactions with chromatin and pioneer factors across the genome 3.34
RNA polymerase in pre-B-ALL cell lines 3.33
Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels 3.25
Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels [RNA-Seq] 3.25
Platelet Transcriptome Profiling in HIV and ABCC4 as a Biomarker of Platelet Activity 3.25
Biosynthesis of histone messenger RNA employs a specific 3' end endonuclease 3.24
Selective roles of vertebrate PCF11 in premature and full-length transcript termination (human 3' mRNA-seq) 3.24
An interaction with Ewing's sarcoma breakpoint protein EWS defines the specific oncogenic mechanism of ETS factors rearranged in prostate cancer 3.23
Profiling premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis 3.22
Restoration of Progranulin Expression Rescues Cortical Neuron Generation in Induced Pluripotent Stem Cell Model of Frontotemporal Dementia 3.16
Tyrosine-1 of RNAPII CTD controls global termination of gene transcription in mammals 3.06
Human Tfh cell RNA bulk sequencing 3.04
Transcriptome analysis of CNS leukemia 3.01
RNA-seq analysis of primary patient samples to characterize the CNS leukemia 3.01
SNHG15 is a bifunctional MYC-regulated noncoding locus encoding a lncRNA that promotes cell proliferation, invasion and drug resistance in colorectal cancer by interacting with AIF 2.99
Gene expression profile of human placenta from T. Cruzi infected mothers 2.97
Differential gene expressions in the heart of hypertrophic cardiomyopathy patients 2.97
Dynamic gene expression in T-ALL following treatment and release of gamma-secretase inhibition [GRO-Seq] 2.87
Identification of trans regulators of ADAR and A-to-I RNA editing using RNA-seq 2.81
Unbiased identification of trans regulators of ADAR and A-to-I RNA editing 2.81
The mRNA export receptor NXF1 coordinates transcriptional dynamics, alternative polyadenylation and mRNA export 2.81
mRNA sequencing of the mouse and human Hep-Orgs, Chol-Orgs and primary hepatocytes 2.77
Comparative gene expression profiling of human primary endotheliocytes cultivated on polyurethane-based electrospun 3D matrices and natural decellularized vein 2.75
Circular RNA profiling reveals the different distribution/characteristic and possible transport mechanism among the subcellular fractions 2.73
α Cell Function and Gene Expression Are Compromised in Type 1 Diabetes 2.67
Rate of elongation by RNA polymerase II is influenced by specific gene features and histone modifications 2.67
CHCHD2 gene KO effect in iPSC drived motor neurons 2.65
RNA-seq analysis of YFV-17D specific and total naive CD8 T cells in humans 2.6
Differential Protein Occupancy Profiling of the mRNA Transcriptome 2.57
Identification and validation of differentially expressed transcripts by RNA-Sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis 2.56
SLAM-seq for K562 endogenous mRNA decay 2.54
Synaptic dysfunction in human neurons with Autism associated deletions in PTCHD1-AS 2.54
RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients 2.51
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 2.51
4C-seq of insulin promoter, knockdown of INS promoter activity and Genome-wide maps of chromatin state in EndoC-βH1 Cells 2.49
Viral shRNA Knockdown of INS Promotor Activity in EndoC-βH1 Cells  2.49
Enhancer Activation Requires Trans-Recruitment of a Mega Transcription Factor Complex (Gro-seq) 2.45
Enhancer Activation Requires Trans-Recruitment of a Mega Transcription Factor Complex 2.45
NOTCH1 activation in breast cancer confers sensitivity to inhibition of SUMOylation 2.43
Assessing the effect of SUPT4H1 RNAi on the transcription of a repeat-containing reporter construct 2.42
GIST cell cycle dysregulation is required for progression to high-risk disease but not for resistance to kinase inhibitors 2.41
Compare of gene expression between p16INK4A positive and negative regions of colon cancer from five patients 2.4
Comparing oestrogen-responsive genes in endometrial and breast cancer cell lines 2.36
Transcriptome landscape of HeLa response upon triamcinolone acetonide 2.36
C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi’s Sarcoma Associated Herpesvirus (KSHV) 2.32
Cutaneous Immunoprofile of Three Spotted Fever Group Rickettsiosis 2.31
Long non-coding RNA profiling of human lymphoid progenitors reveals transcriptional divergence of B cell and T cell lineages 2.31
Simultaneous quantification of antibody-RNA conjugates and the transcriptome from fixed cells by RAID 2.27
H3.3K27M cooperates with p53 loss and Pdgfra gain in mouse embryonic neural progenitor cells to induce invasive high-grade gliomas 2.21
H3.3K27M cooperates with p53 loss and Pdgfra gain in mouse embryonic neural progenitor cells to induce invasive high-grade gliomas [Human RNA-Seq] 2.21
RNA-seq analysis of gene expression patterns during hESC neural differentiation 2.18
hESC neural differentiation 2.18
miR-93 Targets in Human Endothelial Cells 2.14
MLL-AF4 Spreading Identifies Binding Sites that Are Distinct from Super-Enhancers and that Govern Sensitivity to DOT1L Inhibition in Leukemia. 2.11
Genomic profiling of human spermatogonial stem cells [BulkRNA-Seq] 2.01
RNASeq of mouse, human, and non-human primate primary dermal fibroblasts to poly(I:C) transfection 2.0
Transcriptome-wide response to synthetic chromatin protein PcTF 1.95
Human Cord Blood Sorted Live Cell Erythroblasts RNA-Seq 1.94
Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing 1.94
ARID1A regulates condensin II distribution and chromosomal partition 1.92
ARID1A regulates condensin II distribution and chromosomal partition [RNA-seq] 1.92
circNFIB suppresses lymphatic metastasis of pancreatic cancer 1.9
Single-cell transcriptomics of human oocytes: environment-driven metabolic competition and compensatory mechanisms during oocyte maturation 1.87
Transcriptome analysis reveals determinant stages controlling human embryonic stem cell commitment to neuronal cells 1.87
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin 1.85
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity 1.85
Multiplexed engineering and analysis of endogenous enhancer activity in single cells: Mosaic-Seq of beta-globin locus (pooled infection) 1.81
Stable oxidative cytosine modifications accumulate in cardiac mesenchymal cells from Type2 diabetes patients: rescue by alpha-ketoglutarate and TET-TDG functional reactivation [human cells RNA-seq] 1.75
Stable oxidative cytosine modifications accumulate in cardiac mesenchymal cells from Type2 diabetes patients: rescue by alpha-ketoglutarate and TET-TDG 1.75
Simultaneous detection and relative quantification of coding and non-coding RNA using a single sequencing reaction 1.75
Low H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas 1.69
RNA-seq data of small cell carcinoma of the bladder (SCCB) /urothelial carcinoma (Non-SCCB) clinical samples, and bladder-PARCB cell lines 1.69
Transcriptional profiling identifies differential expression of long non-coding RNAs in Jo-1 associated and inclusion body myositis 1.65
Induction of Cardiomyocyte Proliferation [pz-822_human] 1.62
Regulation of Cell Cycle to Stimulate Adult Cardiomyocyte Proliferation and Cardiac Regeneration 1.62
SHANK2 mutations associated with autism spectrum disorder cause hyperconnectivity of human neurons 1.55
hMTR4 plays a central role in creating balanced nuclear RNA pools for degradation and export II 1.55
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [RNA-Seq_Stability] 1.54
A novel Menin-MLL inhibitor induces specific chromatin changes and eradicates disease in models of MLL-rearranged leukemia [RNA-Seq II] 1.48
CDK4/6 inhibitors target SMARCA4-determined cyclin D1 deficiency in hypercalcemic small cell carcinoma of the ovary (I) 1.41
An atlas of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2 1.4
Dual RNA-seq of diverse human, mouse and pig cell-types infected with various Salmonella strains 1.33
Dual RNA-seq – High-resolution comparative Dual RNA-seq time-course 1.33
Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling 1.33
Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling (mRNA) 1.33
Profiling in vivo Bone Lesion (IVBL) and Orthotopic tumors by Next Generation Sequencing 1.33
A single-cell transcriptome atlas of the human pancreas 1.3
Transcriptomic analysis of inter- and intra-patient variation in human iPSC cardiomyocytes: Platform for precision medicine to predict drug toxicity 1.28
Human islets of varying quality: the good, the (not so) bad and the ugly 1.28
Transcriptome analysis of peripheral blood monocytes 1.25
RNA-seq data 1.23
Single-cell analysis of human kidney organoids 1.18
Genome-Wide Specificity of DNA-Binding, Gene Regulation, and Chromatin Remodeling by TALE- and CRISPR/Cas9-Based Transcription Factors 1.16
ELAVL2-regulated transcriptional networks in human neurons link atlernative splicing, autism and human neocortical evolution 1.16
Increased Neanderthal ancestry in genomic regions associated with lipid catabolism in contemporary Europeans 1.15
Pericyte-like cells generated from human pluripotent stem cells support hematopoietic stem and progenitors ex vivo 1.15
RNA-seq of SCLC PDX models treated with EP 1.15
Fibroblasts in cholesteatoma activate osteoclasts. 1.15
Tri-mannose grafting of chitosan nanocarriers remodels the macrophage response to bacterial infection 1.14
Antioxidant metabolism in activated CD8+ T cells regulates stem-like human memory T cell formation and anti-tumor immunity 1.11
H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation [RNA_Chondroblastoma_H3K36M_H3WT] 1.05
H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation 1.05
Aortic Valve Tissue: Stenosis vs. Sclerosis 1.04
Genome-wide search for differentially expressed RNAs responsible for the effects induced by Ebola virus replication and transcription 1.02
Gene expression for surgically treated pancreatic cancer after one neoadjuvant vaccine dose 1.01
Integrated high-throughput screen to identify novel treatment leads for pediatric acute myeloid leukemia (AML) 1.0
DHX36 resolves G-rich structures in mRNA untranslated region to allow their translation 0.98
Loss of EGFR-DDEF1 signaling in metastatic and unresectable hepatoblastoma 0.98
Transposon-based construction of strand-specific RNA-seq libraries 0.97
The effect of slow and rapid H2S production on the levels of LPS-induced proinflammatory mediators and transcription in different human cell cultures 0.96
TOP2B disturbed the quality of human oocytes with advanced maternal age 0.93
Priming mobilization of hair follicle stem cells triggers permanent loss of regeneration after alkylating chemotherapy 0.93
Biomarkers of Cavernous Angioma with Symptomatic Hemorrhage (CASH) [RNA-seq] 0.93
Biomarkers of Cavernous Angioma with Symptomatic Hemorrhage (CASH) 0.93
Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity 0.87
RNA-seq and flow-cytometry of conventional, scalp, and palmoplantar psoriasis reveal shared and distinct molecular pathways 0.87
UMI-count modeling and differential expression analysis for single-cell RNA sequencing 0.86
Landscapes of gene translation in hepatocellular carcinoma tumors revealed by ribosome profiling 0.82
Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas [RNA-seq] 0.79
Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas 0.79
RUNX1 mutations lead to a myeloid differentiation block by altering the RUNX1 transcriptional program (RNA-Seq) 0.74
RUNX1 mutations lead to a myeloid differentiation block by altering the RUNX1 transcriptional program 0.74
Human ovarian granulosa cell transcriptome 0.74
Comprehensive Transcriptome Analysis of Cerebral Cavernous Malformation Across Multiple Species and Genotypes 0.72
High-throughput single cell transcriptome analysis and CRISPR screen identify key β cell-specific disease genes 0.71
Comparative Transcriptomic Analysis of Hematopoietic System Across Species by Microwell-Seq 0.62
Alterations of the MEK/ERK, BMP, and Wnt/b-catenin pathways detected in the blood of individuals with lymphatic malformations 0.5
Stapled peptide inhibitors of RAB25 target context-specific phenotypes in cancer 0.48
Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [Modifications - screen] 0.45
siRNA-mediated knockdown 0.41
Gene expression in control and DOCK8 CRISPR KHYG1 NK cells 0.41
Genomic Reorganization of Lamin-Associated Domains in Cardiac Myocytes is Associated with Differential Gene Expression and DNA Methylation in Human Dilated Cardiomyopathy [RNA-Seq] 0.39
Genomic Reorganization of Lamin-Associated Domains in Cardiac Myocytes is Associated with Differential Gene Expression and DNA Methylation in Human Dilated Cardiomyopathy 0.39
Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular 0.38
An electrical pulse stimulation protocol to study acute epigenetic response to muscle cell contraction uncovers acute hydroxymethylation of the exercise-responsive gene Nr4a3 0.37
An electrical pulse stimulation protocol to study acute epigenetic response to muscle cell contraction uncovers acute hydroxymethylation of the exercise-responsive gene Nr4a3 [RNA-Seq] 0.37
Genome Wide Chromatin Mapping of accessibility (ATAC-seq) and H3K27ac histone modifications in CD56bright and CD56dim natural killer cells 0.34
Gene expression profiles of PD1-high, PD1-intermediate, and PD1-negative tumor-infiltrating CD8 T cells in hepatocellular carcinoma 0.34
Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes 0.32
RNA-seq of primary patient AML samples 0.32
Single Cell RNASeq profiling of stromal vascular fraction from Subcutaneous and visceral adipose tissue 0.26
RNA-sequencing of tamoxifen-resistant and -sensitive breast cancer cell lines. 0.26
Human Cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion. 0.25
MicroRNA Marker Based Prognostication of Oral Squamous Cell Carcinoma 0.23
Global Long Terminal Repeat activation participates in establishing the unique gene expression program of classical Hodgkin Lymphoma [Primary RNA-Seq] 0.23
Screening in Human Cardiac Organoids Identifies a Requirement for the Mevalonate Pathway in Cardiomyocyte Proliferation 0.21
circRNA-sequencing 0.2
RNA-Seq following PCR-based sorting reveals rare cell transcriptional signatures 0.2
RNA-seq of exosomes identifies lncRNA profiles that distinguish early-stage esophageal squamous cell carcinoma (ESCC) from non-malignant esophagitis 0.19
Human pulmonary artery endothelial cells (hPAECs) with downregulated BMPR2 signaling demonstrate a unique gene expression signature after exposure to overexpression of AdAlox5 0.18
Solid phase chemistry to covalently and reversibly capture thiolated RNA 0.15
RNA-seq and small RNA-seq from WT and ADAR1 knockdown H9 lines and their differentiation to specific types of neurons 0.14
System-wide profiling of RNA-binding proteins uncovers key regulators of virus infection 0.12
Targets mediated microRNA arm-imbalance promotes gastric cancer progression [lncRNA] 0.12
Global transcriptome analysis of WT versus HEB-/- hESCs 0.09
single cell RNA-seq from Purkinje cell (ENCSR888LYA) 0.06
RNA sequencing of prostate cancer and normal tissue from African Americans and European Americans 0.03


Contact Us

For scientific and technical queries contact Butte Lab @UCSF


Cite GENEVA Tool

Manuscript in Preparation