Gene Query: SOX3

Dataset Description Geneva Score
Telomere-Dependent and Telomere-Independent Roles of RAP1 in Regulating Human Stem Cell Homeostasis 62.0
Induction of human SST and PV neurons by expressing a single transcription factor LHX6 60.38
DJ-1 is dispensable for human stem cell homeostasis 60.03
Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor 58.41
RNA sequencing for PDX1, NGN3 and MAFA transduced iPSCs cell 46.7
Transcriptome analyses of iPSC-derived neural stem/progenitor cells and cerebral organoids from monozygotic twins discordant for schizoaffective bipolar disorder 42.33
PTEN suppresses neoplastic transformation of human neural stem cells by transcriptional repression of Pax7 40.11
Transcriptome analysis of Zika infected neural stem cells 33.67
Zika infected neural stem cells 33.67
Genome-wide transcriptome profiles in Control and Schizophrenia hiPSC-dervied NPC [RNA-seq] 31.65
Next-generation sequencing of control and schizophrenia hiPSC derived NPC 31.65
Analysis of MGE Transcriptomes with or without Ctnnb1 knockout in human through RNA Sequencing 28.94
Verification and rectification of cell type-specific splicing of a Seckel syndrome-associated ATR mutation using iPS cell model 28.83
RNA-seq of hiPSCs-derived NPCs from 3 pairs of dizygotic discordant twins for Congenital Zika syndrome 27.68
Next Generation Sequencing Compares Effects of microRNA-9 perturbation in control and SZ hiPSC NPCs 27.05
RNA-Seq Analysis in hES/ iPS cell-derived neuronal samples 25.5
Patient iPSC-derived neural stem cells display progressive enlargement of lysosomes and disruptions of glycosaminoglycan pathway and autophagy in concordance with clinical severity of Mucopolysaccharidosis I 25.33
Modeling and characterization of the dynamic gene regulatory networks underlying cancer drug resistance based on time-course RNA-seq data 24.84
ZNF131 suppresses centrosome fragmentation in Glioblastoma stem-like cells through regulation of HAUS5 23.49
Differential expression of human parthenogenic stem cells, neural stem cells and DA progenitors. 20.1
RNA sequencing of ESC/iPSC-derived purified PAX6-GFP neural progenitors form control and Phelan-Mcdermid patients 19.82
Single Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human Cortex 19.18
Patient iPSC-Derived Neurons for Disease Modeling of Frontotemporal Dementia with Mutation in CHMP2B 18.81
SQSTM1/p62-directed metabolic reprogramming is essential for normal neurodifferentiation 18.33
RNA-sequencing of human peripheral blood mononuclear cells (PB MNCs) and induced neural progenitor cells derived from PB MNCs 18.33
mRNA sequencing of clinical-grade neural stem cells derived from human ES cells 18.07
Capturing the biology of mild versus severe disease in a pluripotent stem cell-based model of Familial Dysautonomia 17.75
Self-organization of polarized cerebellar plate neuroepithelium in three-dimensional culture of human pluripotent stem cells 16.53
Molecular Signatures Associated with ZIKV Exposure in Human Cortical Neural Progenitors 16.48
Modeling human brain evolution using induced pluripotent stem cells: comparative analysis of neuronal development in humans and chimpanzees 16.47
Transcriptome of iPSC-derived Neural Cells with Heterozygous Knockout in CHD8 15.75
Generation of induced neural stem cells from urine derived cells by synthetic mRNA 15.54
ZNF804A transcriptome networks in differentiating human neurons derived from induced pluripotent stem cells 14.98
Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders 13.92
Post-transcriptional remodelling is temporally deregulated during motor neurogenesis in human ALS models 13.29
JMJD3 and UTX Determine Fidelity and Lineage Specification of Human Neural Progenitor Cells 12.64
JMJD3 and UTX Determine Fidelity and Lineage Specification of Human Neural Progenitor Cells [RNA-seq] 12.64
Disruption of GRIN2B impairs differentiation in human neurons 12.56
scRNASeq analysis of cycling cardiomyocytes 12.39
Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development 12.2
RNA sequencing for human induced pluripotent stem cell cardiomyocyte differentiation 11.61
Coordination of neuron production in mouse and human cerebral cortex by the homolog of Drosophila Mastermind protein 11.51
RNAseq of cell lines with knocked in ESR1 mutations 11.23
Quantitative comparison between cellular mRNAs and exosomal mRNAs in human iPSC-derived motor neurons 11.11
Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells 10.63
Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells [ChIP-Seq & RNA-Seq] 10.63
Functional Haploid Human Oocytes Generated from Polar Body Genomes (RNA-Seq) 10.6
Functional Haploid Human Oocytes Generated from Polar Body Genomes 10.6
Reversing Abnormal Neural Development by Inhibiting OLIG2 in Down Syndrome Human iPSC Brain Organoids and Neuronal Mouse Chimeras 10.3
Total RNA sequencing of APC mutant and wt colonic organoids 9.5
Robust generation of honemogeneous midbrain organoids with in vivo–like cellular composition facilitates neurotoxin-based Parkinson’s disease modeling 8.96
RNA-sequencing WT vs SOCS3 knockout Glioblastoma stem-cells 8.3
Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration [RNA-seq2] 8.25
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells [Endoderm RNA-seq and ChIP-seq data sets] 8.07
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells 8.07
The effect of insulin on mRNA transcription of human pluripotent stem cells 7.87
The effect of engineered del(7q) on induced pluripotent stem cells (iPSCs) derived from patients with Shwachman Diamond Syndrome (SDS). 7.85
Three-dimensional Oxabicycloheptene sulfonate targets the homologous recombination and repair programs through estrogen receptor α antagonism 7.79
Subtle asymmetry of gene expression in embryonic and foetal human brains 7.21
AMPK signaling for naïve pluripotency [Hs] 6.9
AMPK signaling for naïve pluripotency 6.9
Integrated analyses of early responses to radiation in glioblastoma identify new alterations in RNA processing and candidate targets to improve treatment outcomes 6.89
Human Sandhoff Disease Cerebral Organoids Exhibit Enlarged Size, Increased Cellular Proliferation, and Impaired Differentiation 6.72
RNA sequencing of hiPSC derived neural crest populations from Familial Dysautonomia patients 6.61
Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain 6.52
RNA splicing alteration on glioblastoma and normal neural stem cells 6.47
Next Generation Sequencing Facilitates Comparisons of Control and Schizophrenia-Patient derived hiPSC-derived NPCs 6.38
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and AXL-/- astrocytes Transcriptomes 5.96
Growth factor-free, chemically-defined culture system for expansion and derivation of human pluripotent stem cells 5.93
Human embryonic stem cells in E8 and AKIT culture medium 5.93
Effect of REST on cancer invasiveness in MCF-7 and MDA-MB-231 cells using RNA-sequencing (RNA-seq) analysis . 5.56
Transcriptomic Profiling of Developing Human Paraxial Mesoderm from 4.5-5 Weeks of Gestation Human Embryos 5.48
NR2F2 study 5.2
Estrogen response in breast cancer cell line MCF-7 is dependent on NR2F2 [RNA-seq] 5.2
RNA-seq of H9-hESC derived human neural stem cells with combinations of mutant IDH1-R132H overexpression, P53 shRNA knockdown and/or ATRX shRNA knockdown 5.13
H9-hESC derived human neural stem cells with combinations of mutant IDH1-R132H overexpression, P53 shRNA knockdown and/or ATRX shRNA knockdown 5.13
Induced pluripotent stem cell modeling of bone marrow failure and MDS identifies therapeutic targets 5.1
Discovery of Drug Candidates that Inhibit and Eliminate Zika Virus Infection in Fetal and Adult Brain 5.02
Generation of Brain Region-specific Organoids using a Miniaturized Spinning Bioreactor and Modelling ZIKV Exposure 4.79
Human pluripotent stem cell-derived brain tumor model uncovered embryonic stem cell signature as a key driver in atypical teratoid/rhabdoid tumor (RNA-Seq) 4.75
Total RNA sequencing of prospective axial stem cell cultures derived from human pluripotant stem cells 4.61
Bach1 Regulates the Self-renewal and Mesendodermal Differentiation of Human Embryonic Stem Cells 4.52
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 [RNA-seq] 4.4
Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21 4.4
Heterozygous mutations in SMARCA2 lead to impaired neurogenesis due to global retargeting of SMARCA4 4.4
Studying iPSCs from a hibernating mammal reveals molecular mechanisms of cold resistance in neural tissues 4.16
Role for the Transcriptional Activator ZRF1 in Breast Cancer Progression and Endocrine Resistance 4.1
High-efficiency RNA-based reprogramming of human primary fibroblasts 4.08
FUS mutant human motoneurons transcriptome analysis reveals altered pathways and impairment of microRNA function 4.01
Single-cell transcription profiling in KS1 patient iPSCs and NPCs 3.74
Total RNA sequencing of WT intestinal orgaonids. 3.62
Differentially expressed vascular development genes for iPSC-ECs from CDI 3.62
Transcriptomic analysis of the effect of trastuzumab in human iPSC-CMs 3.53
Engineered human pluripotent stem cell-derived intestinal tissues with a functional enteric nervous system 3.44
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation [RNA-Seq SS] 3.33
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment 3.27
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment [RNA-Seq] 3.27
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-Seq] 3.24
Recapitulation of Human Neural Microenvironment Signatures in iPSC-Derived NPC 3D Differentiation 3.18
RNA-seq in neurons derived from iPSCs in controls and patients with schizophrenia and 22q11 del 3.09
Human embryonic stem cell, chimpanzee induced pluripotent stem cell, orangutan induced pluripotent stem cell, rhesus embryonic stem cell, and their derived cortical organoid RNA-seq 3.05
Transcriptional profiling of MCF7 cells treated with H3B05942, E2, or standard of care compounds 3.0
Transcriptome analysis reveals determinant stages controlling human embryonic stem cell commitment to neuronal cells 2.97
PNET animal model: new insights (II) 2.95
Reprogramming by de-bookmarking somatic transcriptional program via targeting the BET bromodomains 2.9
Transcriptomic analysis of human neural progenitor cells differentiation into astrocytes 2.9
Transcriptome analysis of diverse cell types infected with human cytomegalovirus [RNA-Seq] 2.89
GLIS3 Transcriptionally Activates WNT Genes to Promote Differentiation of Human Embryonic Stem Cells to Posterior Neural Progenitors 2.84
Propargite, an environmental chemical, interacts with GWAS identified diabetes genes to impact human pancreatic β-cell death 2.76
Codon usage optimization in pluripotent embryonic stem cells [RNA-seq] 2.71
SOX21 ensures rostral forebrain identity by suppression of WNT8B during neural regionalization of human embryonic stem cells 2.69
Expression profiles of the four human major ectodermal lineages 2.67
SEUSS: A scalable screening platform to assess transcriptomic and fitness effects of transcription factor overexpression 2.6
C9orf72 Intermediate Repeats are Associated with Corticobasal Degeneration, Increased C9orf72 Expression and Disruption of Autophagy 2.59
Global Transcriptional analysis of human spinal cord and neocortical neuroepithelial stem (NES) cells 2.35
RNA sequencing analysis of human embryonic stem cells and axial progenitors 2.33
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells 2.31
UTX and 53BP1 co-regulate genetic programs for neural differentiation of human embryonic stem cells [RNA-seq] 2.31
Elucidating the microRNA-203 specific biological processes in glioblastoma cells from comprehensive high-throughput RNA-sequencing transcriptome profiling 2.3
Luminal lncRNAs Regulation by ERα-controlled Enhancers in a Ligand-independent Manner in Breast Cancer Cells 2.29
Species-specific maturation profiles of human, chimpanzee and bonobo neural cells 2.28
RNA-seq of naive and primed ES cells (NHSM) 2.23
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies 2.23
Gene expressions of H9s in different culture systems 2.22
RNA-Seq profiling of days 0, 7 and 18 kidney organoids differentiated from three separate vials of starting material 2.21
LncPRESS1 is a p53-regulated lncRNA that safeguards pluripotency by disrupting SIRT6 mediated de-acetylation of histone H3K56 2.21
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (RNA-Seq) 2.15
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics 2.15
Human iPSC-derived cells and microengineered Organ-Chip enhance neural development. 2.13
Epigenome regulation during epidermal lineage commitment [ATAC-seq, RNA-seq] 2.09
Deep sequencing of transcript levels in pluripotent stem cells and their differentiated derivatives in all three germ layers 1.99
RNA-seq data for non-targeting siRNA and CDK11 siRNA transfection in SHhES8 cells 1.94
Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq 1.94
Comparison of 7 small cell lung cancer PDX models, cultured ex vivo, for response to LSD1 inhibitor RG6016/ORY1001 1.94
Analysis of the Clustered Protocadherin (cPcdh) Locus in Human Pluripotent Stem and Derived Cells [RNA-seq II our of II] 1.9
Conservative alteration of chromosomal expression pattern across human solid tumor types 1.88
Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells 1.85
TRPS1 shapes YAP/TEAD-dependent transcription in breast cancer cells [RNA-seq] 1.72
TRPS1 shapes YAP/TEAD-dependent transcription in breast cancer cells 1.72
RNA-seq of YB5 and MCF7 treated with different doses of decitabine 1.7
Modeling the ESR1 tyrosine 537 mutation with CRISPR-Cas9 for mechanistic studies and evaluation of therapeutic approaches for metastatic breast cancer 1.67
Modeling the ESR1 tyrosine 537 mutation with CRISPR-Cas9 for mechanistic studies and evaluation of therapeutic approaches for metastatic breast cancer [RNA-Seq] 1.67
RNA-Seq characterization of human H1-derived NPC differentiation timecourse 1.65
Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination 1.62
Transcriptome of iPSC-derived Cerebral Organoids with Heterozygous Knockout in CHD8 1.61
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 [HOM] 1.59
RNA-Seq analysis of neurons derived from induced pluripotent stem cells reprogrammed from dental pulp 1.59
High-throughput sequencing of pluripotent cells 1.52
SHANK2 mutations associated with autism spectrum disorder cause hyperconnectivity of human neurons 1.46
hESC neural differentiation 1.44
RNA-seq analysis of gene expression patterns during hESC neural differentiation 1.44
Uridilation by TUT4/7 restricts retrotransposition of human Line-1s 1.41
Activin/Smad2-induced H3K27me3 reduction is crucial to initiate mesendoderm differentiation of ES Cells 1.39
BI Human Reference Epigenome Mapping Project 1.39
Transcriptomic analysis of iPSC and ESC challenged with atmospheric or physiological oxygen 1.37
Generation, transcriptome profiling, and functional validation of cone-enriched human retinal organoids 1.36
The effect of REST and its alternatively spliced transcript, REST-003, on breast cancer invasiveness 1.35
Cranial pericytes derived from neural crest cells reveal an inherent cell type-specific defect in Alzheimer's Disease 1.34
RNA-Seq of cKIT+ sorted cells from 16-16.5 week old fetal testes and ovaries and RNA-Seq of TRA-1-60+ H1 hESCs 1.34
CHCHD2 gene KO effect in iPSC drived motor neurons 1.32
Targeted reactivation of FMR1 transcription in FXS embryonic stem cells 1.29
Transcriptome analysis of human embryonic stem cells (hESCs) upon siRNA-mediated knockdown of hESC-essential genes 1.27
The Unfolded Protein Response Regulator, ATF6, Promotes Mesodermal Differentiation 1.26
ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2 1.23
ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2 [RNA-Seq] 1.23
POLR3G Dependent PolyA+ and smallRNA Transcriptomes in Human Pluripotent Stem Cells 1.21
Role of SUMOylation in differential ERα transcriptional repression by SERMs and pure antiestrogens in breast cancer cells 1.17
Comparative analysis of WT and ZEB1 KO cells in different stages during differentiation 1.14
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq2] 1.13
RNA-Seq from early time points in the kidney differentiation protocol 1.12
Detailed genomic and molecular characterization of Indian induced pluripotent stem cell lines 1.12
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of H1 and H1 after SNAI1 deletion at Day2 after human early hematopoietic differentiation . 1.09
Transcriptome analysis of human embryonic stem cells (hESCs) and human fibroblasts upon rapamycin 1.07
Next Generation Sequencing of human SMA and healthy control Motor Neurons 1.05
DIGIT regulates endoderm differentiation of human embryonic stem cells 1.04
Messenger RNA expression after silencing or inhibition of MEN1in MCF-7 breast cancer cells 1.04
Self-organized cerebral organoids with human specific features predict effective drugs to combat Zika virus infection [RNA-seq] 1.02
Self-organized cerebral organoids with human specific features predict effective drugs to combat Zika virus infection 1.02
Role of FGFR1 in neuronal devlopment 1.02
Single-Cell RNA Sequencing Reveals Metallothionein Heterogeneity during hESC Differentiation to Definitive Endoderm [RNA-Seq] 1.0
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency 0.98
Differentially expressed (DE) genes analysis in synovial fluid mesenchymal stem cells (SF-MSCs), SF-MSC derived iPSCs and iPSC derived MSCs (iPSC-MSCs) 0.96
Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration 0.95
MARS Seq data from human cortical organoids 0.94
RNA-seq of naive and primed ES cells 0.93
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation [RNA-Seq rescue_SS] 0.92
The MEF2B Regulatory Network - RNA-seq data 0.88
The MEF2B Regulatory Network 0.88
Epigenome regulation during epidermal lineage commitment 0.88
In vivo generation of post-infarct human cardiac muscle by laminin-promoted cardiovascular progenitors [LN-521 or LN-521+LN-221] 0.88
iPSC derived motor neuron cultures from C9ORF72 carriers 0.88
Transcriptome analysis of small molecule-mediated astrocyte-to-neuron reprogramming 0.85
Transcriptomic responses to Ivacaftor and prediction of Ivacaftor clinical responsiveness 0.85
Expression profiling of MCF-7 cells with treatment of TCDD 0.83
Expression profiling of MCF-7 cells with 10nM treatment of TCDD 0.83
Transcriptome analysis of genetically matched human induced pluripotent stem cells disomic or trisomic for chromosome 21 0.81
m6A level and isoform characterization sequencing (m6A-LAIC-seq) reveal the census and complexity of the m6A epitranscriptome 0.81
RNA-Seq Analysis of Anacardic Acid Treated MCF7 and MDA-MB-231 Breast Cancer Cell Lines 0.8
Re-programing chromatin with a bifunctional LSD1/HDAC inhibitor induces therapeutic differentiation in DIPG 0.79
Re-programing chromatin with a bifunctional LSD1/HDAC inhibitor induces therapeutic differentiation in DIPG [RNA-seq] 0.79
Transcriptome of U251 cells overexpression complement component 7 0.78
Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq 0.78
Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 0.78
RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells. 0.76
Transcription-dependent control of stem cell self-renewal and differentiation by the splicing factor U2AF1 0.74
Epigenomic landscape during organ formation in human early embryos 0.74
Enriched retinal ganglion cells derived from human embryonic stem cells (RNA-seq) 0.73
Targets of ROR2 overexpression in MCF-7 cells revealed a differentially regulated module of non-canonical WNT signaling pathway 0.71
Primate-specific gene TMEM14B promotes cortical expansion and folding 0.71
Self-organized amniogenesis by human pluripotent stem cells in a biomimetic implantation-like niche 0.7
Identification of altered developmental pathways in human juvenile HD iPSC with 71Q and 109Q using transcriptome profiling 0.68
Identifying markers predicting successful graft outcome for clinical translation of hESC-based cell therapy for Parkinson’s disease 0.67
Targeted differentiation of regional ventral neuroprogenitors and related neuronal subtypes from human pluripotent stem cells 0.67
Genome-wide maps of m6A circRNAs identify widespread and cell-type-specific methylation patterns that are distinct from mRNAs 0.66
RNA-seq and small RNA-seq from WT and ADAR1 knockdown H9 lines and their differentiation to specific types of neurons 0.66
Rescue of Fragile X syndrome by DNA methylation editing of the FMR1 0.66
Rescue of Fragile X syndrome neurons by DNA methylation editing of the FMR1 gene [RNA-seq] 0.66
In vitro differentiation of human embryonic stem cells into ovarian follicle-like cells 0.65
RNA-Seq of LRRK2 G2019S Parkinson’s iPSC-derived astrocytes 0.65
Mechanism suppressing H3K9 trimethylation in pluripotent stem cells and its demise by polyQ-expanded huntingtin mutations [RNA-seq] 0.63
Mechanism suppressing H3K9 trimethylation in pluripotent stem cells and its demise by polyQ-expanded huntingtin mutations 0.63
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors 0.61
FMR1 reactivating treatments in Fragile X iPSC-derived neural progenitors in-vitro and in-vivo 0.61
Characterization and therapeautic application of mesenchymal stem cells with neuromesodermal origin from human pluripotent stem cells 0.6
Transcriptomes of iPSC-derived and post-mortum Hypothalamus Neurons from obese and control donors 0.6
SREBP1 drives Keratin 80-dependent cytoskeletal changes and invasive behavior in endocrine resistant ERα breast cancer 0.6
Characterization and transplantation of enteric neural crest cells from human induced pluripotent stem cells 0.59
Transcriptome analysis of PRMT6 knock-out in NT2/D1 cells 0.57
Genomic location of PRMT6-dependent H3R2 methylation is decisive for the transcriptional outcome of associated genes 0.57
Safeguarding nucleolar homeostasis by CBX4 alleviates senescence and osteoarthritis 0.57
RNA-sequencing based transcriptome-wide expression profiling of Cynomolgus monkey and human IPSCs in vitro differentiated into endothelial cells 0.56
High-depth RNA sequencing of isogenic wild-type, PIK3CA-WT/H1047R and PIK3CA-H1047R/H1047R human iPSCs 0.56
Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with Eralpha 0.56
A non-canonical role of YAP/TEAD is required for activation of estrogen-regulated enhancers in breast cancer [RNA-seq] 0.56
A non-canonical role of YAP/TEAD is required for activation of estrogen-regulated enhancers in breast cancer 0.56
Combinatorial Reprogramming of Estrogen Signaling by the Nuclear Receptor Family 3C 0.55
Analysis of regulatory element evolution between human and mouse reveals a lack of cis-trans compensation 0.55
Transcriptome profiling of H1-iCas9 cells grown on laminin and on MEFs 0.54
Generation of targeted homozygosity in the genome of human induced pluripotent stem cells 0.52
Global gene expression profiles of cardiomyocytes differentiated from human pluripotent stem cells (hiPSC-CMs) in 3D culture exposed to ethanol 0.52
Gene expression analysis in U251 and U87 cells transduced with NANEP5 vector. 0.51
Modeling Trilateral Retinoblastoma using Human Embryonic Stem Cells 0.48
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (RNA-Seq) 0.47
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation 0.47
Transcript abundance in A-T-derived iPSC: Comparing isogenic cells to unrelated individual 0.47
‘Naïve’ ESRRB+ iPSCs with the capacity for rapid neural differentiation 0.46
snRNAs as regulators of alternative splicing 0.46
hiPSCs unravel aberrant TGFβ signaling as an etiology of left ventricular non-compaction 0.46
Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells 0.46
Transcriptome analysis of H9 hESC derived cerebral organoids 0.45
Non-transmissible measles virus vector with segmented RNA genome establishes different types of iPSCs from hematopoietic cells 0.45
The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment  0.44
Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [RNA-Seq Human] 0.44
Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases 0.43
Transcriptomic and Epigenomic analysis of Huntington's disease and control patient iPSC-derived neural cells 0.43
mRNAseq of Huntington's disease and control patient iPSC-derived neural cells 0.43
Distinct Pathological Signatures in Human Cellular Models of Myotonic Dystrophy Subtypes 0.43
Landscape of Hematopoiesis Described in Induced Pluripotent Stem Cells and Human Bone Marrow 0.43
ICE1 promotes the link between splicing and nonsense-mediated mRNA decay 0.43
Transcriptional alteration after ionizing radiation exposure in human fibroblasts, iPSCs and NPCs 0.43
RNA-seq differential expression studies: more sequence, or more replication? 0.43
Transcriptome-wide profiling of poly(A)-tail length, translation efficiency and mRNA stability using TED-seq, mRNA-seq, Ribo-seq and PRO-seq in ER stress conditions 0.42
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors 0.41
Coding mutations and loss-of-imprinting in human pluripotent cells derived by nuclear transfer and defined factors [RNA-Seq] 0.41
R430: A potent inbibitor of DNA and RNA viruses 0.4
hNSCs siRNA NOVA2 0.4
RNA-seq analysis of RALD iPSCs after in vitro differentiation 0.39
Identification of transcripts altered upon LIN-41 knockdown in human embryonic stem cells 0.38
The acetyllysine reader BRD3R promotes human nuclear reprogramming and regulates mitosis 0.37
Maturation of human iNSCs 0.37
Functional Cardiac Fibroblasts Derived from Human Pluripotent Stem Cells via Second Heart Field Progenitors 0.37
The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition 0.37
Transcriptomic analysis of human iPS cells derived from fragile X syndrome patients during neural differentiation 0.36
Next Generation Sequencing Analysis of human embryonic stem cells derived MESP1-mTomato reporter cells 0.36
Comparative whole-transcriptomic analysis between normal and AKAP-Lbc-depleted human embryonic stem cells 0.35
ZFR coordinates crosstalk between RNA decay and transcription in innate immunity 0.35
Hematopoietic Stem and Progenitor Cells from Human Pluripotent Stem Cells via Transcription Factor Conversion of Hemogenic Endothelium 0.35
Next Generation Sequencing Facilitates Quantitative Analysis of mesoderm posterior bHLH transcription factor 1(MESP1)+ and MESP1- cells' Transcriptomes 0.34
Derivation of kidney organoids from human pluripotent stem cells [RNA-Seq: Data Set 2] 0.34
Discovery of a Drug Candidate for GLIS3-Associated Diabetes 0.34
Single-Cell Transcriptome Analysis of Lineage Diversity and Microenvironment in High-Grade Glioma 0.34
The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks 0.34
Essential Roles of SETD7 as Transcriptional Activator and Co-regulator of H3K36me in Cardiac Lineage Commitment 0.33
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of human mesenchymal stem cells differentiation from human embryonic stem cells and adult bone marrow mesenchymal stem cells 0.33
SOX10 Single Transcription Factor Based Fast and Efficient Generation of Oligodendrocytes from Human Pluripotent Stem Cells 0.32
A myogenic double reporter human pluripotent stem cell line allows prospective isolation of skeletal muscle progenitors 0.32
KMT2C medaites the estrogen dependence of breast cancer through regulation of ERα enhancer function 0.32
Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing 0.31
ChIP-seq of ER and RUNX2 in MCF7 breast cancer cell lines 0.31
Genome wide expression change in LCC2 and MCF-7 cells 0.31
Transcriptome analysis of diverse cell types infected with human cytomegalovirus 0.3
Progressive motor neuron pathology and the role of astrocytes in a human stem cell model of VCP-related ALS 0.3
Effects of Spaceflight on Human Induced Pluripotent Stem Cell-Derived Cardiomyocyte Structure and Function 0.3
Poly(A)-specific ribonuclease (PARN) mediates 3' end maturation of the telomerase RNA component 0.29
A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging 0.29
Gene expression analysis of ER+ and ER- breast cancer cell lines with acquired resistance to palbociclib 0.29
Polycomb complexes associate with enhancers to promote oncogenic transcriptional programs in cancer 0.29
TRIM28 interacts with EZH2 and SWI/SNF to activate genes that promote mammosphere formation 0.27
The RNA exosome nuclease complex regulates human embryonic stem cell differentiation 0.27
RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of H1, H1 derived APLNR+ cells, CD31+CD34+ cells and CD43+ cells during human early hematopoietic differentiation 0.27
Energy Metabolism during Anchorage-Independence 0.27
Ribosomal protein RPL26 is the principal target of UFMylation 0.27
RNA-seq of UGP2 mutant human embryonic stem cells and in vitro differentiated neural stem cells 0.27
ARID1A is a critical regulator of luminal identity and therapeutic response in oestrogen receptor-positive breast cancer (RNA-Seq) 0.27
Temporal activation of NR5A2 and RARγ induce functional human naïve pluripotent state via modulating TGFβ pathway 0.26
PRC2 specifies ectoderm lineages and maintains pluripotency in primed but not naïve ESCs 0.26
Epigenomic conservation of transposable element silencing [RNA-seq] 0.26
Epigenomic conservation of transposable element silencing 0.26
Effects of NSUN2 deficiency on the mRNA 5-methylcytosine modification and gene expression profile in HEK293 cells (RNA-Seq) 0.26
Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury [human iPS] 0.26
Comprehensive analysis of Long non-coding RNA expression in dorsal root ganglion reveals cell type specificity and dysregulation following nerve injury 0.26
A peninsular structure coordinates asynchronous differentiation with morphogenesis to generate pancreatic islets [bulk vs buds] 0.26
Genome-wide transcriptome analysis of NIPBL iPSC and commited cardiomyoctes 0.25
Molecular analysis of high-grade serous ovarian carcinoma with and without associated serous tubal intra-epithelial carcinoma [RNA-Seq; normal samples] 0.25
Error-free and error-prone DNA repair gene expression through reprogramming and passage in human iPS cells 0.24
Ectoderm specification of H1 human embryonic stem cells 0.24
FGF2 regulation of gene expression in stable inducible Neurons 0.23
Effect of Polybrominated diphenyl ethers (PBDEs) on gene expression of MCF7 cells 0.23
Profiling gene expression changes in primary ovarian tumors compared to matched normal fallopian tubes 0.23
Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone [IMR90_MCF7_RNA-Seq] 0.22
Epigenetic mechanisms underlie the crosstalk between growth factors and a steroid hormone 0.22
Chronophin regulates metabolic and transcriptomic features of glioblastoma stem-like cells 0.22
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival [RNA-Seq] 0.21
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival 0.21
Molecular Criteria for Defining the Naive Human Pluripotent State 0.21
Modulation of Indoleamine 2, 3-dioxygenase 1 Expression by Activated Human T cells in Breast Cancer Cells is Controlled by DNA Promoter Methylation 0.2
Dissecting neural differentiation regulatory networks through epigenetic footprinting 0.2
Single-cell RNA-Seq Investigation of Foveal and Peripheral Expression in the Human Retina 0.2
Comparative principles of DNA methylation reprogramming during human and mouse in vitro primordial germ cell specification 0.2
Comparative principles of DNA methylation reprogramming during human and mouse in vitro primordial germ cell specification [Mouse and Human RNA-seq and BS-seq] 0.2
Laminin-guided highly efficient endothelial commitment from human pluripotent stem cells [Bulk RNA-Seq] 0.2
Isogenic patient-derived human iPSCs, wild-type or heterozygous for PIK3CA-E418K 0.2
Suppression of NAF-1 in Breast Cancer Cells Reduces their Tumorigenicity by Interfering with Cellular Iron Distribution and Metabolism and Ensuing ROS Formation and Apoptosis 0.2
FOXP1 orchestration of ASD-relevant signaling pathways. 0.19
Distinct Roles of BET Family Members in ERα Enhancer Function and Gene Regulation in Breast Cancer Cells 0.19
Distinct Roles of BET Family Members in ERα Enhancer Function and Gene Regulation in Breast Cancer Cells [RNA-seq] 0.19
Receptor tyrosine kinase signaling promotes post-embryonic morphogenesis and survival of glia and neural progenitor cells 0.19
Differential Gene Expression between MCF10A and MCF7 cells 0.19
Identification of downstream genes regulated by YAP1 through knockdown and overexpression of YAP1 in U251 cell with a stably expression of mutant APP 0.19
Region-specific Innate Antiviral Responses of the Human Epididymis 0.18
Human stem cell based models of neuronal migration provide insight into neurological disease pathogenesis and potential treatment 0.18
Histone H3 Lysine4 Acetylation-Methylation Dynamics Define Breast Cancer Subtypes 0.17
Histone H3 lysine 4 acetylation-methylation dynamics define breast cancer subtypes [RNA-seq] 0.17
Human germ cell formation in xenotransplants of induced pluripotent stem cells carrying X chromosome aneuploidies 0.17
Cerebellar differentiation in Ataxia-Telangiectasia 0.17
H3K27Ac in MCF7 Y537S ER mutant cells and RNAseq with and without treatment with THZ1 0.17
A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling] 0.16
Discovery of naturally occurring ESR1 mutations during acquisition of resistance to endocrine therapy in widely used estrogen receptor positive breast cancer cell lines 0.16
Discovery of naturally occurring ESR1 mutations during acquisition of resistance to endocrine therapy in widely used estrogen receptor positive breast cancer cell lines [RNA-Seq] 0.16
Next Generation Sequencing Facilitates Quantitative Analysis of miR-29b-1 and miR-29a targets in tamoxifen-sensitive and tamoxifen-resistant human breast cancer cells 0.16
Genome-scale screens identify JNK/JUN signaling as a barrier for pluripotency exit and endoderm differentiation 0.16
Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics 0.16
Human naïve pluripotent stem cells exhibit X chromosome dampening and X-inactivation (RNA-Seq) 0.16
Single cell analysis of HSV-1 infection reveals anti-viral and developmental programs are activated in distinct sub-populations with opposite outcomes 0.15
Global reduction in H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas 0.15
mRNA sequencing of the global effect of SOX2 on gene expression in hESC and hESC derived NPCs. 0.15
Restoration of Progranulin Expression Rescues Cortical Neuron Generation in Induced Pluripotent Stem Cell Model of Frontotemporal Dementia 0.15
Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor 0.15
Analysis of transcrptomes of Danon patient derived hiPSC-cardiomyocytes by RNA-deep Sequencing 0.14
Heterozygous and homozygous knock-in of PIK3CA-H1047R into human iPSCs 0.14
MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance 0.14
MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance (RNA-Seq) 0.14
Serotonin-induced hyperactivity in SSRI-resistant major depressive disorder patient-derived neurons 0.14
G9a-Mediated Methylation of ERα Links the PHF20/MOF Histone Acetyltransferase Complex to Hormonal Gene Expression 0.14
CUREfast: Accelerating research with families 0.14
Alternative classification of glioblastoma based on BUB1B-inhibition sensitivity 0.14
Intrinsic histone acetyltransferase activity of BRD4 is responsible for nucleosome eviction and transcriptional activation 0.14
Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR+ Populations with Stem Cell Properties 0.14
Engineering Patient-Specific Tissue Implants 0.13
The transition from proliferation to quiescence in glioblastoma stem-like cells requires Ca2+ signaling and mitochondria remodeling 0.13
REST and Neural Gene Network Dysregulation in iPS Cell Models of Alzheimer’s Disease 0.13
REST and Neural Gene Network Dysregulation in iPS Cell Models of Alzheimer’s Disease (RNA-seq data set) 0.13
Identification of mRNAs with reduced ribosomal loading upon knock-down of translation factor DAP5 from hESCs. 0.13
Identification of diverse target RNAs that are functionally regulated by human Pumilio proteins 0.13
NAD+ Analog-sensitive PARPs Reveal a Role for PARP-1 in Transcription Elongation 0.13
Dissecting the dynamics of signaling events in the BMP,WNT and NODAL cascade during self-organized fate patterning in human gastruloids 0.13
Functional Importance of eRNAs for Estrogen-dependent Gene Transcriptional Activation 0.13
Generating Patterned Kidney Organoids for Studying Development and Diseases [bulk RNA-Seq] 0.13
NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements 0.13
LED, a long non-coding RNA activator of enhancer RNAs, is hypermethylated in human cancers 0.12
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [RNA-Seq] 0.12
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes 0.12
Improved LCL to iPSC reprogramming: RNA Analysis of LCLs, reprogrammed iPSCs, and differentiated NSCs reveal potential regulatory and functional processes involved in these cellular transitions. 0.12
Zika virus directly infects human peripheral neurons and induces cell death 0.12
Transcriptomic analysis to underly the heterogeneity between 4 cellular models derived from patients diagnosed with pediatric high-grade gliomas under controlled atmosphere (modulation of oxygen level). 0.12
Temporal dynamic reorganization of 3D chromatin in hormone-induced breast cancer and endocrine resistance 0.12
Examining serotonergic neuron differentiation from human iPSCs 0.12
Transcriptomic Dynamics during Differentiation Process of Human Pluripotent Cells into Hepatocyte-like Cells 0.12
Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates (part 4) 0.12
Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates 0.12
ENCODE Cold Spring Harbor Labs Long RNA-seq 0.12
Effects on gene expression of ibrutinib treatment in human stem cells-derived atrial- and ventricular-like cardiomyocytes 0.12
Rapid neurogenesis through transcriptional activation in human stem cell (RNA-Seq) 0.11
Global transcriptome analysis of WT versus HEB-/- hESCs 0.11
H3.3K27M cooperates with p53 loss and Pdgfra gain in mouse embryonic neural progenitor cells to induce invasive high-grade gliomas 0.11
H3.3K27M cooperates with p53 loss and Pdgfra gain in mouse embryonic neural progenitor cells to induce invasive high-grade gliomas [Human RNA-Seq] 0.11
Networks of cultured iPSC-derived neurons reveal the human synaptic activity-regulated adaptive gene program 0.11
DDX54 regulates transcriptome dynamics during DNA damage response [RNA-seq2] 0.11
Genetic Tagging During Human Mesoderm Differentiation Reveals Tripotent Lateral Plate Mesodermal Progenitors 0.11
RNA-seq reveals changes in the astrocyte transcriptome following Borrelia burgdorferi infection 0.11
microRNA-seq and RNA-seq reveals changes in the astrocyte transcriptome following Borrelia burgdorferi infection 0.11
LncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression 0.11
Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis 0.11
Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis [RNA-Seq] 0.11
The transcriptome and chromatin accessbility landscape of mammalian germline 0.11
Postnatal lipids drive hepatocyte maturation 0.1
Gene expression of thyroid cancer cell lines 0.1
RNA-seq analysis reveals endogenous aryl hydrocarbon receptor regulation is highly associated with eicosanoid synthesis and tumor necrosis factor activity in MCF-7 cancer cells 0.1
Reduced CYFIP1 in human neural progenitors as 15q11.2 deletion model: donor specific dysregulation of schizophrenia/epilepsy genes 0.1
RNA-sequencing of Wnt-dependent and Wnt-independent of Glioblastoma stem cell cultures 0.1
Transcriptional regulation in pluripotent stem cells by Methyl CpG binding protein 2 (MeCP2) 0.09
Gene expression profiles in HMC3 cells after exposure to ketamine or its active metabolites: 2R6R-HNK and 2S6S-HNK 0.09
A radiolabeling-free, qPCR-based method for locus-specific pseudouridine detection 0.09
Antiviral innate immunity of hepatitis C virus-infected stem cell-derived hepatocytes 0.09
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [RNA-Seq_Stability] 0.09
RNA-Seq profiling of iPSC-derived ventricular and atrial cardiomyocytes 0.09
Integrated Multi-omic Analysis of Esthesioneuroblastomas Identifies Two Subgroups Linked to Cell Ontogeny 0.09
The control of rRNA synthesis during the directed differentiation of human embryonic stem cells precedes heterochromatin formation. 0.09
mRNA expression data from human parthenogenetic haploid ESCs (hPGES), normal ESCs (H9) and human fibroblast 0.09
Genomic analysis of human parthenogenetic haploid ESCs (hPGES), normal human ESCs(H9) and human forskin fibroblast 0.09
Human Induced Pluripotent Stem Cells Recapitulate Breast Cancer Patients’ Predilection to Doxorubicin-Induced Cardiotoxicity 0.08
LINE-2 transposable elements are a source of functional human microRNAs and target sites 0.08
Gene expression profiles of rescue with wild type or SUMO double mutant TRIM24 0.07
Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability [ RNA-seq] 0.07
Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability 0.07
Gene-Edited Human Kidney Organoids Reveal Mechanisms of Disease in Podocyte Development 0.07
PTBP1 excludes UPF1 to protect long 3'UTRs from nonsense-mediated mRNA decay 0.07
DDX54 regulates transcriptome dynamics during DNA damage response [4SU-seq] 0.07
The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [RNA-seq] 0.07
RNA-sequencing with micro-dissected boundary organoid into anterior, posterior, and boundary regions 0.07
Transcriptome variation among human embryonic stem cell lines impacts on their differentiation 0.07
Single-Cell reconstruction of differentiation trajectory reveals essential dynamics in human cardiac lineage commitment 0.07
Transcriptional landscape changes during human embryonic stem cell derivation 0.07
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin 0.07
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity 0.07
Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes 0.07
In vitro modeling of human germ cell development using pluripotent stem cells 0.06
Neurofibromin is an Estrogen Receptor alpha Transcriptional Co-repressor in Breast cancer 0.06
Time series total RNA sequencing of a differentiation of human embryonic stem cells towards trophoblast lineage 0.06
The SS18-SSX fusion oncoprotein hijacks BAF complex targeting and function to drive synovial sarcoma [RNA-Seq Tumor] 0.06
Generating Patterned Kidney Organoids for Studying Development and Diseases 0.06
Gene expression profiles of ibrutinib-responsive and ibrutinib non-responsive cells in ERBB4 expressing cancer cell lines 0.06
Reconstitution of the human pancreatic niche stimulates differentiation of hESCs into beta cells and reveals new signals for pancreatic endocrine cell maturation 0.06
Evolution of an lncRNA leads to a primate specific modulation of alternative splicing 0.06
Functional astrocytes differentiated from hiPSCs 0.06
PTHrP overexpression in MCF7 cells 0.05
Effects of plasticizers (bisphenol A, bisphenol AF) and an herbicide in MCF7 human breast cancer cells 0.05
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process 0.05
Cockayne syndrome A and B proteins regulate the transcription arrest upon genotoxic stress through a ubiquitin/proteasome degradation process (RNA-seq) 0.05
Hyper-excitability of Neurons generated from Patients with Bipolar Disorder 0.05
Culture-induced recurrent epigenetic aberrations in human pluripotent stem cells 0.05
Culture-induced recurrent epigenetic aberrations in human pluripotent stem cells [RNA-seq] 0.05
Derivation and differentiation of haploid human embryonic stem cells [RNA-Seq 1] 0.05
Brain organoids reproducibly generate the cellular diversity of the human cerebral cortex 0.04
C9/ALS Human Embryonic Stem Cells and C9/ALS Induced Pluripotent Stem Cells 0.04
Cell cycle positioning drives heterogeneity within the pluripotent stem cell compartment 0.04
mRNA expression data from ESCs derived by polar body transfer reconstructed embryos (PBTESCs) 0.04
Fusion discovery in breast cancer cell line 0.04
RNA-seq analysis and shRNA screen of breast cancer 0.04
RNA-seq analysis of breast cancer 0.04
Profiling in vivo Bone Lesion (IVBL) and Orthotopic tumors by Next Generation Sequencing 0.04
Three congruent human Schwann cell models of CMT1A reveal a converged phenotype 0.04
Activity-dependent transcriptional changes in human neurons 0.04
Pharmacological Induction of a Progenitor State for the Efficient Expansion of Primary Human Hepatocytes 0.04
RNA-seq analysis of hPSC-derived brain pericyte-like cells, hPSC-derived neural crest stem cells, and primary human brain pericytes 0.04
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies [RNA-seq data set 2] 0.04
Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation 0.03
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo 0.03
CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo [RNA-Seq] 0.03
Cell cycle dynamics of human pluripotent stem cells primed for differentiation 0.03
Lineage specific differentiation is influenced by state of human pluripotency 0.03
Lineage specific differentiation is influenced by state of human pluripotency [RNA-seq] 0.03
Transcriptional dependencies in diffuse intrinsic pontine glioma 0.03
Microenvironmental-derived Regulation of HIF-Signaling Drives Transcriptional Heterogeneity in Glioblastoma Multiforme 0.03
Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes 0.03
RNA-Seq in PWS iPSC-derived neurons 0.03
ATXN7L3 And ENY2 Coordinate Activity Of Multiple H2B Deubiquitinases Important For Cellular Proliferation And Tumor Growth [RNA-Seq] 0.02
ATXN7L3 And ENY2 Coordinate Activity Of Multiple H2B Deubiquitinases Important For Cellular Proliferation And Tumor Growth 0.02
Aberrant expression profile of lncRNA and mRNA in dilated cardiomyopathy by RNA-sequence 0.02
Gene expression profiling of neural crest progenitor cultures derived from human embryonic stem cells carrying nonsense mutations in the Polycomb gene ASXL1 0.02
Glucose inhibits cardiac maturation through nucleotide biosynthesis 0.02
Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [H1 RNA-seq] 0.02
Mutant p63 disrupts the key specification switch from the multipotent cell state to stratified epithelia during epithelial differentiation/in ectodermal dysplasia disorders 0.02
CD133hi, Notchhi, DP (double positive) and DN (double negative) in GBML8 and GBML20, both patient-derived glioblastoma tumorsphere cultures 0.02
Sex-specific gene expression differences are evident in human embryonic stem cells and during in vitro differentiation of human placental progenitor cells 0.02
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [gene expression] 0.02
Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules 0.02
The global transcriptome analysis in the time course of hESC-derived cardiac differentiation 0.02
A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation 0.01
RNA sequencing quantitative analysis of RNA editing levels in ADAR1, ADAR2, AIMP2 overexpression and wild type HEK293 cells 0.01
MCF-7 as a model for functional analysis of breast cancer risk variants 0.01
Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular 0.01
hnRNP L protects mRNAs from nonsense-mediated mRNA decay 0.01
High-resolution comparative analysis of great ape genomes 0.01
ALS implicated protein TDP-43 sustains levels of STMN2 a mediator of motor neuron growth and repair 0.01
A compendium of promoter-centered long-range chromatin interactions in diverse human tissues and cell types 0.01
Derivation and differentiation of haploid human embryonic stem cells 0.01
Gene expression for surgically treated pancreatic cancer after one neoadjuvant vaccine dose 0.01
Preclinical model of obesity and ER-positive breast cancer 0.01
Genetic regulation of human adipose microRNA expression and its consequences for metabolic traits 0.01


Contact Us

For scientific and technical queries contact Butte Lab @UCSF


Cite GENEVA Tool

Manuscript in Preparation