Gene Query: PMAIP1

Dataset Description Geneva Score
RNA-seq of cancer-associated fibroblasts (CAF) treated with PBS or extracellular vesicles (EV) from MCF10A or MDA-MB-231 cells 187.03
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq2] 166.81
VAMP8 contributes to TRIM6-mediated type-I interferon antiviral response upon West Nile virus (WNV) infection 136.29
Mechanistic Model-Guided Study of Embryonic Morphogenesis 131.3
The effect of slow and rapid H2S production on the levels of LPS-induced proinflammatory mediators and transcription in different human cell cultures 124.22
Expression analysis of primary human monocytes stimulated with an anti-TLR10 mAb (5C2C5) 101.01
Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function 95.24
IgG immunocomplexes sensitize human monocytes for inflammatory hyperactivity via transcriptomic and epigenetic reprogramming in Rheumatoid Arthritis 93.7
DUX4 recruits p300/CBP through its C-terminus and induces global H3K27 acetylation changes 89.19
The translation termination factor GSPT1 is a phenotypically relevant off-target of heterobifunctional phthalimide degraders 84.42
Glioblastoma stem cells infected by ZIKA virus 76.45
Effect of Influenza virus infection on lncRNA expression in A549 cells 74.96
Over expression of Receptor Activity Modifying Protein 2 in HEK293T cells 68.06
Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation 67.72
Genome-wide analysis of Dengue virus 2 infected cells 67.53
Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 66.43
Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq 66.43
Effect of ILF3 on translation during homeostasis and the antiviral response 61.91
Single-cell transcription profiling in KS1 patient iPSCs and NPCs 61.67
Trnascriptome analysis of HeLa cells infected with rTHOV-wt, -dML, -SW mutant or mock-treated 61.51
Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy 61.28
RNA-seq and Hi-C sequencing of neutrophil-like cells migrated through large or small pores 60.99
Migration through a small pore disrupts inactive chromatin organisation in neutrophil-like cells [RNA-seq] 60.99
Hypertonic saline attenuates the cytokine-induced pro-inflammatory signature in primary human lung epithelia 60.02
Peptidomimetic blockade of MYB in acute myeloid leukemia 59.49
Peptidomimetic blockade of MYB in acute myeloid leukemia [RNA-seq] 59.49
Transcriptional response of human endocervical epithelial A2EN cells to infection with wild-type or CpoS-deficient Chlamydia trachomatis L2/434/Bu 58.32
Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing 57.04
Genome-wide analysis of herpes simplex virus type 1 (HSV-1) infected cells 56.39
Transcriptome-wide analysis of IL2RA enhancer activation by CRISPRa 54.79
Lineage specific differentiation is influenced by state of human pluripotency 52.84
Lineage specific differentiation is influenced by state of human pluripotency [RNA-seq] 52.84
Transcriptome analysis in Neobractatin treated cells 52.13
ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion [12Z_1A_PI3K_RNA-seq] 52.1
TRIM24 is an oncogenic transcriptional co-activator of STAT3 in glioblastoma 51.8
CBFb-SMMHC inhibition triggers apoptosis by disrupting MYC chromatin dynamics in acute myeloid leukemia 49.83
CBFb-SMMHC inhibition triggers apoptosis by disrupting MYC chromatin dynamics in acute myeloid leukemia [RNA-seq] 49.83
Crizotinib v. DMSO in SW480 cells 48.53
RNA-seq data for non-targeting siRNA and CDK11 siRNA transfection in SHhES8 cells 47.58
A SIRT1-centered Circuitry Regulates Breast Cancer Stemness and Metastasis 47.13
microRNAs with an AAGUGC seed motif constitute an integral part of a signaling network driving NSCLC cell proliferation 46.51
Mitochondrial unfolded protein response controls matrix pre-RNA processing and translation 46.48
Next Generation RNA Sequencing Analysis of AMPK Wild Type, AMPKα-KO and AMPKα1-2A U2OS cell Transcriptomes 44.55
Rnase L reprograms translation by widespread mRNA turnover escaped by antiviral mRNAs 44.51
Transcriptome analysis of H9 hESC derived cerebral organoids 44.01
Human HAP1 cells before and after nutrient deprivation 43.25
Transcriptomic profiling of human HAP1 cells before and after nutrient deprivation 43.25
Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0 42.48
PRDM1 inhibits proliferation of human colon cancer organoids 42.06
TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency 41.77
Transcript abundance in A-T-derived iPSC: Comparing isogenic cells to unrelated individual 41.32
Impact of DNA MMR activity on antiviral gene expression in H441 cells infected with influenza A virus 40.96
Differential expression of human parthenogenic stem cells, neural stem cells and DA progenitors. 40.94
Trans-chromosomal regulation by a novel lincRNA required for adipogenesis that escapes X-chromosome inactivation 40.83
A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons [RNA-seq] 39.76
A critical but divergent role of PRDM14 in human primordial germ cell fate revealed by inducible degrons 39.76
RNA sequencing of human macrophages treated with iron chelator deferiprone (DEF), with and without lipopolysaccharide (LPS) 39.71
RNA-seq of human fibroblasts after irradiation 38.08
Effect of OVO-like 1 knockdown on global transcript expression in differentiated BeWo trophoblast cells 38.04
Stimulation of isolated plasmacytoid dendritic cells (pDCs) with TLR9 agonist CpG C (CpG) and TLR7 agonist imiquimod (IMQ) 37.08
Genome-wide expression profiling of an in vitro model for studying esophageal epithelial differentiation 37.0
Tracking of dCas9-methyltransferase footprints 36.73
RNASeq of mouse, human, and non-human primate primary dermal fibroblasts to poly(I:C) transfection 36.29
Transcriptome profiling of influenza virus-infected human bronchial epithelial cells 36.2
Antioxidant metabolism in activated CD8+ T cells regulates stem-like human memory T cell formation and anti-tumor immunity 36.01
Global mRNA expression profile in cardiac progenitor cells generated by ISX-9 36.01
Global expression profiles in cardiac progenitor cells generated by ISX-9 36.01
POU2AF1 Functions in the Human Airway Epithelium to Regulate Expression of Host Defense Genes 35.95
POU2AF1 Functions in the Human Airway Epithelium to Regulate Expression of Host Defense Genes [RNA-Seq] 35.95
Genetic Tagging During Human Mesoderm Differentiation Reveals Tripotent Lateral Plate Mesodermal Progenitors 35.34
Transcriptomic and gene ontology profiling of the human corneal cell types 35.21
Distinct epigenomes in CD4+ T cells of newborns, middle-ages and centenarians. 35.2
Neurotrophic Tyrosine Kinase Receptor 1 is Epigenetically Regulated by IL-13 and Contributes to Allergic Inflammation 35.05
NSD2 overexpression links drives clustered chromatin and transcriptional changes in a subset of insulated domains of insulated domains 35.0
Transcriptomes of oxLDL exposed trained monocytes 34.8
oxLDL exposed trained monocytes 34.8
Gene expression analysis of BRD4 knockdown in HT-29 and HCT116 cells 34.64
Analysis of Th17 gene signature in the presence of CD28 costimulation in human CD4 naïve T cells 34.41
Heterozygous p53-R280T mutation promotes proliferation of NPC cells through activating PI3K/Akt signaling pathway 34.35
Human blood CD1c⁺ dendritic cells encompass CD5-high and CD5-low subsets that differ significantly in phenotype, gene expression and functions 34.23
Genome Wide Chromatin Mapping of accessibility (ATAC-seq) and H3K27ac histone modifications in CD56bright and CD56dim natural killer cells 34.17
Extensive remodeling of DC function by rapid maturation-induced epigenetic gene silencing 33.85
Extensive remodeling of DC function by rapid maturation-induced epigenetic gene silencing [RNA-Seq] 33.85
Essential Roles of SETD7 as Transcriptional Activator and Co-regulator of H3K36me in Cardiac Lineage Commitment 33.26
Inducible three-factor direct reprogramming to nephron progenitors using piggyBac transposons 33.19
A role for ZNF598 in post-transcriptional gene regulation 32.91
Transcriptomic analysis of effect of oncolytic measles virus (MV) on transformed and non-transformed bone marrow-derived mesenchymal stem cells (MSCs) 32.67
Transcriptomes of human monocytes after ex vivo exposure to uric acid 32.63
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 [HOM] 32.59
Quantitative mass spectrometry-based proteomics reveals the dynamic protein landscape during initiation of human Th17 cell polarization 32.39
Genome-wide view of the impact of Spt5-Pol II inhibitors (SPIs) on mRNA levels [RNA-Seq 2h] 32.25
Polysome-associated mRNA profiling of cancer cells in response to CXCL12 and IGF1 32.22
Candidate genes and pathways downstream of PAX8 involved in ovarian high-grade serous carcinoma 31.71
Functional studies of missense TREM2 mutations in human stem cell-derived microglia 31.62
The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia 31.43
Uridilation by TUT4/7 restricts retrotransposition of human Line-1s 31.29
Gene expression in PANC1 cells treated with Rakicidin 31.05
DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells [RNA-seq] 31.04
DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells 31.04
Whole-Transcriptome Profiling of Canine and Human in Vitro Models Exposed to a G-Quadruplex Binding Small Molecule 30.95
Genome-wide RNA-seq from GALNT14-depleted and GALNT14 overexpressing MDA-MB-231 LM2 and Par cells 30.7
Integrated analyses of early responses to radiation in glioblastoma identify new alterations in RNA processing and candidate targets to improve treatment outcomes 30.58
Transcription-dependent control of stem cell self-renewal and differentiation by the splicing factor U2AF1 30.56
Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface 30.53
Targeted differentiation of regional ventral neuroprogenitors and related neuronal subtypes from human pluripotent stem cells 30.45
transcriptome studies of BRD4 inhibitor BDF-1253 on renal clear carcinoma 786-O cells 30.42
Transcriptome variation among human embryonic stem cell lines impacts on their differentiation 30.17
Pitfalls in Single Clone CRISPR-Cas9 Mutagenesis to Fine-map Regulatory Intervals 30.07
Genome-wide transcriptome analysis of NIPBL iPSC and commited cardiomyoctes 29.89
Molecular characterization of BRSK2 and BRSK1 kinases as negative regulators of the NRF2 transcription factor 29.88
Model systems of DUX4 expression recapitulate the transcriptional profile of FSHD cells 29.59
Impact of HypERrlnc Knockdown on the human pericyte transcriptome 29.54
Genome wide mapping of polyadenylation sites in proliferating and contact-inhibited cells and cells with knockdown of cleavage and polyadenylation factors 29.47
Transcriptomic analysis of IPF lung-associated and normal peripheral blood T cells 29.14
Global gene expression analysis of human monocyte-derived dendritic cells (DCs) treated with HMGN1 (N1) and R848 alone or in combination. 28.81
Nuclear Actin Regulates Inducible Transcription by Enhancing RNA Polymerase II Clustering 28.66
The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling [RNA-seq] 28.34
The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling 28.34
ARID1A and ARID1B loss in HCT116 cells 28.15
An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis 28.15
UPA-Seq: Prediction of functional lncRNAs using the sensitivities to UV-crosslinking 28.09
Effect of 48h treatment with 100nM GSK2879552 on T-ALL cell lines LOUCY and PEER 28.06
Parvovirus B19 NS1 protein induces cell cycle arrest at G2 phase 27.99
mRNA expression data from human parthenogenetic haploid ESCs (hPGES), normal ESCs (H9) and human fibroblast 27.87
Genomic analysis of human parthenogenetic haploid ESCs (hPGES), normal human ESCs(H9) and human forskin fibroblast 27.87
Transcriptional responses of human insulinoma cells to acute cytokine exposure 27.84
mRNA-seq from Nutlin-3a, doxorubicin, and DMSO treated HCT116 p21-/- cells 27.72
Improved LCL to iPSC reprogramming: RNA Analysis of LCLs, reprogrammed iPSCs, and differentiated NSCs reveal potential regulatory and functional processes involved in these cellular transitions. 27.57
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment [RNA-Seq] 27.57
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment 27.57
Identification of a dynamic core transcriptional network in t(8;21) AML regulating differentiation block and self-renewal [RNA-Seq] 27.48
Identification of a dynamic core transcriptional network in t(8;21) AML regulating differentiation block and self-renewal 27.48
The contribution of adenosine receptor 3-mediated signaling to TLR4-induced responses by human dendritic cells 27.43
The role of CFTR in islet function 27.4
Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells 27.38
Maintaining iron homeostasis is the key role of lysosomal acidity for cell proliferation 27.32
Identification of differentially expressed genes between senescence and senescence bypass cells 26.78
Club cells surviving influenza A virus infection induce temporary non-specific anti-viral immunity 26.63
List of TIAM1 differentially expressed genes in SW620 cells [RNA-seq] 26.6
The inhibitory effect of TIAM1 on TAZ transcriptional activity and TIAM1 differentially expressed genes 26.6
High level DNA repair gene expression in human ES cells 26.5
Long non-coding RNAs are central regulators of the IL-1b-induced inflammatory response in human lung fibroblasts 26.35
RNA sequencing of GlyH-101-treated MCF-7 cell line 26.26
Helios enhances the preferential differentiation of human fetal CD4+ naïve T cells into regulatory T cells. [RNA-Seq - ex vivo] 26.12
A novel target of EZH1/2 for treatment of mantle cell lymphoma 26.01
Inhibition of the Aryl Hydrocarbon Receptor - Polyamine Biosynthesis Axis Suppresses Multiple Myeloma and prostate cancer progression 25.96
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (mRNA-Seq) 25.89
Gene expression profiling of leukemia cells following asparagine depletion 25.86
Cleavage Factor Im as a key regulator of 3’ UTR length 25.64
RNA sequencing for human induced pluripotent stem cell cardiomyocyte differentiation 25.56
Quantitative Proteomics Reveals a Unique Wiring of Signaling Pathways that Protects Human Regulatory T Cell Identity 25.48
Role of COP1 on MAP kinase transcriptional output in melanoma 24.86
The DPYSL2 gene connects mTOR and schizophrenia 24.73
Gene expression analysis of immortalized human liver progenitor-like cells in culture 24.71
Super-enhancer-driven CCAT1 is co-activated by SOX2 and TP63 and promotes squamous cancer from esophagus, head and neck and lung [RNA-seq] 24.69
Super-enhancer-driven CCAT1 is co-activated by SOX2 and TP63 and promotes squamous cancer from esophagus, head and neck and lung 24.69
APT1 regulates the asymmetric partitioning of Notch and Wnt signaling during cell division 24.5
Histone Demethylases KDM3A and KDM4C regulate mesenchymal stromal cell senescence and bone aging through condensin-mediated heterochromatin organization 24.49
Genome-wide profiling of siRNA targeting EWS-FLI1 in TC32 Ewing sarcoma cell line 24.49
Transcriptomic profiling of normal human cardiac fibroblast treated with halofuginone 24.48
CD95/Fas ligand mRNA is toxic to cells 24.45
Next Generation Sequencing Facilitates Quantitative Analysis of colorectal cancer cells transfected with NC siRNA or RPL9 siRNA 24.19
Control of prostate tumour growth by the long non-coding RNA GHSROS (LNCaP) 24.13
Food-derived Compounds Apigenin and Luteolin Modulate mRNA Splicing of Introns with Weak Splice Sites 24.03
Transcriptome of U251 cells overexpression complement component 7 23.95
RNA-seq analysis to identify the genes regulated by p53-SET interplay 23.82
XPO1 inhibition antagonizes MCL via nuclear retention of IkB: Selinexor demonstrates antitumor activities in both ibr-sensitive and ibr-resistant tumor cells 23.78
NHLRC1 re-expression in cancer cells 23.5
SETDB1 compacts the inactive X chromosome in part through silencing an enhancer in the IL1RAPL1 gene 23.39
Gene expression profiles of tumor-infiltrating CD8 T cells in hepatocellular carcinoma 23.33
Cerebellar differentiation in Ataxia-Telangiectasia 23.24
Transcriptional Signatures of Hypoxic and Inflammatory Renal Epithelial Injury 23.05
CD13 and ROR2 permit isolation of highly enriched cardiac mesoderm from differentiating human embryonic stem cells 23.02
Isolation of highly enriched cardiac mesoderm from differentiating human embryonic stem cells 23.02
A novel P300 inhibitor reverses DUX4-mediated global histone H3 hyperacetylation, target gene expression and cell death 22.62
The Jumonji-domain histone demethylase inhibitor JIB-04 deregulates oncogenic programs and increases DNA damage in Ewing Sarcoma, resulting in impaired cell proliferation and survival, and reduced tumor growth 22.6
RNA-seq analysis of YFV-17D specific and total naive CD8 T cells in humans 22.58
RNA-Sequencing experiment for effects of PKF115-584 treatment on four T-ALL cell lines (RPMI8402, HPB-ALL, Jurkat, CCRF-CEM). 22.2
Gene expression profiling in lung and breast cancer cells treated by Bloom-specific siRNAs 22.06
Phosphatase inhibitor PPP1R11 modulates resistance of human T cells towards Treg-mediated suppression of TCR signaling 22.03
Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA 21.86
Enriched retinal ganglion cells derived from human embryonic stem cells (RNA-seq) 21.84
RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-κB and p53 transcription factors in cells exposed to high doses of ionizing radiation [RNA-Seq] 21.77
REPROGRAMMING IDENTIFIES FUNCTIONALLY DISTINCT STAGES OF CLONAL EVOLUTION IN MYELODYSPLASTIC SYNDROMES 21.44
Activating PAX Gene Family Paralogs to Complement PAX5 Leukemia Driver Mutations 21.43
Inhibition of TNBC metastasis by Gpx1 21.23
A novel compound that blocks HIV-1 replication inhibits the splicing regulatory function of SRSF10 21.21
Effect of REST on cancer invasiveness in MCF-7 and MDA-MB-231 cells using RNA-sequencing (RNA-seq) analysis . 21.14
Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing 21.08
Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing [RNA-seq] 21.08
Assessing the effect of SUPT4H1 RNAi on the transcription of a repeat-containing reporter construct 21.01
MBNL1-dependent modulation of gene expression in MDA-MB-231 breast cancer cells 20.93
Muscleblind-like 1 suppresses breast cancer metastatic colonization and stabilizes metastasis suppressor transcripts 20.93
Next generation sequencing of human hepatic stellate cell line, LX-2 treated with recombinant human TGF-β1, with DMSO or ML290 (5 µM) for 72h. 20.91
Sequencing of freshly produced RNA following exposure of cells to DNA damage-inducing UV mimetic 4-hydroxyaminoquinolone (4-NQO) 20.75
mRNA-sequencing of 293T-no dice transfected with miR-16, miR-214, or KSHV-miR-K6-5p 20.62
DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq] 20.61
RNA sequencing analysis of human embryonic stem cells and axial progenitors 20.43
Functional interactions between Mi-2β and AP1 complexes control response and recovery from barrier disruption 20.35
ILF2 Regulates RNA Splicing of DNA Damage Response Genes to Confer Poor Prognosis in 1q21-Amplified Multiple Myeloma 20.33
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis 20.31
P120-catenin dependent glioma-cell networks drive growth and diffuse brain infiltration 20.29
RNA-Seq of polysome profiling fractions and whole cell lysates of UVB-irradiated N-TERT keratinocytes 20.24
MYOD Remodeling of the Genome Architecture during Myogenic Conversion of Somatic Cells 20.18
‘Naïve’ ESRRB+ iPSCs with the capacity for rapid neural differentiation 20.17
Rational targeting of RNA structure in SMN2 transcripts reverses Spinal Muscular Atrophy molecular phenotypes 20.13
RNASeq of Healthy Human Skin Tregs and CD4 Teffs versus Psoriatic Human Skin Tregs and CD4 Teffs 20.03
mRNA sequencing identifies differential gene expresssion profiles between ASCC3 knock-down cells and control cells 19.96
DUX4-induced histone variants H3.X and H3.Y mark DUX4 target genes for expression 19.95
DUX4-induced histone variants H3.X and H3.Y mark DUX4 target genes for expression (RNA-seq) 19.95
RNA-seq analysis reveals profound changes in transcript profiles between siCon- and siH19-transfected uterine smooth muscle cells (USMC) 19.86
RNA-Seq profiling of days 0, 7 and 18 kidney organoids differentiated from three separate vials of starting material 19.86
TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions 19.74
Monitoring Nivolumab binding as a method to clarify the residual therapeutic effects and to characterize the immune profile in antibody bound T cells in previously treated non-small cell lung cancer patients 19.67
RNA sequencing to study transcriptomic changes in DLD-1 (colorectal adenocarcinoma) cells exposed to soft polyacrylamide matrices (~2 kPa and ~55 kPa) for short time scale of 90 minutes 19.65
Transcriptional changes in lymphoma cells induced by LSD1 depletion 19.63
Histone demethylase LSD1 is required for germinal center formation and BCL6 driven lymphomagenesis 19.63
HNF1 regulates critical functions of the human epididymis epithelium. [RNA-Seq] 19.52
HNF1 regulates critical functions of the human epididymis epithelium. 19.52
Whole transcriptome profile of citrulline-specific B cells from patients with rheumatoid arthritis 19.48
Gene expression changes associated with resistance to tagraxofusp (SL-401) 19.18
Differential expression of genes in HCMV-infected fibroblasts regulated by the purinergic receptor P2Y2. 19.07
RNA-seq Transcriptome Analysis of AD169 and AD169-ΔUL26 infected MRC5 fibroblasts. 19.01
Differential Protein Occupancy Profiling of the mRNA Transcriptome 18.97
Folate modulation induces chromosomal instability and higher proliferation of immortalized human keratinocytes 18.9
RNA sequencing based comparative analysis of human hepatic progenitor cells and their niche from alcoholic steatohepatitis livers 18.9
CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression 18.85
Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [RNA-seq] 18.83
Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia 18.83
Human neutrophil genome during PMA- and E. coli encounter-induced activation 18.77
RNA-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation 18.77
ETV7 and interferon response 18.76
Impact of ETV7 activity on interferon-stimulated gene expression in 293T cells treated with interferon alpha 18.76
Transcriptomes analysis for the regulation of Z36 induced autophagy in HeLa cell death 18.73
Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during Epithelial-to-Mesenchymal Transition [ESRP KD] 18.71
ChIP-seq and RNA-seq from human lymphoma cell lines 18.71
RNA-seq data from human lymphoma cell lines 18.71
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice [HCT116_RNA-seq] 18.7
ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice 18.7
CD1c+ dendritic cell activation by Plasmodium falciparum-infected red blood cells 18.59
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits [mRNA-Seq] 18.46
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits 18.46
HeLa transcriptome induction by IFN gamma and indoleamine 2,3-dioxygenase (IDO) 18.46
Transcriptional Regulationand Chromatin Dynamics inHuman Epithelial Cell Differentiation (RNA-seq) 18.45
Transcriptional Regulationand Chromatin Dynamics inHuman Epithelial Cell Differentiation 18.45
RNA-Seq Analysis of Anacardic Acid Treated MCF7 and MDA-MB-231 Breast Cancer Cell Lines 18.23
Pancreatic cancer-derived exosomes induce apoptosis of T lymphocytes through the p38 MAPK signal transduction pathway 18.23
A role for p53 in the adaptation to glutamine starvation through the expression of Slc1a3 18.1
Analysis of the polyA+ RNA of LPS-treated human CD14+ monocytes 18.06
Identification of long noncoding RNAs regulated by p53 18.05
RNA-seq of MDA-MB-231 cells with TET1 knockout 17.93
Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury 17.82
Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury [human iPS] 17.82
Transcriptional profiling of MDA-MB-231 and its ρ0 cells (lacking mtDNA) after 48h arginine depletion by arginine deiminase (ADI). 17.75
RNA sequencing of 13 T-cell acute lymphoblastic leukemia patients (5 TCRAD-MYC translocated T-ALL_8TAL1-LMO2 T-ALL) 17.75
Transcriptome Profiling of Influenza A Virus-infected Lung Epithelial (A549) Cells with Lariciresinol-4-β-D-glucopyranoside Treatment 17.75
Bioinformatics analysis of transcriptome related to blood stasis syndrome in diabetes mellitus patients 17.73
Differentially Expressed Genes upon Knockdown of ZRANB1 or EZH2 in LM2 Cells 17.71
Mitochondrial unfolded protein response controls matrix pre-RNA processing and translation 17.69
CD8+ T cells regulate tumor ferroptosis during cancer immunotherapy 17.67
Nucleotide stress induction of HEXIM1 suppresses melanoma by modulating cancer cell-specific gene transcription [RNA-Seq2] 17.63
The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin Remodeling Complexes 17.51
BET-Bromodomain Inhibitors Engage The Host Immune System And Regulate Expression Of The Immune Checkpoint Ligand PD-L1 17.49
BET-Bromodomain Inhibitors Engage The Host Immune System And Regulate Expression Of The Immune Checkpoint Ligand PD-L1 [3mRNA-seq] 17.49
Transcriptional Profiling Identifies Novel Regulators of Macrophage Polarization [RNA-Seq] 17.46
Transcriptional Profiling Identifies Novel Regulators of Macrophage Polarization 17.46
Characterizing the contrasting roles of JMJD3 and UTX histone demethylases in T cell acute lymphoblastic leukemia [short_hairpins_RNA-seq] 17.42
RNA-seq in transgenic cells 17.34
Transcriptome profiling of self-renewing hESCs and multipotent mesoderm progenitor cells as a function of substrate stiffness 17.33
Effects of Inhibition of CDK8/19 Mediator Kinase by Senexin B in HCT116 cells treated with or without TNF-alpha 17.32
Assembly of methylated LSD1 and CHD1 drives AR-dependent transcription and translocation 17.23
Assembly of methylated LSD1 and CHD1 drives AR-dependent transcription and translocation [RNA-Seq] 17.23
Human cells contain natural double-stranded RNAs with potential regulatory capacity 17.18
The Promyelocytic Leukemia Zinc Finger Dependent Transcriptome during Human Endometrial Stromal Cell Decidualization 17.12
A Unique Epigenomic Landscape Defines Human Erythropoiesis (RNA-seq) 17.1
A myogenic double reporter human pluripotent stem cell line allows prospective isolation of skeletal muscle progenitors 17.09
Discovery of Drug Candidates that Inhibit and Eliminate Zika Virus Infection in Fetal and Adult Brain 16.98
RNA-sequencing analysis of CD4 T cells following ipilimumab therapy 16.95
Measuring the effect of MYC on transcription during the DNA double-strand break response by RNA-seq of newly synthesized transcripts 16.93
Effects of human adipose tissue-derived and umbilical cord tissue-derived mesenchymal stem cells in a dextran sulfate sodium-induced mouse model 16.93
Trans-differentiation of human adult peripheral blood T cells into neurons 16.88
RNA-sequencing analysis of glucose and acetate regulated transcripts in glioblastoma cells 16.85
RNA-seq analysis of RALD iPSCs after in vitro differentiation 16.74
Transcriptomic analysis of differential expressed genes of human tonsillar epithelial cells UT-SCC-60B in response to EV71 infection 16.74
Modulation of Indoleamine 2, 3-dioxygenase 1 Expression by Activated Human T cells in Breast Cancer Cells is Controlled by DNA Promoter Methylation 16.69
Next generation sequencing analysis of transcriptomes at different timepoints after chlorprothixene treatment in NB4 and Kasumi-1 cells 16.61
Gene expression profiling by RNA-seq in hTert-HME1 cell line treated with control or BRCA2 siRNAs and grown with or without EGF (epithelial growth factor) 16.59
Super-Enhancers Promote Transcriptional Dysregulation in Nasopharyngeal Carcinoma [RNA-seq] 16.55
Super-Enhancers Promote Transcriptional Dysregulation in Nasopharyngeal Carcinoma 16.55
Identification of the networks that regulate human monocytic myeloid-derived suppressor cell differentiation into inflammatory macrophages 16.37
Vitamin C Promotes Apoptosis in Breast Cancer Cells by Increasing TRAIL Expression 16.27
JQ1 +/- Vemurafenib in BRAF mutant melanoma (A375) 16.26
Different Temporal Effects of Ebola Virus VP35 and VP24 Proteins on Global Gene Expression in Human Dendritic Cells 16.03
Retinoic Acid Induced Transcriptional Repressor HIC1 is Required for Suppressive Function of Human Induced Regulatory T cells [RNA-Seq 1] 15.91
Transcriptional profiling of LS1034 cells treated with tepoxalin 15.9
mRNA profiles of JMJD3 overexpression- and JMJD3 knockout- HL-60 cells 15.86
RBM25 is a global splicing factor promoting inclusion of alternatively spliced exons 15.86
Single-cell analysis reveals stochastic regulation of type I IFN production by plasmacytoid dendritic cells and identifies host-derived environmental cues as amplifier of type I IFN production 15.85
Transcriptional profiling of CD45RO+CD57+CD4+ T cells 15.7
Integrin signaling regulates YAP/TAZ to control skin homeostasis 15.62
Immune-restricted epigenetic reader SP140 maintains macrophage identity and activation states critical to intestinal homeostasis [RNA-seq] 15.6
Immune-restricted epigenetic reader SP140 maintains macrophage identity and activation states critical to intestinal homeostasis 15.6
Effect of disulfiram treatment on pediatric high grade glioma 15.59
Steroid Receptor Coactivator-2 Regulated Transcriptome in Human Endometrial Stromal Cells 15.57
Comparative gene expression profiling of MHH-CALL4 cells subject to pharmacological JAK2 inhibitor treatment (ruxolitinib or CHZ868) or shRNA-mediated JAK2 depletion in vitro 15.57
JAK2 is dispensable for maintenance of JAK2 mutant B-cell acute lymphoblastic leukemias 15.57
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency 15.49
Transcriptional profiles of human blood dendritic cell (DC) subsets at steady state 15.46
In vivo generation of post-infarct human cardiac muscle by laminin-promoted cardiovascular progenitors [LN-521 or LN-521+LN-221] 15.34
Heterozygous and homozygous knock-in of PIK3CA-H1047R into human iPSCs 15.2
Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation (RNA-Seq) 15.14
Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation 15.14
CpG dinucleotides introduced into gag can inhibit HIV-1 gene expression by modulating pre-mRNA splicing 15.12
Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner 15.11
MeRIP sequencing reveals angiogenic properties of vascular endothelial cells 15.01
AMPK signaling for naïve pluripotency 15.0
AMPK signaling for naïve pluripotency [Hs] 15.0
Overexpression and knockdown experiment for circCSNK1G3 14.91
Identification of mRNAs with reduced ribosomal loading upon knock-down of translation factor DAP5 from hESCs. 14.89
Analysis of the Clustered Protocadherin (cPcdh) Locus in Human Pluripotent Stem and Derived Cells [RNA-seq II our of II] 14.88
JunB control of keratinocyte-mediated inflammation [RNA-seq] 14.75
RNA-Seq and ChIP-Seq reveals SQSTM1/p62 as a key mediator of JunB suppression of NF-kB-dependent inflammation 14.75
Transciptome profiling of NoDice and RNaseIII null cells prior to and after polyIC treatment 14.61
MAIT cell RNA sequencing 14.58
Human Adult Sorted Live Cell Erythroblasts transduced with Sigma non-targeting shRNA negative control (SHC002V) with puromycin selection RNAseq 14.57
An integrative network biology analysis identifies miR-508-3p as the determinant and a prognosis biomarker of the mesenchymal subtype ovarian cancer 14.51
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 [RNA-seq] 14.47
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 14.47
Global transcriptome analysis of WT versus HEB-/- hESCs 14.41
RNAseq of IL-36 stimulated primary human keratinocytes 14.34
EZH2 inhibitor efficacy in non-Hodgkin lymphoma does not require suppression of H3K27 mono-methylation [RNA-Seq] 14.24
EZH2 inhibitor efficacy in non-Hodgkin lymphoma does not require suppression of H3K27 mono-methylation 14.24
Primary Human B-cell Temporal Response to CD40L Stimulation 14.05
Enhancement of Arterial Specification in Human Pluripotent Stem Cell Cultures Promotes Definitive Hematoendothelial Program with Broad Myelolymphoid Potential 13.86
Gene expression changes upon drug withdrawal (A375/451Lu cell lines) 13.78
Effect of Toxoplasma gondii efector TgIST on global transcriptome of human foreskin fibroblasts (HFFs) upon type I IFN activation 13.65
Alternative splicing regulated by QKI and RBFOX1 promotes the mesenchymal cell state in breast cancer 13.52
RNA-sequencing in immortalized human mammary epithelial cells 13.52
Single-cell transcriptome of human epithelial cells reveals novel insights into early innate immune responses to influenza virus and viral antagonism 13.38
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells 13.33
SRSF1 role in cellular gene expression and splicing 13.32
Gene Expression Profiling of Cutaneous CD30+ Lymphoproliferative Disorders by RNA-seq 13.08
RNASeq of 4SU labelled nascent RNA in MV4;11 cell treated with DMSO, I-BET, SGC0946 and combination of I-BET and SGC0946 12.91
DAOY-NERT2 Notch/Hypoxia Transcriptome Analysis 12.9
Enhancement of direct reprogramming from fibroblasts to epithelial lineages by OVOL2-induced mesenchymal-to-epithelial transition [CAGE] 12.64
Enhancement of direct reprogramming from fibroblasts to epithelial lineages by OVOL2-induced mesenchymal-to-epithelial transition 12.64
Recruiting Endogenous ADARs with Antisense Oligonucleotides to Reprogram the Transcriptome 12.54
Cooperation of GRSF1 and the mitochondrial degradosome (hSuv3-PNPase complex) in degradation of mitochondrial RNA 12.39
Genes directly regulated by NF-κB in human hepatocellular carcinoma HepG2 [RNA-seq] 12.38
Genes directly regulated by NF-κB in human hepatocellular carcinoma HepG2 12.38
Re-Wiring 3D Nuclear Architecture by a Single Transcription Factor during Somatic Cell Reprogramming 12.36
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells [Endoderm RNA-seq and ChIP-seq data sets] 12.33
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells 12.33
Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference 12.24
Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference [RNA-Seq] 12.24
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process (RNA-seq) 12.18
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process 12.18
Effect of ILF3 depletion in HeLa cells on RNA steady state levels 12.16
Endometrial transcriptome and PGR cistrome in cycling fertile women [RNA-seq] 12.15
Endometrial transcriptome and PGR cistrome in cycling fertile women 12.15
RNA expression profiling of human mPB or CB-derived CD34+ cells treated with UM171 at different doses 12.08
RNA-seq of MCF10A cells and CAF 12.0
Comparative total RNA and mRNA sequencing and systems analysis reveals nascent transcriptional response to early HIV-1 infection in a CD4+ T cell line 11.95
Antibiotics induce polarization of pleural macrophages to M2-like phenotype in patients with tuberculous pleuritis 11.91
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 1] 11.6
Characterization of EZH2-deficient human embryonic stem cells [ChIP-seq and bulk RNA-seq] 11.54
Functional Cardiac Fibroblasts Derived from Human Pluripotent Stem Cells via Second Heart Field Progenitors 11.53
Dynamic gene regulatory networks of human myeloid differentiation [RNA-seq_siRNA] 11.39
ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion 11.27
DAOY-Notch1/Notch2 knockout: transcriptome comparison 11.26
RNA-seq of human foreskin fibroblast cells lacking RB, p130, and p107 treated with doxorubicin. 11.21
Early transcriptome profiling of microRNA-mediated neuronal reprogramming [RNA-seq timecourse] 11.21
Blocking expression of inhibitory receptor NKG2A overcomes tumor resistance to NK cells 11.13
ADAR1-editing of cellular and measles virus-derived duplex RNA 11.11
ADAR1-editing in HeLa, p150-KO and ADAR1-KO transcriptomes 11.11
GLIS3 Transcriptionally Activates WNT Genes to Promote Differentiation of Human Embryonic Stem Cells to Posterior Neural Progenitors 11.1
Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination 10.85
MicroRNA targetome analysis during HCMV infection 10.81
Dissection of estrogen receptor alpha signaling pathways in osteoblasts using RNA-sequencing 10.81
Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene (RNAseq) 10.75
Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene 10.75
Derivation and differentiation of haploid human embryonic stem cells 10.75
RNAseq of CD8+ and CD8- MAIT cells in human peripheral blood 10.73
Replication defective viral products exploit a cellular pro-survival mechanism to establish persistent infections 10.66
Transcriptome analysis of human immortilized astrocytes reprogrammed into dopaminergic neurons 10.62
DDX54 regulates transcriptome dynamics during DNA damage response [4SU-seq] 10.54
Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq 10.5
EZH2 and BCL6 cooperate to assemble CBX8-BCOR Polycomb complex to repress bivalent promoters, mediate germinal center formation and promote lymphomagenesis 10.44
EZH2 and BCL6 cooperate to assemble CBX8-BCOR Polycomb complex to repress bivalent promoters, mediate germinal center formation and promote lymphomagenesis [RNA-seq] 10.44
Functional separation of IL7Rα/KLRG1-defined CD8+ T cell populations in humans 10.31
Next Generation Sequencing for Quantitative Analysis of transcriptome of follicular compared to non-follicular CD8 T cells from HIV+ Lymph nodes 10.2
Therapeutic targeting of GCB- and ABC-DLBCLs by rationally designed BCL6 inhibitors 10.15
RNA seq_PDX2_SHP099 9.98
RNAseq of CCRF-CEM, a T-cell acute lymphoblastic leukemia cell line, after knockdown with 2 control hairpins and 6 hairpins targeting the PRC2 complex. 9.95
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors [RNA-Seq] 9.95
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors 9.95
Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells 9.94
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq] 9.92
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (wtRNA-Seq) 9.87
RNA deep sequencing analysis of human brain microvascular endothelial cells (ECs) treated with glioma-conditioned medium (glioma-CM) 9.73
The Developmental Heterogeneity of Human Natural Killer Cells Defined by Single-cell Transcriptome 9.68
Tissue-resident memory T cells mediate immune homeostasis in the human pancreas through the PD-1/PD-L1 pathway 9.64
Profiling of escape kinetics of viruses subjected to RNAi 9.62
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency (RNA-Seq) 9.57
Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency 9.57
DRB/GRO-Seq -/+ UV 9.52
RNA seq with AML (NB4) cells upon FTO inhibition 9.45
Genome-wide search for differentially expressed RNAs responsible for the effects induced by Ebola virus replication and transcription 9.38
Human Treg IL-12 stimulation 9.24
RNA-Seq Analysis in hES/ iPS cell-derived neuronal samples 9.13
PRRX2 and HEY2 double knock-down facilitates ASCL1-induced neuron conversion in human dermal fibroblasts. 9.04
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells [RNA-seq] 8.87
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells 8.87
Identification of renal resident macrophages across species [C1] 8.55
Transcriptomes change differerntly in differernt cancer cells upon EPZ-6438 treatment 8.51
Long non-coding RNA RP11-19E11.1 is an E2F1 target required for tumor cell proliferation and survival in basal breast cancer 8.51
Ambient O2 pressure induces NF-kB1/RelA related inflammatory response in human lung epithelial cells in vitro 8.5
Histone H3.1K27 methylation promotes NHEJ by antagonizing FANCD2 on Chromatin 8.41
YAP and MRTF-A, transcriptional co-activators of RhoA- mediated gene expression, are critical for glioblastoma tumorigenicity 8.39
Diarrhea in lymphocytic colitis: ERK1/2-dependent ENaC dysregulation and claudin-4-, -5- and -8-related barrier defects 8.35
RNA-sequencing analysis examining how the Vibrio cholerae MARTX toxin and its inidividual effector domains modulate the transcriptome of human intestinal epithelial cells. 8.34
Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans 8.31
Histone acetyltransferase p300 induces de novo super-enhancers to drive cellular senescence [RNA-seq] 8.31
Histone acetyltransferase p300 induces de novo super-enhancers to drive cellular senescence 8.31
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation 8.25
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation (RNA-seq data) 8.25
Transcriptomic analysis of ERR alpha orphan nuclear receptor 8.14
Transcriptional repression in hypoxia is mediated by the Sin3A histone deacetylase complex [RNA-seq] 7.83
RNA-seq study reveals unique transcriptome expression in systemic lupus erythematosus patients with distinct autoantibody profile 7.68
Transcriptome analysis of RANK-positive and RANK-negative luminal progenitor subpopulations in the human breast 7.67
Transcriptomic analysis of senescent cells upon EXOC7 knockdown. 7.66
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin 7.57
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity 7.57
The histone variant H3.3 G34W substitution in giant cell tumor of the bone link chromatin and RNA processing [RNA-seq] 7.52
Gene expression profiles of PD1-high, PD1-intermediate, and PD1-negative tumor-infiltrating CD8 T cells in hepatocellular carcinoma 7.44
SMYD2 specificly regulate BIX-01294 induced TP53 target genes revealed by RNA-Seq 7.43
Simultaneous and systematic analysis of cellular and viral gene expression during Enterovirus 71-induced host shutoff 7.35
CD161+ Tconv and Treg share transcriptome and display a migratory phenotype which is modified at the inflamed site 7.07
Deep sequencing of transcript levels in pluripotent stem cells and their differentiated derivatives in all three germ layers 6.92
Identification of monocyte-like precursors of granulocytes as a mechanism for accumulation of PMN-MDSC in cancer 6.8
Investigation about Monocytes in metastatic breast cancer patients under chemotherapy +/- Avastin 6.69
Gene expression profiles of 4-1BB+PD-1-high, 4-1BB-PD-1-high, and PD-1-int tumor-infiltrating CD8 T cells in hepatocellular carcinoma 6.6
The serine hydroxymethyltransferase-2 (SHMT2) initiates lymphoma development through epigenetic tumor suppressor silencing. 6.14
Gene expression profiling in follicular lymphoma (FL) samples and paired transformed follicular lymphoma (tFL) (n=6 samples) 6.14
mRNA expression data from ESCs derived by polar body transfer reconstructed embryos (PBTESCs) 6.04
Unbiased evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity 6.01
Evolutionary origin and functional divergence of stem cell homeobox genes in eutherian mammals 5.97
Human macrophages exhibit high activity to clear intracellular biovar Microtus strain of Y. pestis 5.92
Genome-wide transcriptional response to random aneuploidy in human cells 5.91
Total RNA-seq in ALL-SIL upon TLX1 knockdown 5.73
An epigenetic mark of polycomb response elements implemented by Trx/MLL/COMPASS 5.53
Generating Patterned Kidney Organoids for Studying Development and Diseases [bulk RNA-Seq] 5.33
A novel tumor-associated myeloid cell population inhibits antigen-specific immune responses in cancer patients 5.28
circ-ZNF609 regulates G1-S progression in Rhabdomyosarcoma 5.26
RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships (RNA-seq) 5.24
RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships 5.24
Functional Significance of U2AF1 S34F Mutation in Lung Adenocarcinomas 5.19
Multiplexed engineering and analysis of endogenous enhancer activity in single cells: Mosaic-Seq of beta-globin locus (pooled infection) 5.11
High resolution ChIP sequencing reveals novel bindings targets and prognostic role for SOX11 in Mantle cell lymphoma 4.88
High resolution ChIP sequencing reveals novel bindings targets and prognostic role for SOX11 in Mantle cell lymphoma (RNA-Seq) 4.88
Transcriptional profiling of PBMC from patients with aGvHD and patients without aGvHD after alloHSCT 4.79
Transcriptional changes during naturally-acquired ZIKA Virus infection render dendritic cells highly conducive to viral replication 4.55
Next Generation Sequencing (RNA-Sequencing) for the analysis of RUNX3 targets in H460, H460-ERT2-RUNX3 WT and H460-ERT2-RUNX3 MT(K94/171R mutation) 3.98
Gene expression profiles of primary human NK cells before and after expansion on CSTX002 feeder cells, with and without IL-21 stimulation 3.98
Expression analysis of THP1 cells following shRNA knock-down of RUVBL2 3.64
Neutrophils RNAseq from Generalised Pustular Psoriasis patients and healthy individuals 3.61
Dermal endothelial cells of type 2 diabetic patients 3.59
Transcriptomic profile of T cell acute lymphoblastic leukemia (T-ALL) cell from patients in CHCQMU 3.57
The global transcriptome analysis in the time course of hESC-derived cardiac differentiation 3.43
Transcriptome analysis of CD8+ T cells from healthy controls and patients wth CD46 deficiency 3.4
Analysis of transcriptomes of healthy donor and CD46 deficient CD8 T cells 3.4
Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease 3.36
Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease (human) 3.36
Reprogramming of dermal papilla cell intact gene signature with 3D culture and Lef-1 overexpression 3.29
Activation of Wnt/beta-catenin in Ewing sarcoma cells antagonizes EWS/ETS function and promotes phenotypic transition to more metastatic cell states 3.24
GATA2 is Dispensable for Generation of Hemogenic Endothelium But Required for Endothelial-to-Hematopoietic Transition 2.99
Ex vivo Dynamics of Human Glioblastoma Cells in a Microvasculature-on-a-Chip System Correlates with Tumor Heterogeneity and Subtypes 2.89
WNT signaling memory is required for ACTIVIN to function as a morphogen 2.85
Cell cycle positioning drives heterogeneity within the pluripotent stem cell compartment 2.82
RNA-Seq analysis of human neutrophils isolated by different protocols (Polymorphprep and negative selection) and incubated with and without in vitro cytokine stimulation 2.5
Parallel T-cell cloning and deep sequencing of the transcripts of human MAIT cells reveal stable oligoclonal TCRβ repertoire 2.44
mRNA sequencing of highly and lowly metastatic human colorectal cancer PDXs 2.27
CDK12 mediated transcriptional regulation in U2OS cells 2.26
RNA-Seq of SLNCR1 over-expression in the melanoma cell line A375 2.15
Transcriptomic analysis of human iPS cells derived from fragile X syndrome patients during neural differentiation 1.94
RNA-sequencing of highly pure synovial tissue macrophages reveals two distinct osteoarthritis subgroups that indicate different disease mechanisms. 1.68
CRISPR-Cas9 based screen for p53-bound enhancers that function in oncogene-induced senescence 1.63
Hsa-miR-139-5p/HNRNPF axis modulates gene-transcripts balance in thyroid cancer cells 1.62
RNA sequencing analysis of human podocytes reveals glucocorticoid regulated gene networks targeting non-immune pathways 1.5
Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors [Modifications - screen] 1.37
Targeting MTHFD2 in Acute Myeloid Leukemia 1.19
RNA sequencing reveals levamisole target genes PTPRZ1 and MDK and their links to interferon pathway in human podocytes 1.19
RNA sequencing of hiPSC derived neural crest populations from Familial Dysautonomia patients 1.12
Low-dose decitabine priming endows CAR T cells with enhanced and persistent anti-tumor potential by epigenetic reprogramming 0.7
Time series total RNA sequencing of a differentiation of human embryonic stem cells towards trophoblast lineage 0.68
Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in Chronic Lymphocytic Leukemia 0.68
Analysis of the senescent transcriptome upon expression of a ZFP36L1 phosphomutant 0.67
6mer seed toxicity in tumour suppressive microRNAs 0.66
Profiling of protrusion-enriched RNAs from human breast cancer cell line MDA-MB-231 0.37
Sex-specific gene expression differences are evident in human embryonic stem cells and during in vitro differentiation of human placental progenitor cells 0.0


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