Gene Query: PRAF2

Dataset Description Geneva Score
Transcriptional effect of ETV1 knockdown in melanoma cells 43.29
Transcriptomic profiling discloses molecular and cellular events related to neuronal differentiation in SH-SY5Y cells 33.78
Identification of microRNA-668 and microRNA-489 targets by RISC immunoprecipitation 28.29
miRNAs affected by antagomiR-17 treatment 24.53
Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes (ALK) 23.97
AZ1366: An inhibitor of tankyrase and the canonical Wnt pathway that limits the persistence of non-small cell lung cancer cells following EGFR inhibition 21.1
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [MB157_RNA-seq] 20.38
ASCL1 mediates neuronal differentiation of primary GBM stem cell cultures upon Notch signalling blockade [RNA-seq] 19.1
An integrative analysis of non-coding regulatory DNA variations associated with autism 18.55
Retroviral Replicating Vectors Deliver Cytosine Deaminase Leading to Targeted 5-FU-Mediated Cytotoxicity in Multiple Human Cancer Types 17.8
Genome wide transcriptome analysis of palbociclib or GSK3326595 treated A375 cells [Palbociclib_GSK_RNASeq] 17.59
SPOP mutation confers intrinsic BET inhibitor resistance in prostate cancer (BRD4_JQ1_RNA-seq) 17.16
The LRF/ZBTB7A transcription factor is a BCL11A-independent repressor of fetal hemoglobin 16.54
A Surveillance System of Active Enhancers by a RACK7-histone Demethylase Complex 16.18
Bromodomain-containing Protein 4 (BRD4) is Required for the Maintenance of a Mammary Epithelial Phenotype [RNA-Seq] 15.91
Bromodomain-containing Protein 4 (BRD4) is Required for the Maintenance of a Mammary Epithelial Phenotype 15.91
AUF-1 affected genes in human skin cells 15.58
IGF2BP3 controls cancer cell invasiveness by modulation RISC function 15.19
Impact of dieldrin on transcription in Jurkat T cells 13.93
Direct identification of endogenous SMG6 targets and a preferred motif spanning SMG6 cleavage sites by parallel analysis of RNA ends in human cells 13.73
Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics 12.97
Selective Inhibition of the Second Bromodomain of BET Family Maintains Anti-Tumor Efficacy and Improves Tolerability (22RV1 RNA-seq) 12.76
Selective Inhibition of the Second Bromodomain of BET Family Maintains Anti-Tumor Efficacy and Improves Tolerability 12.76
Selective Inhibition of the Second Bromodomain of BET Family Maintains Anti-Tumor Efficacy and Improves Tolerability (LNCaP RNA-seq) 12.65
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing 12.45
Gene expression profile in response to HIF-1α inhibition together with PPARα activation and the postnatal factors (T3, IGF-1 and dexamethasone) in hiPSC-CMs 12.26
Gene Expression Analysis of Melanoma Cells Treated with 6-Thio-dG In Vitro 12.06
An Alternative Splicing Event Amplifies Evolutionary Differences Between Vertebrates 12.04
Dynamic epigenetic remodeling underlies microRNA-mediated transdifferentiation of human adult fibroblasts into neuronal subtypes 11.97
Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone 11.73
Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone [IMR90_MCF7_RNA-Seq] 11.73
Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration 11.68
PHF20 readers link methylation of histone H3K4 and p53 with H4K16 acetylation 11.58
Spliceosomal disruption of the non-canonical BAF complex in cancer 11.43
The RNA-binding profile of Acinus, a peripheral component of the Exon junction complex, reveals its role in splicing regulation 11.38
Systems-level analyses reveal a convergent pathway for progression of diffuse astrocytoma and potential role for resveratrol in delaying high-grade transformation 10.58
Genome wide association study of bone size yields eleven loci that also affect height, bone density, osteoarthritis and fractures 10.03
Identification of Resistance Genes to BRAF Inhibitor in Melanoma by piggyBac Transposon Activation Mutagenesis Screen 9.94
GDF6-induced BMP signaling reawakens a neural crest identity in melanoma to prevent cell death and differentiation 9.9
Differential gene expression of human melanoma cells [RNA-seq] 9.9
Integrated analyses of early responses to radiation in glioblastoma identify new alterations in RNA processing and candidate targets to improve treatment outcomes 9.85
Human induced pluripotent stem cell-derived vocal fold mucosa mimics development and responses to smoke exposure 9.76
Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function 9.65
Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function [Rnase-Seq] 9.65
Evidence for HOXC6 as a potential molecular marker for non-small cell lung cancer 9.57
Transcriptome sequencing of human coronary artery smooth muscle cell under treatment of nitrated fatty acid 9.48
Effect of Hotair overexpression in human breast cancer cell lines 9.39
Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface 9.3
Synectin Promotes Fibrogenesis by Regulating PDGFR Isoforms Through Distinct Mechanisms 9.29
Dual modulation of neuron specific microRNAs and the REST complex promotes functional maturation of induced human adult neurons 9.25
RNA-seq of tumor cells following angiopellosis extravasation 9.15
Hyper-excitability of Neurons generated from Patients with Bipolar Disorder 9.04
Neonatal and adult human testis defined at the single-cell level 8.92
IQGAP3 interacts with Rad17 to activate the MRN/ATM/Chk2 signaling and promote radioresistance in lung cancer 8.88
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [RNA-Seq_human] 8.73
m6A-seq data analysis of control and PCIF1 knockdown transcriptome 8.69
In vitro differentiation of human embryonic stem cells into ovarian follicle-like cells 8.58
SIX4 acts as a master regulator of genes associated with the malignant phenotype of non-small cell lung cancer cells 8.58
Characterization of macrophage - cancer cell crosstalk in estrogen receptor positive and triple-negative breast cancer 8.41
Differentially expressed (DE) genes analysis in synovial fluid mesenchymal stem cells (SF-MSCs), SF-MSC derived iPSCs and iPSC derived MSCs (iPSC-MSCs) 8.4
mRNA expression profile of A549 cells and MSR-A549 cells with or without JQ1 treatment 8.17
A549 cells and MSR-A549 cells 8.17
Differential gene expression analysis between proliferating and quiescent human dermal fibroblasts 8.09
Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing 8.06
HDAC inhibition enhances the in vivo efficacy of MEK inhibitor therapy in uveal melanoma 8.01
Dual role of CSL (RBP-Jk) and NOTCH1 in CAF 7.97
Dual role of CSL (RBP-Jk) and NOTCH1 in cancer-associated fibroblast genome stability and expansion [RNA-seq] 7.97
ONECUT2 Drives Neuroendocrine Prostate Cancer Through Hypoxia Signaling 7.92
Next Generation Sequencing Facilitates Quantitative Analysis of transcriptomes of human cord blood CD34+ cells treated with HDAC5 inhibitor 7.84
7.83
Combined inhibition of STAT3 and DNA repair in palbociclib-resistant ER-positive breast cancer 7.81
Epigenomic profiling reveals the key function of histone H3K9 methylation during tumor transformation process 7.79
A pooled single-cell genetic screen identifies regulatory barriers in the continuum of the epithelial-to-mesenchymal transition 7.72
Transcriptomic profiling of mesenchymal stem cells (MSC) differentiation into mesangial cells 7.59
Next-generation sequencing of human dermal fibroblasts transdifferentiated towards the otic lineage 7.58
Identification of elevated A-to-I editing sites due to expression of an active ADAR3 mutant in human glioblastoma cells 7.54
Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0 7.27
mRNA sequencing of the mouse and human Hep-Orgs, Chol-Orgs and primary hepatocytes 7.23
Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases 7.14
Sensitivity and engineered resistance of myeloid leukemia cells to BRD9 inhibition (RNA-seq) 7.13
Sensitivity and engineered resistance of myeloid leukemia cells to BRD9 inhibition 7.13
Identification of Sin3B regulated genes during quiescence 7.12
Genome-wide analysis of ferroptosis related genes in liver cancer cells. 7.06
Endometrial epithelial cell transcriptome response to co-culture with adipose stromal cells 7.05
Generating Patterned Kidney Organoids for Studying Development and Diseases 7.02
Expression data for KDM1B knockdown in Glioma-Initiating Cells (GICs) 6.99
MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance (RNA-Seq) 6.94
MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance 6.94
RNA-Seq analysis of neurons derived from induced pluripotent stem cells reprogrammed from dental pulp 6.89
Comparative analysis of mesenchymal stem cells derived from amniotic membrane, umbilical cord and chorionic plate under serum-free condition 6.84
Effect of BRCA1 overexpression on genetic expressions of cervical cancer based on next generation sequencing 6.81
Effect of mitochondria deficiency on senescence-associated gene expression 6.7
Expression profiles of cultured human epididymis cells reveal the functional diversity of caput, corpus and cauda regions. 6.56
Differentiation enhances Zika virus infection in neuronal brain cells 6.56
Effect of SHP2 inhibition on hepatic stellate cell transcriptome. 6.55
Integration of genome-wide DNA methylome and transcriptome of human intestinal fibroblasts reveals novel candidate gene signatures in Crohn’s disease-associated fibrosis 6.47
A novel CRISPR-engineered prostate cancer cell line defines the AR-V transcriptome and identifies PARP inhibitor sensitivities. 6.41
Genome-wide expression analysis of human hTert immortalized fibroblasts after donwregulation of MCM7 6.4
Human embryonic stem cell, chimpanzee induced pluripotent stem cell, orangutan induced pluripotent stem cell, rhesus embryonic stem cell, and their derived cortical organoid RNA-seq 6.31
Detailed genomic and molecular characterization of Indian induced pluripotent stem cell lines 6.3
PML2-mediated thread-like nuclear bodies mark late senescence in Hutchinson–Gilford progeria syndrome 6.29
PML2‐mediated thread‐like nuclear bodies mark late senescence in Hutchinson–Gilford progeria syndrome [RNA-seq] 6.29
scRNASeq analysis of cycling cardiomyocytes 6.2
FOXP1 orchestration of ASD-relevant signaling pathways. 6.16
Profiling of protrusion-enriched RNAs from human breast cancer cell line MDA-MB-231 6.03
The acetyllysine reader BRD3R promotes human nuclear reprogramming and regulates mitosis 6.02
Binding to SMN2 pre-mRNA-Protein complex elicits specificity for small molecule splicing modifiers 5.99
LNCaP treated with iBET 5.93
SIRT6 regulates redox homeostasis in human mesenchymal stem cells by the transactivation of NRF2 5.88
Krüppel-like Transcription Factor-10 (KLF10) Provides a Negative Feedback Mechanism to Suppress TGFβ-Induced Epithelial-to-Mesenchymal Transition [RNA-Seq] 5.88
Krüppel-like Transcription Factor-10 (KLF10) Provides a Negative Feedback Mechanism to Suppress TGFβ-Induced Epithelial-to-Mesenchymal Transition 5.88
Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways [RNA-seq] 5.87
Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways 5.87
Paired Related Homeobox Protein 1 Regulates Quiescence in Human Oligodendrocyte Progenitors 5.81
Co-regulation of splicing by Rbfox1 and hnRNP M 5.81
Co-regulation of splicing by Rbfox1 and hnRNP M [hnRNPM k-d+Rbfox1 RNA-Seq] 5.81
Transcriptome analysis of SKI knock-out in HL60 cells 5.81
Combined cistrome and transcriptome analysis of SKI in AML cells identifies SKI as a co-repressor for RUNX1 5.81
Adaptation of the Kinome Promotes Resistance to BET Bromodomain Inhibitors in Ovarian Cancer 5.79
CENPA-Bound Genes and Transcriptional Profiling of CENPA-Depleted Prostate Cancer Cells 5.79
Transcriptional Profiling of CENPA-Depleted Prostate Cancer Cell Lines 5.79
Reconstruction of the Human Blood-Brain Barrier in vitro reveals a Pathogenic Mechanism of APOE4 in Pericytes 5.78
TFAP2C signalling in human fibroblasts 5.75
Implication of Long noncoding RNAs in the endothelial cell response to hypoxia revealed by RNA-sequencing. 5.75
RNA-seq analysis of CRISPR/Cas9 generated human BMPR2 deficient endothelial cell lines harboring mutations characteristic for hereditary pulmonary hypertension (HPAH) 5.74
Dermal fibroblasts play a central role in skin model protection against C. albicans invasion 5.7
Effect of CTCF and Rad21 knockdown on SLK cells and KSHV gene expression 5.64
Human muscle-derived CLEC14A-positive cells regenerate muscle independent of PAX7 5.56
Gene expression data from IMR90 control, IMR90 shRRM2 and shRRM2/shp16 5.55
Reconstitution of the human pancreatic niche stimulates differentiation of hESCs into beta cells and reveals new signals for pancreatic endocrine cell maturation 5.54
The role of FAM46C in myeloma cells [sequencing] 5.52
The role of FAM46C in myeloma cells 5.52
Effect of BCL11B overexpression on transcriptome of T-cell acute lymphoblastic leukemia (T-ALL) cells 5.52
Nickel induced transcriptional changes persist post exposure through epigenetic reprograming 5.47
A novel RAF kinase inhibitor with DFG-out binding mode: high efficacy in BRAF-mutant tumor xenograft models in the absence of normal tissue hyperproliferation 5.45
RNAseq of ribosomal fractionation to assess the effect of CBFB on translation regulation 5.44
A high-throughput screening strategy identifies regulators of alternative splicing via interaction with RNA G-quadruplexes 5.36
A bioinformatics approach reveals novel mechanisms of the OVOL transcription factors in the regulation of epithelial-mesenchymal cell programming and cancer progression. 5.34
Transcriptome of EBV-infected gastric cancer cell lines 5.34
Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration [RNA-seq2] 5.33
Characterizing the contrasting roles of JMJD3 and UTX histone demethylases in T cell acute lymphoblastic leukemia [short_hairpins_RNA-seq] 5.32
Gene expression profiles in response to proanthocyanidins in pancreatic cancer cells 5.29
Transcriptome-wide identification of CELF2 functional targets in T cells 5.28
FUS KO mRNA sequencing and anti-FUS RNA immunoprecipitation sequencing 5.28
Hyper-activation of HUSH complex function by Charcot-Marie-Tooth disease mutation in MORC2 5.22
FGF2 regulation of gene expression in stable inducible Neurons 5.22
Integrated epigenomic and transcriptomic profiling of terminal human erythropoiesis [TMCC2] 5.2
Steroid Receptor Coactivator-2 Regulated Transcriptome in Human Endometrial Stromal Cells 5.2
The SPOP-containing Complex Functions as an E3 Ligase for SETD2 to Regulate Gene-Specific H3K36me3-Coupled Alternative Splicing 5.15
Acriflavine inhibits the epithelial-to-mesenchymal transition in vitro in liver and pancreatic cancer cells (part of study on PANC1 cells treated with CoCl2) 5.07
Gene expression in mature and immature human ES-derived beta cells, and sorted beta-cells from adult islets 5.06
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations 5.05
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations [RNA-Seq] 5.05
Global Gene Expression analysis of CUTLL1 cell lines after treatment with Perhexiline 5.03
m6A-dependent regulation of messenger RNA stability 5.03
Parvovirus B19 NS1 protein induces cell cycle arrest at G2 phase 5.0
Grainyhead-like 2 is essential for androgen receptor expression and activity in prostate cancer 5.0
Grainyhead-like 2 is essential for androgen receptor expression and activity in prostate cancer (RNA-seq) 5.0
Reprogramming by de-bookmarking somatic transcriptional program via targeting the BET bromodomains 4.99
RNA-seq of MCF10A cells and CAF 4.95
Quantitative comparison between cellular mRNAs and exosomal mRNAs in human iPSC-derived motor neurons 4.92
Response of triple negative breast cancer to BAZ2A/B inhibition and BET bromodomain inhibition alone and in combination 4.92
Response of triple negative breast cancer to BAZ2A/B inhibition and BET bromodomain inhibition alone and in combination (RNAseq) 4.92
In Vitro and In Vivo Modulation of Alternative Splicing by the Biguanide Metformin. 4.9
RNA-seq of cancer-associated fibroblasts (CAF) treated with PBS or extracellular vesicles (EV) from MCF10A or MDA-MB-231 cells 4.9
Convergent roles of ATF3 and CSL in chromatin control of CAF activation [RNA-seq] 4.88
Convergent roles of ATF3 and CSL in chromatin control of CAF activation 4.88
Synergy from Gene Expression and Network Mining (SynGeNet) method predicts genotype-specific synergistic drug combinations in melanoma 4.83
Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells 4.81
Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells [RNA-seq] 4.81
Recapitulating and Deciphering Tumor-stroma Microenvironment by Using a “LEGO” like 3D printed microfluidic device 4.81
Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines (mRNA-Seq) 4.76
Next Generation Sequencing of Transcriptomes of Cutaneous Melanocytes and Metastatic Melanoma Cell Lines 4.76
ELF4 is a target of miR-124 and promotes neuroblastoma proliferation and undifferentiated state 4.75
The E3 ubiquitin ligase HectD1 suppresses EMT and metastasis by targeting the +TIP protein ACF7 for degradation 4.75
Total RNA sequencing of APC mutant and wt colonic organoids 4.74
Involvement of Condensin in Cellular Senescence through Gene Regulation and Compartmental Reorganization 4.7
Statins modulate endothelial transcriptional profile by inhibiting EZH2 4.66
RNA-sequencing WT vs SOCS3 knockout Glioblastoma stem-cells 4.62
Analysis of transcriptional regulation by Myt1 and Myt1l 4.53
ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence [RNA-Seq] 4.52
ATRX is necessary for cellular senescence and represses HRAS to drive cells from quiescence into senescence 4.52
Splicing and gene expression changes in human MDAM-MB231 breast cancer cells with TRA2B knockdown 4.5
Changes in chromatin accessibility and gene expression induced by overexpression of ONECUT transcription factors 4.48
Profiling of gene expression using RNA-Seq in fibroblasts, iPSCs, iPSC-derived neurons and cells overexpressing Onecut transcription factors 4.48
Proliferation pause as an early blockade of human cellular reprogramming toward pluripotency [RNA-seq analysis] 4.48
UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons 4.44
RNA-Seq analysis RPE1 cells following exposure to Nutlin-3 to identify target genes of p53 [tpo12] 4.42
A transcriptome dataset revealing the molecular features of breast cancer stem cells 4.38
Patterned human microvascular grafts enable rapid vascularization and increase perfusion in infarcted hearts 4.38
Ambient O2 pressure induces NF-kB1/RelA related inflammatory response in human lung epithelial cells in vitro 4.38
Transcriptome analysis in HT29 and SW480 cells depleted of Prdx2 4.37
Analysis of Combined Transcriptomes Identifies Gene Modules Differentially Responding to Pathogenic Stimulation in Vascular Smooth Muscle and Endothelial Cells 4.37
transcriptomic profiling of HEK293 cells upon individual knockdown of the splicing factors RBM17, U2SURP or CHERP 4.33
Spatially Constrained Tandem Bromodomain Inhibition Bolsters Sustained Repression of BRD4 Transcriptional Activity for TNBC Cell Growth 4.27
Transcriptome analysis of U87 cells upon LINC00152 knockdown 4.27
Global transcriptional changes in U87MG glioblastoma cells upon shRNA-mediated TRIM52 knockdown 4.27
Differential analysis of HOXA1 in adult cells at isoform resolution by RNA-Seq [Illumina] 4.26
Differential analysis of gene regulation at transcript resolution by RNA-Seq 4.26
Genome-wide functional assessment of enhancer activities in the human genome 4.26
RNA-Seq analysis of 4N and 2N RPE1 cells following polyploid induction via cytokinesis failure or Aurora kinase inhibition [tpo3] 4.25
A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters 4.24
Transcriptome-wide study of the response of human trabecular meshwork cells to the substrate stiffness increase 4.24
Analysis Of The TGFb-Induced Program In Primary Airway Epithelial Cells Shows Essential Role Of NF-kB/RelA Signaling Network In Type II Epithelial Mesenchymal Transition 4.24
Generation of trichogenic adipose-derived stem cells by expression of three factors 4.24
Robust generation of honemogeneous midbrain organoids with in vivo–like cellular composition facilitates neurotoxin-based Parkinson’s disease modeling 4.14
Locally transplanted human urine-induced nephron progenitor cells contribute to renal repair in mice kidney with diabetic nephropathy 4.13
INO80 governs super-enhancer-mediated oncogenic transcription and tumor growth in melanoma 4.09
INO80 governs super-enhancer-mediated oncogenic transcription and tumor growth in melanoma [RNA-seq] 4.09
Wide-scale analysis of alternative polyadenylation (APA) associated with proliferation and transformation using 3'-Seq 4.08
Transcriptomic hallmarks of tumor plasticity and stromal interactions in brain metastasis [MultiDisease] 4.01
Regulation of highly expressed hCINAP on translatome 4.0
Small-molecule targeting of brachyury transcription factor addiction in chordoma 3.99
The dynamics of cellular response to therapeutic perturbation using multiplexed quantification of the proteome and transcriptome at single-cell resolution 3.99
Loss of the Chr16p11.2 candidate gene QPRT leads to aberrant neuronal differentiation 3.97
Modeling human brain evolution using induced pluripotent stem cells: comparative analysis of neuronal development in humans and chimpanzees 3.97
The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition [RNA-Seq] 3.95
The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition 3.95
Gene expression profiling of papillary thyroid cancer from central and invasive regions 3.95
Molecular Pathology of adverse local tissue reaction caused by metal-on-metal implants 3.95
Expression changes in melanoma cell lines under BRAFi treatment timepoints [RNA-Seq.CellLine.batch4] 3.93
Species-specific maturation profiles of human, chimpanzee and bonobo neural cells 3.89
Non-synchronized cell cycle transcriptomics in U2OS and HeLa cancer cells 3.89
Bromodomain inhibition of the co-activators CBP/EP300 facilitates reprogramming 3.88
Bromodomain inhibition of the co-activators CBP/EP300 facilitates reprogramming (RNA-seq fibroblasts) 3.88
Sequencing Universal Human Reference RNA by Smart-seq and early barcoding library preparation methods 3.88
The Human Testis Cell Atlas via Single-cell RNA-seq 3.87
Characterization of parental and rociletinib-resistant derived H1975 cell lines 3.87
Identification of a unique subtype of lung squamous cell carcinoma defined by SOX2 and a neural differentiation factor BRN2 3.82
Identification of a unique subtype of lung squamous cell carcinoma defined by SOX2 and a neural differentiation factor BRN2 [RNA-seq] 3.82
Examining serotonergic neuron differentiation from human iPSCs 3.8
Evolution of a transcriptional regulator from a transmembrane nucleoporin 3.77
RNA-seq in HepG2 and IMR90 cells 3.77
Genome-wide RNA-seq from GALNT14-depleted and GALNT14 overexpressing MDA-MB-231 LM2 and Par cells 3.76
Exploring ILF2 regulatory genes by next-generation sequencing 3.76
RNA-sequencing based transcriptome-wide expression profiling of Cynomolgus monkey and human IPSCs in vitro differentiated into endothelial cells 3.75
Over expression of Receptor Activity Modifying Protein 2 in HEK293T cells 3.75
EWS-Fli and LNC regulated genes in comparison to GFP samples 3.73
RNA-seq of human aneuploid cell lines with Trisomy 21 3.7
Transcriptome profiling of Cryptosporidium parvum infected lung and intestinal organoids 3.7
Dynamics of Proteo-Transcriptomic Response to HIV-1 Infection 3.69
Gene expression signatures of innate lymphoid cells from human blood 3.68
Gene expression alterations associated with acquired-resistance to the CDK4/6 inhibitor palbociclib [Palbociclib resistance_RNASeq] 3.68
Tricyclic Antidepressants Induce Inactivation of Hepatic Stellate Cell (HSC) Myofibroblasts 3.68
Integrative Genomic Analysis Reveals Widespread Enhancer Regulation by p53 in Response to DNA Damage 3.67
Gene expression of thyroid cancer cell lines 3.65
hTERT promotes cell adhesion and migration independent of telomerase activity 3.63
Global unleashing of transcription elongation waves in response to genotoxic stress restricts somatic mutation rate 3.63
Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner 3.62
CDK4/6 inhibitor resistance in prostate cancer 3.6
Global transcriptional profiling changes upon knockdown of LKB1 in human glioblastoma cell lines 3.58
Ex-vivo Human Hematopoietic Stem Cell Expansion Requires Coordination of Cellular Reprogramming with Mitochondrial Remodeling and P53 Activation 3.55
RNA-sequencing and MeDIP-sequencing of shSRC-1 and shNT tamoxifen treated LY2 cells 3.52
RNA-sequencing of shSRC-1 and shNT tamoxifen treated LY2 cells 3.52
Luminal lncRNAs Regulation by ERα-controlled Enhancers in a Ligand-independent Manner in Breast Cancer Cells 3.51
Gene expression changes in HSV-1 infected HeLa cells with knockdown of B2M 3.48
Bromodomain protein BRD4 is a transcriptional repressor of autophagy and lysosomal function 3.47
ZEB1 insufficiency causes corneal endothelial cell state transition and altered cellular processing 3.47
Epidermal growth factor activates β-catenin via integrin-linked kinase to control proliferation of mesenchymal stromal cells. 3.44
Gene expression profile in endometrial organoids cultured in normal follicular phase vs PCOS-like hormone profile 3.43
Gene expression profile of regenerated CD8αα T cells and CD8αβ T cells from LMP2 T-iPSCs 3.43
Discovering the anti-cancer potential of non-oncology drugs by systematic PRISM profiling 3.41
Transcriptomic analysis of effect of oncolytic measles virus (MV) on transformed and non-transformed bone marrow-derived mesenchymal stem cells (MSCs) 3.38
Targeted Apoptosis of Senescent Cells Restores Tissue Homeostasis in Response to Chemotoxicity and Aging 3.37
Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells 3.35
Transcriptomic analyssis following EHMT1/2 inhibition 3.35
miR941 overexpression experiment 3.34
Oncogenic changes and EMT in normal human bile duct epithelial cells are caused by parasite-derived materials and N-nitrosodimethylamine 3.31
Novel Targeting of Transcription and Metabolism in Glioblastoma 3.27
Pseudotime Ordering of Single Human Beta-Cells Reveals States of Insulin Production and Unfolded Protein Response 3.27
Transcriptional Targeting Of Oncogene Addiction In Medullary Thyroid Cancer [RNA-Seq] 3.26
Transcriptional Targeting Of Oncogene Addiction In Medullary Thyroid Cancer 3.26
Generation and persistence of human tissue-resident memory T cells in lung transplantation 3.22
Activation of a SOX2-dependent transcriptional regulatory circuit drives glioblastoma. 3.22
Mechanosensitive ion channel regulates tissue stiffening to promote glioma aggression 3.22
Highly-motile versus unsorted MDA-MB-231 breast cancer cells 3.22
A rare subpopulation of melanoma cells with low expression of metastasis suppressor NME1 has a neural crest-like phenotype and is highly metastatic in vivo 3.21
RNA sequencing of human pancreatic cancer cell lines 3.2
Transcriptomic hallmarks of tumor plasticity and stromal interactions in brain metastasis 3.19
PANC-1 and AsPC-1 human pancreatic carcinoma cells under hypoxia, nutrient starvation and low pH culture condition 3.17
Gene expression in PANC-1 and AsPC-1 human pancreatic carcinoma cells under hypoxia, nutrient starvation and low pH culture condition. 3.17
RNA-seq of HDAC2-disrupted 293FT cells by CRISPR-Cas9 3.16
Canonical and non-canonical regulatory roles of androgen receptor variant 7 in prostate cancer 3.15
CDK4/6 inhibitors target SMARCA4-determined cyclin D1 deficiency in hypercalcemic small cell carcinoma of the ovary (I) 3.11
Mitochondrial 3243A > G mutation confers pro-atherogenic and pro-inflammatory properties in MELAS iPS derived endothelial cells 3.1
Effect of hypoxia and TGFβ1 on gene expression in HPF fibroblast cells 3.1
A transcriptional regulatory network connects mitochondrial biogenesis and metabolic shift with stem cell commitment to hepatic differentiation 3.1
Cistromic re-programming by truncating GATA3 mutations promotes mesenchymal transformation in vitro, but not mammary tumour formation in mice [RNA-seq] 3.09
Cistromic re-programming by truncating GATA3 mutations promotes mesenchymal transformation in vitro, but not mammary tumour formation in mice 3.09
Early response of human ovarian and fallopian tube surface epithelial cells to norepinephrine 3.09
Transcriptome of diurnal human blood neutrophils 3.07
12hr 5-FU treatment vs. DMSO in SJSA cells (from 'A kinase independent role for CDK19 in p53 response') 3.07
Direct interaction of MYCN and p53 regulate transcriptional responses in neuroblastoma [RNA-Seq] 3.06
Direct interaction of MYCN and p53 regulate transcriptional responses in neuroblastoma 3.06
SPOP mutation confers intrinsic BET inhibitor resistance in prostate cancer 3.05
Effects of NSUN2 deficiency on the mRNA 5-methylcytosine modification and gene expression profile in HEK293 cells (RNA-Seq) 3.03
A novel lncRNA lncRNA-AK096729 promotes colorectal carcinogenesis and glucose metabolism by stabilizing and specifying the transcription modification pattern of c-Myc 3.03
Membrane Metallo-Endopeptidase (Neprilysin) Regulates Inflammatory Response and Insulin Signaling in White Preadipocytes (RNA-Seq) 3.03
Membrane Metallo-Endopeptidase (Neprilysin) Regulates Inflammatory Response and Insulin Signaling in White Preadipocytes 3.03
KSHV vIRF3 promotes angiogenesis of lymphatic endothelial cells (LECs) 3.02
Gene expression profiles in HMC3 cells after exposure to ketamine or its active metabolites: 2R6R-HNK and 2S6S-HNK 2.97
The MEF2B Regulatory Network 2.95
The MEF2B Regulatory Network - RNA-seq data 2.95
Transcriptomic Profiling of Posterior Polymorphous Corneal Dystrophy 2.95
Gene expression in GBM with Cav3.2 inhibition 2.92
Mutational landscape of splicing genes and functional consequences across 33 cancer types 2.91
Enhancement of direct reprogramming from fibroblasts to epithelial lineages by OVOL2-induced mesenchymal-to-epithelial transition [CAGE] 2.85
Enhancement of direct reprogramming from fibroblasts to epithelial lineages by OVOL2-induced mesenchymal-to-epithelial transition 2.85
Profiling gene expression changes in primary ovarian tumors compared to matched normal fallopian tubes 2.83
RNA sequencing of ESC/iPSC-derived purified PAX6-GFP neural progenitors form control and Phelan-Mcdermid patients 2.81
Identification of atheroprone shear stress responsive regulatory elements in endothelial cells 2.81
The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling [RNA-seq] 2.79
The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling 2.79
GATA3 enhances the neurogenic potential of primary human astrocytes after traumatic injury [exp2] 2.78
Identification of a unique gene expression signature in mercury and 2,3,7,8-tetrachlorodibenzo-p-dioxin co-exposed cells 2.78
Efficient direct reprogramming of c-Kit− mature amniotic cells into endothelial cells by ETS factors and TGFβ suppression 2.77
Differential expression of pancreatic cancer PANC1 cells treated with pilocarpine 2.75
In vivo genome editing restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers 2.74
MYOD Gene Expression Regulation during Myogenic Conversion of Fibroblasts 2.73
CRISPR activation of long non-coding RNAs transiently expressed during cortical neuron differentiation associated with Field, et al, Stem Cell Reports 2018 2.71
Engineered human pluripotent stem cell-derived intestinal tissues with a functional enteric nervous system 2.71
Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma 2.7
Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma (RNA-Seq) 2.7
XBP1s Activation Globally Remodels N-Glycan Structure Distribution Patterns 2.63
Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics. [RNA-seq] 2.57
Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics. 2.57
Histone Demethylases KDM3A and KDM4C regulate mesenchymal stromal cell senescence and bone aging through condensin-mediated heterochromatin organization 2.57
Prolyl Hydroxylase Substrate Adenylosuccinate Lyase Is An Oncogenic Driver In Triple Negative Breast Cancer 2.57
Epigenetic silencing of the tumor suppressor RASSF4 favors multiple myeloma progression 2.53
RNA-seq of cultured human kidney peritubular microvascular endothelial cells following exposure to cyclosporine A 2.52
Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor 2.51
BBBomics - Human Blood Brain Barrier Transcriptomics Hub 2.5
BBBomics - Human Blood Brain Barrier Transcriptomics Hub [RNA-seq] 2.5
Transcriptomic analysis of senescent cells upon PTBP1 knockdown. 2.46
Polysome profiling RNAseq of cells transfected with an oligonucleotide targeting the ES6S region of the 40S subunit 2.46
Fisetin induces autophagy in pancreatic cancer cells via endoplasmic reticulum stress- and mitochondrial stress-dependent pathways 2.46
Exploiting Prmt5-orchestrated intron detention signatures to treat splicing-addicted malignant glioma tumors 2.45
Transcriptome analysis of human reninomas as an approach to understanding juxtaglomerular cell biology 2.44
Synaptic dysfunction in human neurons with Autism associated deletions in PTCHD1-AS 2.44
Transcriptome analysis of kidney organoids 2.41
Genome wide characterization of a STAT1-independent antiviral and immunoregulatory transcriptional program induced by IFNβ and TNFα reveals non-canonical STAT2 and IRF9 pathways 2.4
A549 cell transcriptome responses to infection with H7N9 influenza virus 2.35
KDM1A confers invasive and metastatic attributes in lung adenocarcinoma by modulating a non-canonical Integrin ß3-KRAS signaling pathway 2.34
FOXP2's impact on the primate transcriptome 2.31
Heterogeneous nuclear ribonucleoprotein C1/C2 links transcriptional and splicing actions of 1,25-dihydroxyvitamin D 2.3
Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma 2.24
Acquired resistance to MEK-CDK4/6 inhibitor combinations in cutaneous melanoma 2.23
Postmortem Cortex Samples Identify Distinct Molecular Subtypes of ALS: Retrotransposon Activation, Oxidative Stress, and Activated Glia [shRNA] 2.2
The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders 2.19
The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders [lnc-Nr2f1 overexpression] 2.19
Does osteogenic potential of clonal human bone marrow mesenchymal stem/stromal cells correlate with their vascular supportive ability? 2.17
LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression 2.17
A RUNX2-mediated Epigenetic Regulation of the Survival of p53 Defective Cancer Cells 2.16
The Glioma-Infiltrating T Cell Receptor Repertoire 2.15
Transcriptional profile in dermal fibroblasts from patients with collagen VI related muscular dystrophy 2.13
RNAseq of CCRF-CEM, a T-cell acute lymphoblastic leukemia cell line, after knockdown with 2 control hairpins and 6 hairpins targeting the PRC2 complex. 2.11
Effect of Toxoplasma gondii efector TgIST on global transcriptome of human foreskin fibroblasts (HFFs) upon type I IFN activation 2.08
Differential YAP expression in glioma cells induces cell competition and promotes tumorigenesis 2.07
Characterization and therapeautic application of mesenchymal stem cells with neuromesodermal origin from human pluripotent stem cells 2.06
Regulation of Lipids is Central to Replicative Senescence 2.03
The expression of genes encoding palmitoylated proteins in axonal and synaptic compartments is affected in CLN1/PPT1 transfected neuronal cells 2.02
RNA-Seq expression profiling of hepatocellular carcinoma and adjacent non-tumor liver tissues 1.98
Transcriptome analysis of human cumulus cells reveals hypoxia as the main determinant of follicular senescence. 1.97
A Primate lncRNA Mediates Notch Signaling During Neuronal Development by Sequestering miRNA [SHSY5Y cells] 1.92
RNA transcriptome analysis of IRF1 and IRF3 knockout in immortalized primary hepatocytes infected with hepatitis A virus 1.92
Stable oxidative cytosine modifications accumulate in cardiac mesenchymal cells from Type2 diabetes patients: rescue by alpha-ketoglutarate and TET-TDG 1.92
Stable oxidative cytosine modifications accumulate in cardiac mesenchymal cells from Type2 diabetes patients: rescue by alpha-ketoglutarate and TET-TDG functional reactivation [human cells RNA-seq] 1.92
Single cell transcriptome of peritoneal cells 1.9
NEUROD1 dependent gene regulation in murine pancreatic endocrine cells and human stem cell derived insulin producing cells 1.89
Rna-seq transcriptome data for insulin-GFP+ cells differentiated from NEUROD1 knock out and NEUROD1+/+ control human embryonic stem cells. 1.89
Induction of Sertoli-like cells from human fibroblasts by NR5A1 and GATA4 1.89
Receptor tyrosine kinase signaling promotes post-embryonic morphogenesis and survival of glia and neural progenitor cells 1.89
Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation 1.85
Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [bulk RNA-Seq] 1.85
Prostaglandin E2 inhibits pro-fibrotic function of human pulmonary fibroblasts by disrupting Ca2+-signaling 1.8
Regulation of poly(A) tail and translation during the somatic cell cycle 1.79
Genome-Wide Specificity of DNA-Binding, Gene Regulation, and Chromatin Remodeling by TALE- and CRISPR/Cas9-Based Transcription Factors 1.77
RNA-Seq of SLNCR1 over-expression in the melanoma cell line A375 1.74
Expression changes in MAPKi resistant M229 melanoma lines co-cultured with PD-1 overexpressing HEK293T cells [CellLine.FPKM.batch5] 1.74
Progesterone Receptor- and FOXO1-dependent transcriptomes decidualized human endometrial stromal cells 1.73
Progesterone receptor transcriptome and cistrome in decidualized human endometrial stromal cells 1.73
FOXO1 is required for binding of PR on IRF4, novel transcriptional regulator of endometrial stromal decidualization 1.73
OBESITY IS ASSOCIATED WITH IMPAIRED EXPRESSION OF THE GLYCOSYLTRANSFERASE EOGT IN DECIDUALIZING ENDOMETRIUM 1.7
Pre-mRNA Splicing is Facilitated by an Optimal RNA Polymerase II Elongation Rate 1.7
Next-generation sequencing reveals a novel role of lysine-specific demethylase 1 in adhesion of rhabdomyosarcoma cells [RNA-seq] 1.66
Next-generation sequencing reveals a novel role of lysine-specific demethylase 1 in adhesion of rhabdomyosarcoma cells 1.66
Single-cell transcriptome of human epithelial cells reveals novel insights into early innate immune responses to influenza virus and viral antagonism 1.65
Histone H3.1K27 methylation promotes NHEJ by antagonizing FANCD2 on Chromatin 1.65
X-Ray induced DNA-Hydroxymethylation changes 1.65
Small molecule inhibition of ERK dimerization prevents tumorigenesis by Ras-ERK pathway oncogenes 1.64
Hyperactive mTOR and MNK1 phosphorylation of eIF4E confer tamoxifen resistance and estrogen independence through selective mRNA translation reprogramming 1.63
Inhibition of TAZ contributes radiation-induced senescence and growth arrest in glioma cells 1.59
ENCODE Cold Spring Harbor Labs Long RNA-seq 1.59
Redifferentiation of expanded human islet β cells by inhibition of ARX 1.56
GATA3 enhances the neurogenic potential of primary human astrocytes after traumatic injury [exp1] 1.56
RNA-seq of synchronized S phase or G2 phase cells treated with an ATR inhibitor 1.54
Thymine DNA Glycosylase as a novel target for melanoma: effect of TDG silencing on gene expression in SK-mel-28 melanoma cells 1.53
RNA-seq analysis reveals profound changes in transcript profiles between siCon- and siH19-transfected uterine smooth muscle cells (USMC) 1.5
RNA sequencing of GLO1-depleted MDA-MB-231 breast cancer cells 1.47
Transcriptional repression in hypoxia is mediated by the Sin3A histone deacetylase complex [RNA-seq] 1.45
Cystathionine-β-Synthase Promotes Colon Carcinogenesis 1.39
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process (RNA-seq) 1.36
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process 1.36
RNAseq of cell lines with knocked in ESR1 mutations 1.35
RNA-seq of H1299 cells in which either PRKCI or SOX2 was silenced by validated lentiviral shRNA constructs 1.34
A novel compound that blocks HIV-1 replication inhibits the splicing regulatory function of SRSF10 1.3
Global transcriptome analysis in the MYCN-amplified neuroblastoma cell line IMR5-75 upon inducible MYCN-knockdown 1.29
Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins 1.28
Transcriptional profiling of SF295 cells following MTF1 knockout by CRISPR/Cas9 1.27
Transcriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and chemoresistance 1.26
Modeling and characterization of the dynamic gene regulatory networks underlying cancer drug resistance based on time-course RNA-seq data 1.25
PolyA-sequencing in IMR-32 cells treated with THZ531 or DMSO 1.25
Dissection of estrogen receptor alpha signaling pathways in osteoblasts using RNA-sequencing 1.23
Oncolytic reactivation of KSHV as a therapeutic approach for primary effusion lymphoma: RNA-sequencing of PEL cell lines during KSHV reactivation 1.19
RNA-Sequencing of HUVEC treated with Tie2 activating antibody 1.16
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation (RNA-seq data) 1.14
Stochastic genome - nuclear lamina contacts are linked to histone H3K9 dimethylation 1.14
Rescue of Fragile X syndrome neurons by DNA methylation editing of the FMR1 gene [RNA-seq] 1.12
Rescue of Fragile X syndrome by DNA methylation editing of the FMR1 1.12
RNA-seq characterization of downstream effects of upregulating SMN2 via down-regulating PRC2 or blocking the PRC2:SMN-AS1 interaction with a mixmer oligonucleotide 1.05
Transcriptome-wide discovery of microRNA binding sites in human brain by Ago2 HITS-CLIP 1.04
Dissecting neural differentiation regulatory networks through epigenetic footprinting 0.99
Single-cell Transcriptomics reveals multi-step adaptations to endocrine therapy 0.96
YTHDF1 Amplifies Wnt/β-Catenin Signaling to Promote Intestinal Stemness 0.94
MYOD Remodeling of the Genome Architecture during Myogenic Conversion of Somatic Cells 0.94
Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia (RNA-Seq of HSCe) 0.94
The transcriptomic landscape of MAIT cell development in the thymus (NN41 RNAseq data set) 0.92
c-Jun promotes cell migration and drives expression of the motility factor ENPP2 in soft tissue sarcomas [RNA-Seq] 0.89
c-Jun promotes cell migration and drives expression of the motility factor ENPP2 in soft tissue sarcomas 0.89
ELAVL2-regulated transcriptional networks in human neurons link atlernative splicing, autism and human neocortical evolution 0.89
Identification of a Cell-of-Origin for Fibroblasts Comprising the Fibrotic Reticulum in Idiopathic Pulmonary Fibrosis 0.89
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques 0.85
CRISPR-Cas9 based screen for p53-bound enhancers that function in oncogene-induced senescence 0.84
Endometrial transcriptome and PGR cistrome in cycling fertile women [RNA-seq] 0.84
Endometrial transcriptome and PGR cistrome in cycling fertile women 0.84
Re-Wiring 3D Nuclear Architecture by a Single Transcription Factor during Somatic Cell Reprogramming 0.83
Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk 0.83
Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk [RNA-seq] 0.83
Impact of DNA demethylation agents (5-azacytidine or vitamin C) on gene expression in glioblastoma HSR-GBM1 cells 0.82
Induced DNA demethylation, genome instability and transcription 0.82
RNA-SEQ assay for wild type and CRISPR induced endoglin knockout human pulmonary artery smooth muscle cells (PASMC) 0.79
Effects of darunavir upon gene expression in kidney tubular cells after transduction with HIV or EGFP-control lentivirus 0.79
Flura-seq identifies organ-specific adaptations in metastasis-initiating cells 0.75
RNA sequencing of Asthmatic Human Airway Smooth Muscle Cells II 0.75
Trans-differentiation of human adult peripheral blood T cells into neurons 0.75
RNA Expression Profile of Calcified Bicuspid, Tricuspid and Normal Human Aortic Valves by RNA Sequencing [TAV] 0.73
RNA-seq of SOX5 overexpressing primary human neuronal progenitors 0.73
Network-based, cross-cohort discovery of transcriptional mechanisms presiding over maintenance of high-risk neuroblastoma subtype state 0.69
single cell RNA-seq from Purkinje cell (ENCSR888LYA) 0.66
Transcriptional profiling of growing and senescent WT and IL-1R-depleted IMR90 cells 0.66
Methylation DNA mediated KLF4 binding activity in glioblastoma cells 0.64
Efficient derivation of microglia-like cells from human pluripotent stem cells 0.64
Genome-wide expression analysis of human hTert immortalized fibroblasts after downregulation of MCM2 & MCM7 0.6
Nickel exposure induces persistent mesenchymal phenotype in human lung epithelial cells through epigenetic activation of ZEB1 0.6
Immune Checkpoint Regulation of Pulmonary Fibrosis [bulk RNA-seq] 0.59
Identification of long noncoding RNAs in T-ALL cell lines 0.58
Enhancer activation during EGF response 0.58
Transcriptome Analysis and Functional Identification of Adipose-Derived Mesenchymal Stem Cells in Secondary Lymphedema 0.5
RNA-seq analysis of Retinoic Acid and Non-treated Control hiPSCs 0.49
YAP and MRTF-A, transcriptional co-activators of RhoA- mediated gene expression, are critical for glioblastoma tumorigenicity 0.47
Gene expression profile of calcified and normal tricuspid aortic valves by RNA sequencing. 0.47
Transcriptomic analysis of the effect of histone H4 K31R mutation in U2OS cells 0.43
Transcriptome-wide discovery of microRNA binding sites in human brain by Ago2 HITS-CLIP [Ago2-miRNA-target mRNA complexes] 0.41
Translating transcriptome of cancer cells in situ in mesenchymal-rich tumor microenvironment 0.41
Glucose inhibits cardiac maturation through nucleotide biosynthesis 0.4
Nickel induced transcriptional changes persist post exposure through epigenetic reprograming (RNA-seq dataset) 0.37
Single-cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos 0.36
KLF6-dependent transcription in renal cancer cells 0.34
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome 0.32
Transcriptome Analysis Reveals Distinct Responses to Physiologic versus Toxic Manganese Exposure in Human Neuroblastoma Cells 0.32
PolyA-sequencing in IMR-32 neuroblastoma cells with shRNA mediated depletion of CDK12, CDK13 or GFP. 0.3
Transcriptomics analysis of gene expression in normal and YTHDC1, SRSF1, SRSF3, SRSF7, SRSF9 or SRSF10 deficient human HeLa cells 0.29
Mutant p63 disrupts the key specification switch from the multipotent cell state to stratified epithelia during epithelial differentiation/in ectodermal dysplasia disorders 0.25
Adenovirus Small E1A Employs the Lysine Acetylases p300/CBP and Tumor Suppressor Rb to Repress Select Host Genes and Promote Productive Virus Infection [RNA-seq] 0.23
Adenovirus Small E1A Employs the Lysine Acetylases p300/CBP and Tumor Suppressor Rb to Repress Select Host Genes and Promote Productive Virus Infection 0.23
Gene expression in TAL1-driven T-cell ALL in response to TAL1-KD, UTX-KD, and GSKJ4 treatment 0.22
T-cell ALL in response to TAL1-KD, UTX-KD, and GSKJ4 treatment 0.22
mRNA differential expression analysis in a human ex vivo model of chronic wounds 0.22
The β-catenin/CBP-antagonist ICG-001 inhibits pediatric glioma tumorigenicity in a Wnt-independent manner 0.2
Transcriptomics profiling of Alzheimer’s disease reveal novel molecular targets 0.19
Vammin induces a highly efficient angiogenic response through VEGFR-2/NRP-1 and bypasses the regulatory function of VEGFR-1 0.19
Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability 0.18
Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [RNA-Seq] 0.18
Concomitant BCORL1 and BRAF mutations in vemurafenib-resistant melanoma cells 0.18
Transcriptome analysis of human embryonic stem cells (hESCs) upon siRNA-mediated knockdown of hESC-essential genes 0.16
Function and hormonal regulation of GATA3 in human first trimester placentation 0.13
IKZF1 as a Master Regulator of Immune Infiltrate Recruitment in Solid Tumors 0.13
RNA Expression Profile of Calcified Bicuspid, Tricuspid and Normal Human Aortic Valves by RNA Sequencing [BAV] 0.09
RNAseq of quiescent (Q) and stress induced premature senescent (SIPS) fibroblasts treated with plant extract (1201) from Solidago vigaurea subspecies alpestris 0.07
The impact of oil spill to lung health – insights from an RNA-seq study of human airway epithelial cells 0.07
RNA-seq in endometrial stromal tumors 0.06
ALS implicated protein TDP-43 sustains levels of STMN2 a mediator of motor neuron growth and repair 0.03
Comparison of 7 small cell lung cancer PDX models, cultured ex vivo, for response to LSD1 inhibitor RG6016/ORY1001 0.03
The bromodomain protein BRD4 regulates splicing during heat shock 0.02
Loss of endometrial plasticity in recurrent pregnancy loss (RNA-Seq) 0.01
Loss of endometrial plasticity in recurrent pregnancy loss 0.01
Role of NuRD subunits CHD3 and CHD4 in human melanoma cells (RNA-seq) 0.01
Role of NuRD subunits CHD3 and CHD4 in human melanoma cells 0.01
The circadian transcriptional landscape in primary human mammary epithelial cells 0.0
Next Generation Sequencing identifying the dosage compensation state in human endometrial carcinoma and adjacent tissues 0.0


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